MELO3C015104 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C015104
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionPeptide chain release factor 2
Locationchr2 : 7394999 .. 7395256 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTTCAGAAGCTCTTCAAAAGAGGGTGAATGGAGAGGCTGAAGTAAATCTTCAGAAGCAAGGCGAGCAACACCCATGTCATAGTTTGAATGGAAGATGTGGAAAATCAGGCTCTGAAAGAAAGAGTGTTAGATCTTGTCCAGATGATAGTTGTCGAAAAGATAATACAGGTGTAGCTTCTTATAAAGATGTACCAAGCAGTGTAGATATAGATGTGCAACCTGATTCTTTGCGTGTAAGTAAAAACATTGTTTAG

mRNA sequence

ATGGTTTCAGAAGCTCTTCAAAAGAGGGTGAATGGAGAGGCTGAAGTAAATCTTCAGAAGCAAGGCGAGCAACACCCATGTCATAGTTTGAATGGAAGATGTGGAAAATCAGGCTCTGAAAGAAAGAGTGTTAGATCTTGTCCAGATGATAGTTGTCGAAAAGATAATACAGGTGTAGCTTCTTATAAAGATGTACCAAGCAGTGTAGATATAGATGTGCAACCTGATTCTTTGCGTGTAAGTAAAAACATTGTTTAG

Coding sequence (CDS)

ATGGTTTCAGAAGCTCTTCAAAAGAGGGTGAATGGAGAGGCTGAAGTAAATCTTCAGAAGCAAGGCGAGCAACACCCATGTCATAGTTTGAATGGAAGATGTGGAAAATCAGGCTCTGAAAGAAAGAGTGTTAGATCTTGTCCAGATGATAGTTGTCGAAAAGATAATACAGGTGTAGCTTCTTATAAAGATGTACCAAGCAGTGTAGATATAGATGTGCAACCTGATTCTTTGCGTGTAAGTAAAAACATTGTTTAG

Protein sequence

MVSEALQKRVNGEAEVNLQKQGEQHPCHSLNGRCGKSGSERKSVRSCPDDSCRKDNTGVASYKDVPSSVDIDVQPDSLRVSKNIV*
Homology
[Close]
BLAST of MELO3C015104 vs. TrEMBL
Match: A0A0A0LZW7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G629160 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 5.5e-36
Identity = 76/79 (96.20%), Postives = 78/79 (98.73%), Query Frame = 1 

Query: 1  MVSEALQKRVNGEAEVNLQKQGEQHPCHSLNGRCGKSGSERKSVRSCPDDSCRKDNTGVA 60
          MVSEALQKRVNGEAEVNLQKQGEQHP HSLNGRCGKSGSERKSVRSCPDDSCR+DNTGVA
Sbjct: 1  MVSEALQKRVNGEAEVNLQKQGEQHPRHSLNGRCGKSGSERKSVRSCPDDSCREDNTGVA 60

Query: 61 SYKDVPSSVDIDVQPDSLR 80
          SYKDVPSSVDID+QPDSLR
Sbjct: 61 SYKDVPSSVDIDMQPDSLR 79

[Close]
BLAST of MELO3C015104 vs. NCBI nr
Match: gi|659098865|ref|XP_008450328.1| (PREDICTED: histone deacetylase 15 isoform X2 [Cucumis melo])

HSP 1 Score: 165.6 bits (418), Expect = 3.8e-38
Identity = 79/82 (96.34%), Postives = 81/82 (98.78%), Query Frame = 1 

Query: 1  MVSEALQKRVNGEAEVNLQKQGEQHPCHSLNGRCGKSGSERKSVRSCPDDSCRKDNTGVA 60
          MVSEALQKRVNGEAEVNLQKQGEQHPCHSLNGRCGKSGSERKSVRSCPDDSCRKDNTGVA
Sbjct: 1  MVSEALQKRVNGEAEVNLQKQGEQHPCHSLNGRCGKSGSERKSVRSCPDDSCRKDNTGVA 60

Query: 61 SYKDVPSSVDIDVQPDSLRVSK 83
          SYKDVPSSVDIDVQPDSLR ++
Sbjct: 61 SYKDVPSSVDIDVQPDSLRKTR 82

[Close]
BLAST of MELO3C015104 vs. NCBI nr
Match: gi|659098863|ref|XP_008450327.1| (PREDICTED: histone deacetylase 15 isoform X1 [Cucumis melo])

HSP 1 Score: 165.2 bits (417), Expect = 4.9e-38
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1 

Query: 1  MVSEALQKRVNGEAEVNLQKQGEQHPCHSLNGRCGKSGSERKSVRSCPDDSCRKDNTGVA 60
          MVSEALQKRVNGEAEVNLQKQGEQHPCHSLNGRCGKSGSERKSVRSCPDDSCRKDNTGVA
Sbjct: 1  MVSEALQKRVNGEAEVNLQKQGEQHPCHSLNGRCGKSGSERKSVRSCPDDSCRKDNTGVA 60

Query: 61 SYKDVPSSVDIDVQPDSLR 80
          SYKDVPSSVDIDVQPDSLR
Sbjct: 61 SYKDVPSSVDIDVQPDSLR 79

[Close]
BLAST of MELO3C015104 vs. NCBI nr
Match: gi|659098867|ref|XP_008450329.1| (PREDICTED: histone deacetylase 15 isoform X3 [Cucumis melo])

HSP 1 Score: 165.2 bits (417), Expect = 4.9e-38
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1 

Query: 1  MVSEALQKRVNGEAEVNLQKQGEQHPCHSLNGRCGKSGSERKSVRSCPDDSCRKDNTGVA 60
          MVSEALQKRVNGEAEVNLQKQGEQHPCHSLNGRCGKSGSERKSVRSCPDDSCRKDNTGVA
Sbjct: 1  MVSEALQKRVNGEAEVNLQKQGEQHPCHSLNGRCGKSGSERKSVRSCPDDSCRKDNTGVA 60

Query: 61 SYKDVPSSVDIDVQPDSLR 80
          SYKDVPSSVDIDVQPDSLR
Sbjct: 61 SYKDVPSSVDIDVQPDSLR 79

[Close]
BLAST of MELO3C015104 vs. NCBI nr
Match: gi|659098869|ref|XP_008450330.1| (PREDICTED: histone deacetylase 15 isoform X4 [Cucumis melo])

HSP 1 Score: 165.2 bits (417), Expect = 4.9e-38
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1 

Query: 1  MVSEALQKRVNGEAEVNLQKQGEQHPCHSLNGRCGKSGSERKSVRSCPDDSCRKDNTGVA 60
          MVSEALQKRVNGEAEVNLQKQGEQHPCHSLNGRCGKSGSERKSVRSCPDDSCRKDNTGVA
Sbjct: 1  MVSEALQKRVNGEAEVNLQKQGEQHPCHSLNGRCGKSGSERKSVRSCPDDSCRKDNTGVA 60

Query: 61 SYKDVPSSVDIDVQPDSLR 80
          SYKDVPSSVDIDVQPDSLR
Sbjct: 61 SYKDVPSSVDIDVQPDSLR 79

[Close]
BLAST of MELO3C015104 vs. NCBI nr
Match: gi|778663851|ref|XP_011660169.1| (PREDICTED: histone deacetylase 15 isoform X2 [Cucumis sativus])

HSP 1 Score: 158.3 bits (399), Expect = 6.0e-36
Identity = 76/82 (92.68%), Postives = 80/82 (97.56%), Query Frame = 1 

Query: 1  MVSEALQKRVNGEAEVNLQKQGEQHPCHSLNGRCGKSGSERKSVRSCPDDSCRKDNTGVA 60
          MVSEALQKRVNGEAEVNLQKQGEQHP HSLNGRCGKSGSERKSVRSCPDDSCR+DNTGVA
Sbjct: 1  MVSEALQKRVNGEAEVNLQKQGEQHPRHSLNGRCGKSGSERKSVRSCPDDSCREDNTGVA 60

Query: 61 SYKDVPSSVDIDVQPDSLRVSK 83
          SYKDVPSSVDID+QPDSLR ++
Sbjct: 61 SYKDVPSSVDIDMQPDSLRKTR 82

The following BLAST results are available for this feature:
BLAST of MELO3C015104 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LZW7_CUCSA5.5e-3696.20Uncharacterized protein OS=Cucumis sativus GN=Csa_1G629160 PE=4 SV=1[more]
BLAST of MELO3C015104 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659098865|ref|XP_008450328.1|3.8e-3896.34PREDICTED: histone deacetylase 15 isoform X2 [Cucumis melo][more]
gi|659098863|ref|XP_008450327.1|4.9e-38100.00PREDICTED: histone deacetylase 15 isoform X1 [Cucumis melo][more]
gi|659098867|ref|XP_008450329.1|4.9e-38100.00PREDICTED: histone deacetylase 15 isoform X3 [Cucumis melo][more]
gi|659098869|ref|XP_008450330.1|4.9e-38100.00PREDICTED: histone deacetylase 15 isoform X4 [Cucumis melo][more]
gi|778663851|ref|XP_011660169.1|6.0e-3692.68PREDICTED: histone deacetylase 15 isoform X2 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
biological_process GO:0009294 DNA mediated transformation
biological_process GO:0048573 photoperiodism, flowering
biological_process GO:0008150 biological_process
biological_process GO:0070932 histone H3 deacetylation
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0032041 NAD-dependent histone deacetylase activity (H3-K14 specific)
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C015104T1MELO3C015104T1mRNA