MELO3C014216 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C014216
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Ubiquinone biosynthesis O-methyltransferase
Location	chr8 : 29369186 .. 29370591 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCAAGAAGTGCATTTCTGCCAGAAGTTCACAAATATGAAATCTCATTGGGTGAGAAGTTTTTTATTATCAGGAAAGAACTTTTACATGTAAATGTTATTCATTGAACACCTCAAATGCATACCTTATATTGCTTGCCTCATCCTTCAAACATTGACATGCGTGAATGATTTTAAGTCTAAATTATTAGAGAGTTTTTGTCATGATGGAGGACAAATACAATGCATAACCCCAAGCTTCCTTTTTATCATTATGTTTGTATCGTGGAAATATATGACCTTTGATTACATGATAATATGAGTACCTTTACTTGTCTATCCTTCTTAAACGATGAAGATTTTCTTTGTAATTATTTTCCGATACGATCTTCATTTGTATTCCATTTGAATATCAATGAATGTTTATATTTCCTATATATAGAGATAGAGCAAAGATAATTTGAGCACCTTTGTAGGTCCTCAACGATTTTTATCCCAATATCAATTTTATTTCCTTTTTTTCCTGCATCATATATATATATGATATAGATATATGTATGTACGCATGTATGAGATAGAGAGAGAATGCAGATGTAAATGTGCCATAGAATATTTAGGTGGCTATAACTTATAATTATAAGTAGAGGAAGCTATAAGCGTGGGAGAGCAATTTTGGAAGTAGTTAGTGGAAGAGTTCTCGCCTCTTGAAGTGCTTGGAAAACTTGCAATCTTCCATCTTGATTTCAATACTATAATTTGGTAACTTTCATTCAGTTTGTAAGTTTATGGGATAGTCTAGGCCTCTTCAAGGTTTGGGAAAACTTGTAATTTTCGTTCAGTATCACTAACTTTTTTTCTTTTTTTTTTTTTTTTTTTTAGTTGTAATTTTCCTATTTTTGTATTTCTTTGTTGTAATAGTCGGNNNNNNNNNNNNNNNNNNNNATAGTCTAGGCCTCTTCAAGGTTTGGGAAAACTTGTAATTTTCGTTCAAGTATCACTAACTTTTTTCTTTTTTTTTTTTTTTTGTTGAATTTCCATTTTGATTCTTGTTGAATAGCGGTTCTTTCAACACATATCTCCTCTCTAAATTACTCCACCTTACATTTTTGAATTTGGGGTGATTTTTCATCAATTCCAGATTGACAATTTGTACAATAAGATATTCTTCTCCGCATAATCATAATTTTTGCCTCATTGTTTTTGTCTAGATATTGCCTTTCTGACTTGCAACCATTTTCAATTTTCTCTTCATAGGTAAAAGTGGAGGGACCTTTTCTTCCTGCACCACTAAATGATTCAAATGAAGTTGAGGATTTACTTGTGGAGTCTAAAAGCGAGCATGTTTTAGGAAATTGTTTGAGAGTTCAAGATTTCTCTTGCGACTTCGGCTATGGAATACAAACAAACGGTGGTGAATTCTTATGA

mRNA sequence

ATGGATCAAGAAGTGCATTTCTGCCAGAAGTTCACAAATATGAAATCTCATTGGGTAAAAGTGGAGGGACCTTTTCTTCCTGCACCACTAAATGATTCAAATGAAGTTGAGGATTTACTTGTGGAGTCTAAAAGCGAGCATGTTTTAGGAAATTGTTTGAGAGTTCAAGATTTCTCTTGCGACTTCGGCTATGGAATACAAACAAACGGTGGTGAATTCTTATGA

Coding sequence (CDS)

ATGGATCAAGAAGTGCATTTCTGCCAGAAGTTCACAAATATGAAATCTCATTGGGTAAAAGTGGAGGGACCTTTTCTTCCTGCACCACTAAATGATTCAAATGAAGTTGAGGATTTACTTGTGGAGTCTAAAAGCGAGCATGTTTTAGGAAATTGTTTGAGAGTTCAAGATTTCTCTTGCGACTTCGGCTATGGAATACAAACAAACGGTGGTGAATTCTTATGA

Protein sequence

MDQEVHFCQKFTNMKSHWVKVEGPFLPAPLNDSNEVEDLLVESKSEHVLGNCLRVQDFSCDFGYGIQTNGGEFL*

Homology

[Close]

BLAST of MELO3C014216 vs. TrEMBL
Match: M5WGZ0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005692mg PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 6.5e-09
Identity = 35/83 (42.17%), Postives = 46/83 (55.42%), Query Frame = 1


Query: 1  MDQEVHFCQKFTNMKSHWVKVEGPFLPAPLNDSNEVEDLLVESKSEHV------------ 60
          MD E H   KF NMKS  VKVEG F PA  +++  +E LL E KSE+V            
Sbjct: 1  MDHEAHSRNKFVNMKSQRVKVEGSFAPALEDETETIEHLLAEPKSEYVTVDGVLCCGKEN 60

Query: 61 LGNCLRVQDFSCDFGYGIQTNGG 72
           G C+ ++DFSC + +G+ T  G
Sbjct: 61 AGKCMDIEDFSCGYDFGLNTYSG 83

[Close]

BLAST of MELO3C014216 vs. NCBI nr
Match: gi|659096672|ref|XP_008449224.1| (PREDICTED: uncharacterized protein LOC103491166 isoform X1 [Cucumis melo])

HSP 1 Score: 155.2 bits (391), Expect = 4.4e-35
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1


Query: 1  MDQEVHFCQKFTNMKSHWVKVEGPFLPAPLNDSNEVEDLLVESKSEHVLGNCLRVQDFSC 60
          MDQEVHFCQKFTNMKSHWVKVEGPFLPAPLNDSNEVEDLLVESKSEHVLGNCLRVQDFSC
Sbjct: 1  MDQEVHFCQKFTNMKSHWVKVEGPFLPAPLNDSNEVEDLLVESKSEHVLGNCLRVQDFSC 60

Query: 61 DFGYGIQTNGG 72
          DFGYGIQTNGG
Sbjct: 61 DFGYGIQTNGG 71

[Close]

BLAST of MELO3C014216 vs. NCBI nr
Match: gi|659096674|ref|XP_008449225.1| (PREDICTED: uncharacterized protein LOC103491166 isoform X2 [Cucumis melo])

HSP 1 Score: 155.2 bits (391), Expect = 4.4e-35
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1


Query: 1  MDQEVHFCQKFTNMKSHWVKVEGPFLPAPLNDSNEVEDLLVESKSEHVLGNCLRVQDFSC 60
          MDQEVHFCQKFTNMKSHWVKVEGPFLPAPLNDSNEVEDLLVESKSEHVLGNCLRVQDFSC
Sbjct: 1  MDQEVHFCQKFTNMKSHWVKVEGPFLPAPLNDSNEVEDLLVESKSEHVLGNCLRVQDFSC 60

Query: 61 DFGYGIQTNGG 72
          DFGYGIQTNGG
Sbjct: 61 DFGYGIQTNGG 71

[Close]

BLAST of MELO3C014216 vs. NCBI nr
Match: gi|659096678|ref|XP_008449227.1| (PREDICTED: uncharacterized protein LOC103491166 isoform X4 [Cucumis melo])

HSP 1 Score: 155.2 bits (391), Expect = 4.4e-35
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1


Query: 1  MDQEVHFCQKFTNMKSHWVKVEGPFLPAPLNDSNEVEDLLVESKSEHVLGNCLRVQDFSC 60
          MDQEVHFCQKFTNMKSHWVKVEGPFLPAPLNDSNEVEDLLVESKSEHVLGNCLRVQDFSC
Sbjct: 1  MDQEVHFCQKFTNMKSHWVKVEGPFLPAPLNDSNEVEDLLVESKSEHVLGNCLRVQDFSC 60

Query: 61 DFGYGIQTNGG 72
          DFGYGIQTNGG
Sbjct: 61 DFGYGIQTNGG 71

[Close]

BLAST of MELO3C014216 vs. NCBI nr
Match: gi|659096676|ref|XP_008449226.1| (PREDICTED: uncharacterized protein LOC103491166 isoform X3 [Cucumis melo])

HSP 1 Score: 152.9 bits (385), Expect = 2.2e-34
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1


Query: 1  MDQEVHFCQKFTNMKSHWVKVEGPFLPAPLNDSNEVEDLLVESKSEHVLGNCLRVQDFSC 60
          MDQEVHFCQKFTNMKSHWVKVEGPFLPAPLNDSNEVEDLLVESKSEHVLGNCLRVQDFSC
Sbjct: 1  MDQEVHFCQKFTNMKSHWVKVEGPFLPAPLNDSNEVEDLLVESKSEHVLGNCLRVQDFSC 60

Query: 61 DFGYGIQTNG 71
          DFGYGIQTNG
Sbjct: 61 DFGYGIQTNG 70

[Close]

BLAST of MELO3C014216 vs. NCBI nr
Match: gi|778717141|ref|XP_004143262.2| (PREDICTED: uncharacterized protein LOC101219571 isoform X2 [Cucumis sativus])

HSP 1 Score: 148.7 bits (374), Expect = 4.2e-33
Identity = 68/71 (95.77%), Postives = 69/71 (97.18%), Query Frame = 1


Query: 1  MDQEVHFCQKFTNMKSHWVKVEGPFLPAPLNDSNEVEDLLVESKSEHVLGNCLRVQDFSC 60
          MDQEVHFCQKFTNMKSHWVKVE PFLP PLNDSNEVEDLLVESKSEHVLG+CLRVQDFSC
Sbjct: 1  MDQEVHFCQKFTNMKSHWVKVERPFLPTPLNDSNEVEDLLVESKSEHVLGSCLRVQDFSC 60

Query: 61 DFGYGIQTNGG 72
          DFGYGIQTNGG
Sbjct: 61 DFGYGIQTNGG 71

The following BLAST results are available for this feature:

BLAST of MELO3C014216 vs. TrEMBL


Match Name	E-value	Identity	Description
M5WGZ0_PRUPE	6.5e-09	42.17	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005692mg PE=4 SV=1	[more]

BLAST of MELO3C014216 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659096672\|ref\|XP_008449224.1\|	4.4e-35	100.00	PREDICTED: uncharacterized protein LOC103491166 isoform X1 [Cucumis melo]	[more]
gi\|659096674\|ref\|XP_008449225.1\|	4.4e-35	100.00	PREDICTED: uncharacterized protein LOC103491166 isoform X2 [Cucumis melo]	[more]
gi\|659096678\|ref\|XP_008449227.1\|	4.4e-35	100.00	PREDICTED: uncharacterized protein LOC103491166 isoform X4 [Cucumis melo]	[more]
gi\|659096676\|ref\|XP_008449226.1\|	2.2e-34	100.00	PREDICTED: uncharacterized protein LOC103491166 isoform X3 [Cucumis melo]	[more]
gi\|778717141\|ref\|XP_004143262.2\|	4.2e-33	95.77	PREDICTED: uncharacterized protein LOC101219571 isoform X2 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0000785	chromatin
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003682	chromatin binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU52169	melon EST collection version 4.0	transcribed_cluster
MU65716	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C014216T1	MELO3C014216T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU65716	MU65716	transcribed_cluster
MU52169	MU52169	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C014216	ClCG04G009190	Watermelon (Charleston Gray)	mewcgB530
MELO3C014216	Cla97C04G075910	Watermelon (97103) v2	mewmbB541
MELO3C014216	Bhi03G001216	Wax gourd	mewgoB645
MELO3C014216	CSPI06G24570	Wild cucumber (PI 183967)	cpimeB514
MELO3C014216	Cucsa.124550	Cucumber (Gy14) v1	cgymeB195
MELO3C014216	CmoCh03G012220	Cucurbita moschata (Rifu)	cmomeB603
MELO3C014216	Lsi01G013200	Bottle gourd (USVL1VR-Ls)	lsimeB151
MELO3C014216	Cp4.1LG10g04590	Cucurbita pepo (Zucchini)	cpemeB076
MELO3C014216	CsGy6G023960	Cucumber (Gy14) v2	cgybmeB447
MELO3C014216	Carg10418	Silver-seed gourd	carmeB0243
MELO3C014216	CsaV3_6G039760	Cucumber (Chinese Long) v3	cucmeB522

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C014216	Cucurbita maxima (Rimu)	cmameB615
MELO3C014216	Cucurbita maxima (Rimu)	cmameB800
MELO3C014216	Cucurbita moschata (Rifu)	cmomeB784
MELO3C014216	Cucumber (Chinese Long) v2	cumeB490
MELO3C014216	Watermelon (97103) v1	mewmB583
MELO3C014216	Cucurbita pepo (Zucchini)	cpemeB460