MELO3C013392 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C013392
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Putative Ty1-copia-like retrotransposon
Location	chr1 : 16412319 .. 16414097 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCACAGATGGAAGTTTCTCATGGTATCAGAGCCTAACATTTGTTTTTTTCTTCACTCATCTTTTCTTTGTTCGAAGTGTTTGAACTTCTTTCTTTGTGAAACTGAAGTCTCAAGTCTCTCTTGATCTTTTGCCAAGTGTACCAGATGAGTTCCTCAACTACCTTGCCTTCTTCTTCGGCTGAGAAAGATTCACTTTCACCAATTTTTCTACTGTCCAACATCTGTAACCTGATTTCAATGAGGCTTGACTCTACAAATTTTGTCCTTTGGAAATTCCAATTGACAGCGATTTTGAAAGCTCATAAACTTTATGGCTTTATTGATGGTACTAATCCATGTCCTCCTCGGACTAATAATTCCTCTTCTACCTCAACCGTTCCGCCTCAATCGAATCCTTCATATGAAGATTGGATTGCTAAGGATCAAGCTCTTATGACAGTCATAAATGCTACACTTTCACCTGAGGCTTTGGCATATGTTGTTGGAAGCACTTCTTCCAAACAGGTTTGGGATGTTCTTGCAAAGCTTTATTCTTCTGGTTCCCGGTCTAATGTGGTGAATTTAAAGTCGGATTTGCAAACTATTTACAAGAAGCCTGATGAATCTATTGATGCCTACATTAAACGGATAAAGGAGATCAAGGATAAACTTGCTAATGTTTCTACTTTTATTAATGAAGAGGATCTTCTTATCTATGCTTTAAATGGCCTTCCAAATGAGTATAACACTTTTCGAACGTCAATGCGTACACGTTCTCAACCTGTTACTTTTGAAGAACTTCATGTTCTTCTAAGAGCTGAGGAATCAGCTCTTGCAAAACAATCCAAGGGTGATGATTCGTATAATCAACCGACTGTTTTACTCTCTTCTTCTCAATCTCTCCTGTCTTGTGCTCCTACTTTCGATAACAACTTTGTTCGAGGCAATGGACATGGTAAACATTATGGACATGGACGCTTTTCTTTCGATGCTCAAACTCGTGGTCATGGTTCTTCCCCAGAACAAAAGTCTGTTCATGATAATCATGCAACTTGTCAGATTTGTTCACGTCGTGGCCACACTGCACTCGATTGTTTCAATCGCATGAACTATAATTTTCAAGGACGTCATCCTCCACAACAACTTGCTGCAATGGTTGCATCGCAGAATAATGCATTTCTATCTATTGTGAATTCGTCTTCTTTGACTGATTCAGGTTGCAACACTCGTATTACTTCAGATATGAATTATGTTTCTCTTGCACCTGAATATAATGGTGAAGAACAAGTTGGCATTGGTAATGGACAGACTCGGCCTATGTCCCACTCAGGTTGTGATACTTTTGAACCTTCTTCCTATTTCTCTCTTTCTAATCTTGTTTGTGTTTCTTAATATTATCTCTAGTTTCCTTTTTGTTCATTAACTCAGTGTTAAAAATAATTGTCTTATCGCTTTTTGCTCCGAATAATTTTCAATTCAGGACAAGTCTTCGGGAAAATTTTTGTTCCAAAGGCCTAGCATTGGTGATCTGATCACTTCTAAGGCTGTGGCTGCTTCTAGTTTATCTTCCACCAGTCTATTGTTCTACTGTTGCTTATGTTGCTGACAAGTCCTCTTTTGCTCATATTGCTGTTCTTCTTAAGTTTGTTGTTTTCTTGTTGCATTTGCCATATACTTCAAATAAAGTAAGTGTGAATATTGTCTACATGGAAAAAGTGAGGAGACTTTCTTTTAATTGATCAAAGAAGGTTTCGGTACATTTCTTTTAGAGCCTTTTCATACTGATGTATGAGATTCT

mRNA sequence

ATTCACAGATGGAAGTTTCTCATGGTATCAGAGCCTAACATTTGTTTTTTTCTTCACTCATCTTTTCTTTGTTCGAAGTGTTTGAACTTCTTTCTTTGTGAAACTGAAGTCTCAAGTCTCTCTTGATCTTTTGCCAAGTGTACCAGATGAGTTCCTCAACTACCTTGCCTTCTTCTTCGGCTGAGAAAGATTCACTTTCACCAATTTTTCTACTGTCCAACATCTGTAACCTGATTTCAATGAGGCTTGACTCTACAAATTTTGTCCTTTGGAAATTCCAATTGACAGCGATTTTGAAAGCTCATAAACTTTATGGCTTTATTGATGGTACTAATCCATGTCCTCCTCGGACTAATAATTCCTCTTCTACCTCAACCGTTCCGCCTCAATCGAATCCTTCATATGAAGATTGGATTGCTAAGGATCAAGCTCTTATGACAGTCATAAATGCTACACTTTCACCTGAGGCTTTGGCATATGTTGTTGGAAGCACTTCTTCCAAACAGGTTTGGGATGTTCTTGCAAAGCTTTATTCTTCTGGTTCCCGGTCTAATGTGGTGAATTTAAAGTCGGATTTGCAAACTATTTACAAGAAGCCTGATGAATCTATTGATGCCTACATTAAACGGATAAAGGAGATCAAGGATAAACTTGCTAATGTTTCTACTTTTATTAATGAAGAGGATCTTCTTATCTATGCTTTAAATGGCCTTCCAAATGAGTATAACACTTTTCGAACGTCAATGCGTACACGTTCTCAACCTGTTACTTTTGAAGAACTTCATGTTCTTCTAAGAGCTGAGGAATCAGCTCTTGCAAAACAATCCAAGGGTGATGATTCGTATAATCAACCGACTGTTTTACTCTCTTCTTCTCAATCTCTCCTGTCTTGTGCTCCTACTTTCGATAACAACTTTGTTCGAGGCAATGGACATGGTAAACATTATGGACATGGACGCTTTTCTTTCGATGCTCAAACTCGTGGTCATGGTTCTTCCCCAGAACAAAAGTCTGTTCATGATAATCATGCAACTTGTCAGATTTGTTCACGTCGTGGCCACACTGCACTCGATTGTTTCAATCGCATGAACTATAATTTTCAAGGACGTCATCCTCCACAACAACTTGCTGCAATGGTTGCATCGCAGAATAATGCATTTCTATCTATTGTGAATTCGTCTTCTTTGACTGATTCAGGTTGCAACACTCGTATTACTTCAGATATGAATTATGTTTCTCTTGCACCTGAATATAATGGTGAAGAACAAGTTGGCATTGGTAATGGACAGACTCGGCCTATGTCCCACTCAGGACAAGTCTTCGGGAAAATTTTTGTTCCAAAGGCCTAGCATTGGTGATCTGATCACTTCTAAGGCTGTGGCTGCTTCTAGTTTATCTTCCACCAGTCTATTGTTCTACTGTTGCTTATGTTGCTGACAAGTCCTCTTTTGCTCATATTGCTGTTCTTCTTAAGTTTGTTGTTTTCTTGTTGCATTTGCCATATACTTCAAATAAAGTAAGTGTGAATATTGTCTACATGGAAAAAGTGAGGAGACTTTCTTTTAATTGATCAAAGAAGGTTTCGGTACATTTCTTTTAGAGCCTTTTCATACTGATGTATGAGATTCT

Coding sequence (CDS)

ATGAGTTCCTCAACTACCTTGCCTTCTTCTTCGGCTGAGAAAGATTCACTTTCACCAATTTTTCTACTGTCCAACATCTGTAACCTGATTTCAATGAGGCTTGACTCTACAAATTTTGTCCTTTGGAAATTCCAATTGACAGCGATTTTGAAAGCTCATAAACTTTATGGCTTTATTGATGGTACTAATCCATGTCCTCCTCGGACTAATAATTCCTCTTCTACCTCAACCGTTCCGCCTCAATCGAATCCTTCATATGAAGATTGGATTGCTAAGGATCAAGCTCTTATGACAGTCATAAATGCTACACTTTCACCTGAGGCTTTGGCATATGTTGTTGGAAGCACTTCTTCCAAACAGGTTTGGGATGTTCTTGCAAAGCTTTATTCTTCTGGTTCCCGGTCTAATGTGGTGAATTTAAAGTCGGATTTGCAAACTATTTACAAGAAGCCTGATGAATCTATTGATGCCTACATTAAACGGATAAAGGAGATCAAGGATAAACTTGCTAATGTTTCTACTTTTATTAATGAAGAGGATCTTCTTATCTATGCTTTAAATGGCCTTCCAAATGAGTATAACACTTTTCGAACGTCAATGCGTACACGTTCTCAACCTGTTACTTTTGAAGAACTTCATGTTCTTCTAAGAGCTGAGGAATCAGCTCTTGCAAAACAATCCAAGGGTGATGATTCGTATAATCAACCGACTGTTTTACTCTCTTCTTCTCAATCTCTCCTGTCTTGTGCTCCTACTTTCGATAACAACTTTGTTCGAGGCAATGGACATGGTAAACATTATGGACATGGACGCTTTTCTTTCGATGCTCAAACTCGTGGTCATGGTTCTTCCCCAGAACAAAAGTCTGTTCATGATAATCATGCAACTTGTCAGATTTGTTCACGTCGTGGCCACACTGCACTCGATTGTTTCAATCGCATGAACTATAATTTTCAAGGACGTCATCCTCCACAACAACTTGCTGCAATGGTTGCATCGCAGAATAATGCATTTCTATCTATTGTGAATTCGTCTTCTTTGACTGATTCAGGTTGCAACACTCGTATTACTTCAGATATGAATTATGTTTCTCTTGCACCTGAATATAATGGTGAAGAACAAGTTGGCATTGGTAATGGACAGACTCGGCCTATGTCCCACTCAGGACAAGTCTTCGGGAAAATTTTTGTTCCAAAGGCCTAG

Protein sequence

MSSSTTLPSSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFIDGTNPCPPRTNNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQVWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLANVSTFINEEDLLIYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALAKQSKGDDSYNQPTVLLSSSQSLLSCAPTFDNNFVRGNGHGKHYGHGRFSFDAQTRGHGSSPEQKSVHDNHATCQICSRRGHTALDCFNRMNYNFQGRHPPQQLAAMVASQNNAFLSIVNSSSLTDSGCNTRITSDMNYVSLAPEYNGEEQVGIGNGQTRPMSHSGQVFGKIFVPKA*

Homology

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BLAST of MELO3C013392 vs. TrEMBL
Match: I7K8K8_9ROSA (T4.5 protein OS=Malus x robusta GN=T4.5 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 3.2e-46
Identity = 125/410 (30.49%), Postives = 216/410 (52.68%), Query Frame = 1


Query: 2   SSSTTLPSSSAEKDSLSPIFLLS--NICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFI 61
           +S   LP S      +  +  +S  N+  ++  +L+  N++ W+     +LK  KL G +
Sbjct: 244 NSPANLPPSVLSNPPIMTLGTISITNVAGMVPTKLNRQNYITWRSLFIPVLKRFKLIGLV 303

Query: 62  DGTNPCPPRTNNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSSK 121
           +G + CPP      S + VP   N S+E W  +DQ LM  IN+TLS + L   +G   S+
Sbjct: 304 NGEDLCPPPFVRDPSGTCVP---NASFETWCERDQILMIWINSTLSKDLLPLTIGMEDSR 363

Query: 122 QVWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLANVSTFINEE 181
            +W  L + +S  SR++V +L+S +QTI+K  D S+  ++  IKEI +KLA     ++E 
Sbjct: 364 SLWQSLERRFSGASRTHVHSLRSKIQTIHKG-DSSMTDFLNSIKEISNKLAAAGEPLSES 423

Query: 182 DLLIYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALAK-QSKGDDSYNQPTV 241
           DL+ Y L+GLP+EY +F  S+ TR++ VT +ELH LL ++E +L K +++   S N P  
Sbjct: 424 DLVAYILSGLPDEYESFVDSIETRNESVTADELHGLLLSKEISLQKRKTRASSSSNAPFH 483

Query: 242 LLSSSQSLLSCAPTFDNNFVRGNGHGKHYGHGRFSFDAQTRGH--------------GSS 301
             ++  S      T   +F +GN  G+ +   R++ +    G+              G+ 
Sbjct: 484 AYAAQSS------THVGHFNKGNSRGRFHNRNRYTQNRNFGGNKPHNWHANNSGGILGAG 543

Query: 302 PEQKSVHDNHAT-----CQICSRRGHTALDCFNRMNYNFQGRHPPQQLAAMVASQNNAFL 361
           P ++    + ++     CQ+C + GH A  C NR++  F     P  ++AM +S + ++ 
Sbjct: 544 PSRQPAGPSSSSGCSVQCQLCLQYGHWAPMC-NRLS-QFAQSQSPTAMSAMTSSASPSYW 603

Query: 362 SIVNSSSLTDSGCNTRITSDMNYVSLAPEYNGEEQVGIGNGQTRPMSHSG 390
                  LTDSG +  +T D + ++ A  Y+G +Q+ +G+G+   +SH+G
Sbjct: 604 -------LTDSGASHHVTPDPSALNSAIPYSGNDQLFVGDGKGLCISHTG 634

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BLAST of MELO3C013392 vs. TrEMBL
Match: A5AXT5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026810 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 2.1e-45
Identity = 128/378 (33.86%), Postives = 197/378 (52.12%), Query Frame = 1


Query: 15  DSLSPIFLLSNICNLISMRLD-STNFVLWKFQLTAILKAHKLYGFIDGTNPCPPRTNNSS 74
           D+  P+ +L     +IS++LD S N++ WK Q   +L+ H L GFIDGT  CPP+   S 
Sbjct: 6   DTSIPVSILPPSTTIISVKLDGSHNYLAWKMQFLNLLRGHDLMGFIDGTEACPPKHTASG 65

Query: 75  STSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQVWDVLAKLYSSGS 134
           S        NP+Y  W  KD  L+  I A+LS + ++ + G  +SKQVW  L   +SS S
Sbjct: 66  SL-------NPAYVVWQKKDVCLLGWILASLSEKLVSTIYGLETSKQVWTALQTRFSSQS 125

Query: 135 RSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLANVSTFINEEDLLIYALNGLPNEY 194
           RS + +LK  LQT+  +  +S   Y++  K + D+LA     ++++DL+ + L GL + Y
Sbjct: 126 RSRISHLKRQLQTL-TQGTKSCSEYLESAKTLADQLAAAGKPVDDQDLISFLLGGLQSSY 185

Query: 195 NTFRTSMR--TRSQPVTFEELHVLLRAEESALAKQSKGDDSYNQPTVLLSSSQSLLSCAP 254
             F TS    +R    TFE+    L   E+ L       ++ + P    ++++S    AP
Sbjct: 186 TPFVTSFNFASRETDFTFEDFQAELLGYENLLDVNHSVHNT-DGPHFAFAANKSK---AP 245

Query: 255 TFDNNFVRGNGHGKHYGHGRFSFDAQTRGHGSSPEQKSVHDNHATCQICSRRGHTALDCF 314
           T+     +G            S + +++   S+P Q  + +N   CQIC + GHTA+DCF
Sbjct: 246 TYVQK--KGPPLPPTKMQNAASSNYRSQQTRSTPSQ--LPNNRPVCQICGKSGHTAIDCF 305

Query: 315 NRMNYNFQGRHPPQQLAAMVASQNNAFLSIVNSSSLTDSGCNTRITSDMNYVSLAPEYNG 374
           +R +Y++QGR PPQ LAAMVA  N  F    +     DSG N  ITSD   ++    +  
Sbjct: 306 HRFDYSYQGRFPPQDLAAMVAETNATF---DHQVWYMDSGANAHITSDATNLTHQQPFCE 364

Query: 375 EEQVGIGNGQTRPMSHSG 390
            E V +GNG    + ++G
Sbjct: 366 SETVTVGNGSGLQVLNTG 364

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BLAST of MELO3C013392 vs. TrEMBL
Match: J7G0P5_ROSRU (Retrotransposon polyprotein OS=Rosa rugosa PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.9e-43
Identity = 120/380 (31.58%), Postives = 194/380 (51.05%), Query Frame = 1


Query: 25  NICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFIDGTNPCPPRTNNSSSTSTVPPQSNP 84
           ++ N ++++LD TN+ LW  Q+T ILK+ KL+GF+DGTN CPP          +  Q NP
Sbjct: 12  SVSNFLTIKLDRTNYPLWLAQITPILKSRKLWGFVDGTNLCPP-CFLKDKAGQLTDQVNP 71

Query: 85  SYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQVWDVLAKLYSSGSRSNVVNLKSDL 144
            +E WI +DQ +++ IN +L+P+ L+ V  STS    W  LA  ++S S+  V+ L++DL
Sbjct: 72  DFEPWILQDQMVLSWINGSLTPKVLSTVARSTSLHATWTALATRFASQSQHRVLQLRADL 131

Query: 145 QTIYKKPDESIDAYIKRIKEIKDKLANVSTFINEEDLLIYALNGLPNEYNTFRTSMRTRS 204
                +   SI  Y+ ++  I D LA   + + + DL+   +  +   Y T  +S + R 
Sbjct: 132 LRT-TRGTMSISDYLDKLNSIADNLALAGSPVPDADLVNIVMTNVGPLYETTVSSAQARD 191

Query: 205 QPVTFEELHVLLRAEESALAKQSKGDDSYNQPTVLLSSSQSLLSCAPTFDNNFVRGNG-- 264
            P+T+E L VLL + E  +++ +    +  +    L ++QS         N+F+ G G  
Sbjct: 192 SPITYEALEVLLLSAERRVSEYA--HPAAAEGIHALHATQS----RGRGRNSFISGRGGS 251

Query: 265 -HGKHYGHG-RFSFDAQTRG-------HGSSPEQKS-----------------VHDNHAT 324
             G  Y HG   S  A +RG        GSS  ++S                  +     
Sbjct: 252 NRGGSYSHGITNSGSAHSRGRGTFSHSRGSSGSRRSSILGPAPGTTTSNGNSFFNTGRIQ 311

Query: 325 CQICSRRGHTALDCFNRMNYNFQGRHPPQQLAAMVASQNNAFLSIVNSSSLTDSGCNTRI 377
           CQICSR GH+A+DCFNR+N +++GR P  +L AM A  + +       + LTD+G N+ +
Sbjct: 312 CQICSRPGHSAIDCFNRLNLSYEGRVPSSRLNAMTAHHSPS-----EETWLTDTGANSHV 371

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BLAST of MELO3C013392 vs. TrEMBL
Match: V9GZT4_MAIZE (Copia-like retrotransposon Hopscotch polyprotein OS=Zea mays GN=gag PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.6e-42
Identity = 118/378 (31.22%), Postives = 198/378 (52.38%), Query Frame = 1


Query: 12  AEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFIDGTNPCPPRTNN 71
           A + SLS   + ++    +S +L   N++LWK Q+   ++A +L   + G   CPP+T +
Sbjct: 2   AMQSSLSTSAIPTSFAIPVSEKLTKGNYLLWKAQVLPAIRAAQLDDILTGVEICPPKTIS 61

Query: 72  SSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQVWDVLAKLYSS 131
            +S  TV   +NP+Y  WIA+DQA++  + ++LS E L+ VV  ++S  VW  L+++YSS
Sbjct: 62  DASDRTVTV-ANPAYGRWIARDQAVLGYLLSSLSREVLSSVVNCSTSASVWTTLSEMYSS 121

Query: 132 GSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLANVSTFINEEDLLIYALNGLPN 191
            SR+  VN +  L T  KK   S+  Y  +++   D+L      +++E+ + + L GL  
Sbjct: 122 HSRARKVNTRIALATT-KKGASSVAEYFAKMRGFADELGAAGKPLDDEEFVSFLLTGLDE 181

Query: 192 EYNTFRTSMRTRSQPVTFEELHVLLRAEESALAKQSKGDDSYNQPTVLLSSSQSLLSCAP 251
           ++N   T++  RS P+T  +L+  L + E+ +  Q+ G  S  Q +    S    +S   
Sbjct: 182 DFNPLVTAVVARSDPITPGDLYTQLLSYENRMHLQT-GSSSLMQSSANARSPGRGMSWGR 241

Query: 252 TFDNNFVRGNGHGKHYGHGRFSFDAQTRGHGSSPEQKSVHDNHATCQICSRRGHTALDCF 311
           +    F RG G G+  G  R  F +  RG+  S    +   +   CQ+CSR GHTAL+C+
Sbjct: 242 SGGRGFSRGRGRGR--GPSRGGFQSFGRGNNYSGATDADTSSRPRCQVCSRVGHTALNCW 301

Query: 312 NRMNYNFQGRHPPQQLAAMVASQNNAFLSIVNSSSLTDSGCNTRITSDMNYVSLAPEYNG 371
            R + N+    P Q+ A   A QN +     N    TD+G    IT D++ +++  +Y G
Sbjct: 302 YRFDENYV---PDQRSANSAAHQNGS-----NVPWYTDTGATDHITGDLDRLTMHDKYTG 361

Query: 372 EEQVGIGNGQTRPMSHSG 390
            +Q+   NG    +S+ G
Sbjct: 362 TDQIIAANGTGMTISNIG 366

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BLAST of MELO3C013392 vs. TrEMBL
Match: Q94KV0_ARATH (Polyprotein OS=Arabidopsis thaliana PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 2.4e-41
Identity = 111/372 (29.84%), Postives = 187/372 (50.27%), Query Frame = 1


Query: 25  NICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFIDGTNPCPPRTNNSSSTSTVPPQSNP 84
           ++ + ++++L+ +N++LWK Q  ++L  HKL GF++G    PPRT N  +  T    +NP
Sbjct: 12  HVSSSVTLKLNDSNYLLWKTQFESLLSCHKLIGFVNGGITPPPRTLNVVTGDTSVDVANP 71

Query: 85  SYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQVWDVLAKLYSSGSRSNVVNLKSDL 144
            YE W   DQ + + +  TLS E L YV    +S+ +W  LA+ ++  S +    L+  L
Sbjct: 72  QYESWFCTDQLIRSWLFGTLSEEVLGYVHNLQTSRDIWISLAENFNKSSVAREFTLRRTL 131

Query: 145 QTIYKKPDESIDAYIKRIKEIKDKLANVSTFINEEDLLIYALNGLPNEYNTFRT---SMR 204
           Q + KK D+++ AY +    + D L+++   ++E   +   LNGL  EY+   T   S  
Sbjct: 132 QLLSKK-DKTLSAYCREFIAVCDALSSIGKPVDESMKIFGFLNGLGREYDPITTVIQSSL 191

Query: 205 TRSQPVTFEELHVLLRAEESALAKQSKGDDSYNQPTVLLSSSQSLLSCAPTFDNNFVRGN 264
           ++  P TF +  V+   +   +  QS  +     P +  ++ +S       + +N+  GN
Sbjct: 192 SKISPPTFRD--VISEVKGFDVKLQSYEESVTANPHMAFNTQRS------EYTDNYTSGN 251

Query: 265 -GHGK-HYGHGRFSFDAQTRGHGSSPEQKSVHD--NHATCQICSRRGHTALDCFNRMNYN 324
            G G+  YG  R      TRG G S  Q + ++      CQIC R GHTAL C+NR ++N
Sbjct: 252 RGKGRGGYGQNRGRSGYSTRGRGFSQHQTNSNNTGERPVCQICGRTGHTALKCYNRFDHN 311

Query: 325 FQGRHPPQQLAAMVASQNNAFLSIVNSSSLTDSGCNTRITSDMNYVSLAPEYNGEEQVGI 384
           +Q     Q  +++  S ++          + DS     +TS  N +  A  YNG + V +
Sbjct: 312 YQSVDTAQAFSSLRVSDSS------GKEWVPDSAATAHVTSSTNNLQAASPYNGSDTVLV 368

Query: 385 GNGQTRPMSHSG 390
           G+G   P++H G
Sbjct: 372 GDGAYLPITHVG 368

[Close]

BLAST of MELO3C013392 vs. TAIR10
Match: AT1G34070.1 (AT1G34070.1 Retrotransposon gag protein (InterPro:IPR005162))

HSP 1 Score: 71.6 bits (174), Expect = 1.2e-12
Identity = 65/258 (25.19%), Postives = 120/258 (46.51%), Query Frame = 1


Query: 20  IFLLSNICNLISMRLD--STNFVLWKFQLTAILKAHKLYGFIDGTNPCPPRTNNSSSTST 79
           I+ +SNI + I + LD   +N+  W+        +  + G IDGT               
Sbjct: 10  IYGVSNIKSHIPVMLDIEESNYDAWRELFLTHCLSFDVMGHIDGT--------------L 69

Query: 80  VPPQSNPSYEDWIAKDQALMTVINATLSPEAL-AYVVGSTSSKQVWDVLAKLYSSGSRSN 139
           +P  +N    +W  +D  +   +  TL+P+      V S++S+ +W  +   + +   + 
Sbjct: 70  LPTNANDV--NWQKRDGIVKLSLYGTLTPKQFQGSFVTSSTSRDIWLRIKNQFRNNKDAR 129

Query: 140 VVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLANVSTFINEEDLLIYALNGLPNEYNTF 199
            + L S+L+T     D  +  Y +++K++ D L NV   + + +L++Y LNGL  +++  
Sbjct: 130 ALRLDSELRT-KDIGDMRVADYYRKMKKLADSLRNVDVPVTDRNLVMYVLNGLNPKFDNI 189

Query: 200 RTSMRTRSQPVTFEELHVLLRAEESALAKQSKGDDSYNQPTVLLSSSQSLLSC--APTFD 259
              ++ R    +F++   +L+ EE  L +  K + ++    V  SSS ++L+C  AP   
Sbjct: 190 INVIKHRQPFPSFDDAATMLQEEEDRLKRAIKPNPTH----VDHSSSSTVLACSEAPPV- 245

Query: 260 NNFVRGNGHGKHY-GHGR 272
            NF R  G+   Y G GR
Sbjct: 250 TNFQRSGGNQMGYRGRGR 245

[Close]

BLAST of MELO3C013392 vs. TAIR10
Match: AT5G48050.1 (AT5G48050.1 Retrotransposon gag protein (InterPro:IPR005162))

HSP 1 Score: 71.2 bits (173), Expect = 1.6e-12
Identity = 59/266 (22.18%), Postives = 118/266 (44.36%), Query Frame = 1


Query: 30  ISMRLDSTNFVLWKFQLTAILKAHKLYGFIDGTNPCPPRTNNSSSTSTVPPQSNPSYEDW 89
           +++ L+  N+ +W+     +  +  + G IDG++   P T                   W
Sbjct: 24  VTLDLNKLNYDVWRELFETLCLSFGVLGHIDGSSTPTPMTEKR----------------W 83

Query: 90  IAKDQALMTVINATLSPEALAYVVG-STSSKQVWDVLAKLYSSGSRSNVVNLKSDLQTIY 149
             +D  +   I  T++   L  ++    +++ +W  L  L+     +  +  +++L+T  
Sbjct: 84  KERDGLVKMWIYGTITDSLLDTIIKVGCTARDLWLSLENLFRDNKEARALQFENELRTT- 143

Query: 150 KKPDESIDAYIKRIKEIKDKLANVSTFINEEDLLIYALNGLPNEYNTFRTSMRTRSQPVT 209
              D S+  Y +++K + D L NV + I++  L+++ LNGL  +Y+     ++ +S   +
Sbjct: 144 TIDDLSVHEYCQKLKSLSDLLTNVDSPISDRVLVMHLLNGLTEKYDYILNVIKHKSPFPS 203

Query: 210 FEELHVLLRAEESALAKQSKGDDSY-NQPTVLLSSSQSLLSCAPTFDNNFVRGNGHGKHY 269
           F E   +L  EES L+ +SK   S+ N P     S  ++L   P     + +   H  + 
Sbjct: 204 FTEARSMLLMEESRLSNKSKSSLSHTNHP-----SLSNVLFTVPRQQERYPQ-EYHNNNS 263

Query: 270 GHGRFSFDAQTRGHGSSPEQKSVHDN 294
             GR     + RG GSS  + + ++N
Sbjct: 264 NMGRGRSKKKNRGGGSSDGRYNNNNN 266

[Close]

BLAST of MELO3C013392 vs. NCBI nr
Match: gi|659094341|ref|XP_008448008.1| (PREDICTED: retrovirus-related Pol polyprotein from transposon TNT 1-94 isoform X3 [Cucumis melo])

HSP 1 Score: 805.4 bits (2079), Expect = 4.4e-230
Identity = 400/400 (100.00%), Postives = 400/400 (100.00%), Query Frame = 1


Query: 1   MSSSTTLPSSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFID 60
           MSSSTTLPSSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFID
Sbjct: 1   MSSSTTLPSSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFID 60

Query: 61  GTNPCPPRTNNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQ 120
           GTNPCPPRTNNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQ
Sbjct: 61  GTNPCPPRTNNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQ 120

Query: 121 VWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLANVSTFINEED 180
           VWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLANVSTFINEED
Sbjct: 121 VWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLANVSTFINEED 180

Query: 181 LLIYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALAKQSKGDDSYNQPTVLL 240
           LLIYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALAKQSKGDDSYNQPTVLL
Sbjct: 181 LLIYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALAKQSKGDDSYNQPTVLL 240

Query: 241 SSSQSLLSCAPTFDNNFVRGNGHGKHYGHGRFSFDAQTRGHGSSPEQKSVHDNHATCQIC 300
           SSSQSLLSCAPTFDNNFVRGNGHGKHYGHGRFSFDAQTRGHGSSPEQKSVHDNHATCQIC
Sbjct: 241 SSSQSLLSCAPTFDNNFVRGNGHGKHYGHGRFSFDAQTRGHGSSPEQKSVHDNHATCQIC 300

Query: 301 SRRGHTALDCFNRMNYNFQGRHPPQQLAAMVASQNNAFLSIVNSSSLTDSGCNTRITSDM 360
           SRRGHTALDCFNRMNYNFQGRHPPQQLAAMVASQNNAFLSIVNSSSLTDSGCNTRITSDM
Sbjct: 301 SRRGHTALDCFNRMNYNFQGRHPPQQLAAMVASQNNAFLSIVNSSSLTDSGCNTRITSDM 360

Query: 361 NYVSLAPEYNGEEQVGIGNGQTRPMSHSGQVFGKIFVPKA 401
           NYVSLAPEYNGEEQVGIGNGQTRPMSHSGQVFGKIFVPKA
Sbjct: 361 NYVSLAPEYNGEEQVGIGNGQTRPMSHSGQVFGKIFVPKA 400

[Close]

BLAST of MELO3C013392 vs. NCBI nr
Match: gi|659094339|ref|XP_008448007.1| (PREDICTED: retrovirus-related Pol polyprotein from transposon TNT 1-94 isoform X2 [Cucumis melo])

HSP 1 Score: 783.9 bits (2023), Expect = 1.4e-223
Identity = 389/389 (100.00%), Postives = 389/389 (100.00%), Query Frame = 1


Query: 1   MSSSTTLPSSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFID 60
           MSSSTTLPSSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFID
Sbjct: 1   MSSSTTLPSSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFID 60

Query: 61  GTNPCPPRTNNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQ 120
           GTNPCPPRTNNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQ
Sbjct: 61  GTNPCPPRTNNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQ 120

Query: 121 VWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLANVSTFINEED 180
           VWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLANVSTFINEED
Sbjct: 121 VWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLANVSTFINEED 180

Query: 181 LLIYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALAKQSKGDDSYNQPTVLL 240
           LLIYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALAKQSKGDDSYNQPTVLL
Sbjct: 181 LLIYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALAKQSKGDDSYNQPTVLL 240

Query: 241 SSSQSLLSCAPTFDNNFVRGNGHGKHYGHGRFSFDAQTRGHGSSPEQKSVHDNHATCQIC 300
           SSSQSLLSCAPTFDNNFVRGNGHGKHYGHGRFSFDAQTRGHGSSPEQKSVHDNHATCQIC
Sbjct: 241 SSSQSLLSCAPTFDNNFVRGNGHGKHYGHGRFSFDAQTRGHGSSPEQKSVHDNHATCQIC 300

Query: 301 SRRGHTALDCFNRMNYNFQGRHPPQQLAAMVASQNNAFLSIVNSSSLTDSGCNTRITSDM 360
           SRRGHTALDCFNRMNYNFQGRHPPQQLAAMVASQNNAFLSIVNSSSLTDSGCNTRITSDM
Sbjct: 301 SRRGHTALDCFNRMNYNFQGRHPPQQLAAMVASQNNAFLSIVNSSSLTDSGCNTRITSDM 360

Query: 361 NYVSLAPEYNGEEQVGIGNGQTRPMSHSG 390
           NYVSLAPEYNGEEQVGIGNGQTRPMSHSG
Sbjct: 361 NYVSLAPEYNGEEQVGIGNGQTRPMSHSG 389

[Close]

BLAST of MELO3C013392 vs. NCBI nr
Match: gi|659094337|ref|XP_008448006.1| (PREDICTED: retrovirus-related Pol polyprotein from transposon TNT 1-94 isoform X1 [Cucumis melo])

HSP 1 Score: 783.9 bits (2023), Expect = 1.4e-223
Identity = 389/389 (100.00%), Postives = 389/389 (100.00%), Query Frame = 1


Query: 1   MSSSTTLPSSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFID 60
           MSSSTTLPSSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFID
Sbjct: 1   MSSSTTLPSSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFID 60

Query: 61  GTNPCPPRTNNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQ 120
           GTNPCPPRTNNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQ
Sbjct: 61  GTNPCPPRTNNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQ 120

Query: 121 VWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLANVSTFINEED 180
           VWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLANVSTFINEED
Sbjct: 121 VWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLANVSTFINEED 180

Query: 181 LLIYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALAKQSKGDDSYNQPTVLL 240
           LLIYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALAKQSKGDDSYNQPTVLL
Sbjct: 181 LLIYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALAKQSKGDDSYNQPTVLL 240

Query: 241 SSSQSLLSCAPTFDNNFVRGNGHGKHYGHGRFSFDAQTRGHGSSPEQKSVHDNHATCQIC 300
           SSSQSLLSCAPTFDNNFVRGNGHGKHYGHGRFSFDAQTRGHGSSPEQKSVHDNHATCQIC
Sbjct: 241 SSSQSLLSCAPTFDNNFVRGNGHGKHYGHGRFSFDAQTRGHGSSPEQKSVHDNHATCQIC 300

Query: 301 SRRGHTALDCFNRMNYNFQGRHPPQQLAAMVASQNNAFLSIVNSSSLTDSGCNTRITSDM 360
           SRRGHTALDCFNRMNYNFQGRHPPQQLAAMVASQNNAFLSIVNSSSLTDSGCNTRITSDM
Sbjct: 301 SRRGHTALDCFNRMNYNFQGRHPPQQLAAMVASQNNAFLSIVNSSSLTDSGCNTRITSDM 360

Query: 361 NYVSLAPEYNGEEQVGIGNGQTRPMSHSG 390
           NYVSLAPEYNGEEQVGIGNGQTRPMSHSG
Sbjct: 361 NYVSLAPEYNGEEQVGIGNGQTRPMSHSG 389

[Close]

BLAST of MELO3C013392 vs. NCBI nr
Match: gi|778722841|ref|XP_011658579.1| (PREDICTED: uncharacterized protein LOC105436058 isoform X2 [Cucumis sativus])

HSP 1 Score: 761.5 bits (1965), Expect = 7.2e-217
Identity = 380/400 (95.00%), Postives = 389/400 (97.25%), Query Frame = 1


Query: 1   MSSSTTLPSSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFID 60
           MSSSTTLPSSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKL+GF+D
Sbjct: 1   MSSSTTLPSSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLFGFVD 60

Query: 61  GTNPCPPRTNNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQ 120
           GTNPCP    + S+TSTVPPQ+NP YEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQ
Sbjct: 61  GTNPCPQ--TSPSTTSTVPPQTNPLYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQ 120

Query: 121 VWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLANVSTFINEED 180
           VWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLANVSTFINEED
Sbjct: 121 VWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLANVSTFINEED 180

Query: 181 LLIYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALAKQSKGDDSYNQPTVLL 240
           LLIYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALAKQSK DDSYNQPTVLL
Sbjct: 181 LLIYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALAKQSKCDDSYNQPTVLL 240

Query: 241 SSSQSLLSCAPTFDNNFVRGNGHGKHYGHGRFSFDAQTRGHGSSPEQKSVHDNHATCQIC 300
           SSSQSLLSCAPTF+NNFVRGNGHGK+YGHGRFSFDAQTRGHG S EQK VHDNHATCQIC
Sbjct: 241 SSSQSLLSCAPTFNNNFVRGNGHGKNYGHGRFSFDAQTRGHGLSQEQKPVHDNHATCQIC 300

Query: 301 SRRGHTALDCFNRMNYNFQGRHPPQQLAAMVASQNNAFLSIVNSSSLTDSGCNTRITSDM 360
           SRRGHTALDCFNRMNYNFQGRHPPQQLAAMVASQNNAFLSIVNSSSLTDSGCNT ITSDM
Sbjct: 301 SRRGHTALDCFNRMNYNFQGRHPPQQLAAMVASQNNAFLSIVNSSSLTDSGCNTHITSDM 360

Query: 361 NYVSLAPEYNGEEQVGIGNGQTRPMSHSGQVFGKIFVPKA 401
           NYVSLAPEYNGEEQVG+GNGQTRP+SHSGQVFGKIFVPKA
Sbjct: 361 NYVSLAPEYNGEEQVGVGNGQTRPISHSGQVFGKIFVPKA 398

[Close]

BLAST of MELO3C013392 vs. NCBI nr
Match: gi|778722837|ref|XP_011658578.1| (PREDICTED: uncharacterized protein LOC105436058 isoform X1 [Cucumis sativus])

HSP 1 Score: 740.0 bits (1909), Expect = 2.3e-210
Identity = 369/389 (94.86%), Postives = 378/389 (97.17%), Query Frame = 1


Query: 1   MSSSTTLPSSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFID 60
           MSSSTTLPSSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKL+GF+D
Sbjct: 1   MSSSTTLPSSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLFGFVD 60

Query: 61  GTNPCPPRTNNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQ 120
           GTNPCP    + S+TSTVPPQ+NP YEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQ
Sbjct: 61  GTNPCPQ--TSPSTTSTVPPQTNPLYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQ 120

Query: 121 VWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLANVSTFINEED 180
           VWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLANVSTFINEED
Sbjct: 121 VWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLANVSTFINEED 180

Query: 181 LLIYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALAKQSKGDDSYNQPTVLL 240
           LLIYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALAKQSK DDSYNQPTVLL
Sbjct: 181 LLIYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALAKQSKCDDSYNQPTVLL 240

Query: 241 SSSQSLLSCAPTFDNNFVRGNGHGKHYGHGRFSFDAQTRGHGSSPEQKSVHDNHATCQIC 300
           SSSQSLLSCAPTF+NNFVRGNGHGK+YGHGRFSFDAQTRGHG S EQK VHDNHATCQIC
Sbjct: 241 SSSQSLLSCAPTFNNNFVRGNGHGKNYGHGRFSFDAQTRGHGLSQEQKPVHDNHATCQIC 300

Query: 301 SRRGHTALDCFNRMNYNFQGRHPPQQLAAMVASQNNAFLSIVNSSSLTDSGCNTRITSDM 360
           SRRGHTALDCFNRMNYNFQGRHPPQQLAAMVASQNNAFLSIVNSSSLTDSGCNT ITSDM
Sbjct: 301 SRRGHTALDCFNRMNYNFQGRHPPQQLAAMVASQNNAFLSIVNSSSLTDSGCNTHITSDM 360

Query: 361 NYVSLAPEYNGEEQVGIGNGQTRPMSHSG 390
           NYVSLAPEYNGEEQVG+GNGQTRP+SHSG
Sbjct: 361 NYVSLAPEYNGEEQVGVGNGQTRPISHSG 387

The following BLAST results are available for this feature:

BLAST of MELO3C013392 vs. TrEMBL


Match Name	E-value	Identity	Description
I7K8K8_9ROSA	3.2e-46	30.49	T4.5 protein OS=Malus x robusta GN=T4.5 PE=4 SV=1	[more]
A5AXT5_VITVI	2.1e-45	33.86	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026810 PE=4 SV=1	[more]
J7G0P5_ROSRU	1.9e-43	31.58	Retrotransposon polyprotein OS=Rosa rugosa PE=4 SV=1	[more]
V9GZT4_MAIZE	1.6e-42	31.22	Copia-like retrotransposon Hopscotch polyprotein OS=Zea mays GN=gag PE=4 SV=1	[more]
Q94KV0_ARATH	2.4e-41	29.84	Polyprotein OS=Arabidopsis thaliana PE=4 SV=1	[more]

BLAST of MELO3C013392 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G34070.1	1.2e-12	25.19	Retrotransposon gag protein (InterPro:IPR005162)	[more]
AT5G48050.1	1.6e-12	22.18	Retrotransposon gag protein (InterPro:IPR005162)	[more]

BLAST of MELO3C013392 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659094341\|ref\|XP_008448008.1\|	4.4e-230	100.00	PREDICTED: retrovirus-related Pol polyprotein from transposon TNT 1-94 isoform X...	[more]
gi\|659094339\|ref\|XP_008448007.1\|	1.4e-223	100.00	PREDICTED: retrovirus-related Pol polyprotein from transposon TNT 1-94 isoform X...	[more]
gi\|659094337\|ref\|XP_008448006.1\|	1.4e-223	100.00	PREDICTED: retrovirus-related Pol polyprotein from transposon TNT 1-94 isoform X...	[more]
gi\|778722841\|ref\|XP_011658579.1\|	7.2e-217	95.00	PREDICTED: uncharacterized protein LOC105436058 isoform X2 [Cucumis sativus]	[more]
gi\|778722837\|ref\|XP_011658578.1\|	2.3e-210	94.86	PREDICTED: uncharacterized protein LOC105436058 isoform X1 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU64555	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C013392T1	MELO3C013392T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU64555	MU64555	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 22..392 score: 4.7
None	No IPR available	PANTHER	PTHR11439:SF185	SUBFAMILY NOT NAMED	coord: 22..392 score: 4.7
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 89..224 score: 3.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C013392	Bhi05G001518	Wax gourd	mewgoB213
MELO3C013392	Cucsa.382030	Cucumber (Gy14) v1	cgymeB622
MELO3C013392	CmoCh11G017150	Cucurbita moschata (Rifu)	cmomeB091
MELO3C013392	Cp4.1LG04g05210	Cucurbita pepo (Zucchini)	cpemeB610
MELO3C013392	CsGy7G000500	Cucumber (Gy14) v2	cgybmeB469
MELO3C013392	Carg05685	Silver-seed gourd	carmeB0988
MELO3C013392	CsaV3_7G000640	Cucumber (Chinese Long) v3	cucmeB549

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C013392	Wild cucumber (PI 183967)	cpimeB102
MELO3C013392	Wild cucumber (PI 183967)	cpimeB539
MELO3C013392	Cucumber (Chinese Long) v2	cumeB531
MELO3C013392	Watermelon (Charleston Gray)	mewcgB190
MELO3C013392	Watermelon (Charleston Gray)	mewcgB196
MELO3C013392	Watermelon (97103) v1	mewmB239
MELO3C013392	Watermelon (97103) v1	mewmB252
MELO3C013392	Cucurbita pepo (Zucchini)	cpemeB224
MELO3C013392	Cucurbita pepo (Zucchini)	cpemeB272
MELO3C013392	Cucurbita pepo (Zucchini)	cpemeB684
MELO3C013392	Bottle gourd (USVL1VR-Ls)	lsimeB064
MELO3C013392	Bottle gourd (USVL1VR-Ls)	lsimeB096
MELO3C013392	Cucumber (Gy14) v2	cgybmeB088
MELO3C013392	Cucumber (Gy14) v2	cgybmeB092
MELO3C013392	Silver-seed gourd	carmeB0321
MELO3C013392	Silver-seed gourd	carmeB0952
MELO3C013392	Cucumber (Chinese Long) v3	cucmeB106
MELO3C013392	Watermelon (97103) v2	mewmbB176
MELO3C013392	Watermelon (97103) v2	mewmbB179
MELO3C013392	Wax gourd	mewgoB231
MELO3C013392	Melon (DHL92) v3.5.1	memeB038
MELO3C013392	Cucumber (Gy14) v1	cgymeB302
MELO3C013392	Cucurbita maxima (Rimu)	cmameB092
MELO3C013392	Cucurbita maxima (Rimu)	cmameB462
MELO3C013392	Cucurbita maxima (Rimu)	cmameB510
MELO3C013392	Cucurbita maxima (Rimu)	cmameB563
MELO3C013392	Cucurbita moschata (Rifu)	cmomeB453
MELO3C013392	Cucurbita moschata (Rifu)	cmomeB503
MELO3C013392	Cucurbita moschata (Rifu)	cmomeB552