Carg05685 (gene) Silver-seed gourd

Overview
NameCarg05685
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationCucurbita_argyrosperma_scaffold_033 : 419771 .. 420889 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTCCTCTAATAGTTCATCCTCTTCTTCGACCGAGACAAACTTGCTCTCACCGATTGTTCTGTTGTCGAACATCTGCAACCTGATATCGATAAAGCTCGACTCGACGAATTATGTCCTTTGGAAGTTTCAGTTGACAACACTTTTGAAAGCTCATAAACTTTTTGGCTTTATTGATGGTACTCAACCATGTCCGATATCGAATCCTTCGTACGACGATTGGTTTGCTAAGGATCAAGCTCTTATGACAGTCATAAATGCTACACTTTCACCTGAGGCTTTGGCATATGTGGTTGGTAGCACTACTTCTAAACAGGTTTGGAATGTTCTTGCAAAGCTTTATTCTTCTAGTTCAAGGTCTAATGTAGTGAATTTGAAGTCTGATCTACAAACTATTTCCAAGAAGTCTGATGAATCTATTGATGCCTATATTAAACGGATTAAGGAGATCAAGGACAAGCTTGCTAATGTTTCTACTGTTGTCAATGATGAGGATCTTCTTATCTATGCTCTAAATGGCCTACCAACCGAGTATAATACTTTTCGAACGTCGATGCGTACGCGTTCTACGCCTGTTACTTTTGAAGAACTTCATGTTCTTCTAAAAGCTGAGGAATCAGCTCTTGCAAAACAGTCTAAGCGTGATGATTTGTGTAAACAACCAACTGCTTTACTTGCTTCTTCTCAATCTCTTATGTCTTATGCTTCTACTTTTAATAATAACTTTGTTCGAGGTCGTGGACGTGGACGTGGACATGGACATGGATGTTCTTCTTTTGATACTCAAGGTCGCGGGGGTGGTTCTTCCCAACAGCAGCAATTGGTTGTTGCTAATAATCATTCATCTTGTCAGATTTGTTTACGTCGTGGCCATATTGCGCTCGACTGTTTCAATCGTATGAACTATAATTTTCATGGACGCCACCCTCCACATCACCTTGCTGCAATGGTTGCATCCCAGAATAATGCTTTTCTGTCTATTGTTAATTCTGATATGAATTATCTTTCTCTTGCATCTGGATATCATGGTGAAGAACAAGTTGGCGTTGGTAGTGGACAGTCTCTGCCTATTTCTCATTCAGGTTGTGGTACTTTTGAAACTCCTCCTCCTCCTTGA

mRNA sequence

ATGGATTCCTCTAATAGTTCATCCTCTTCTTCGACCGAGACAAACTTGCTCTCACCGATTGTTCTGTTGTCGAACATCTGCAACCTGATATCGATAAAGCTCGACTCGACGAATTATGTCCTTTGGAAGTTTCAGTTGACAACACTTTTGAAAGCTCATAAACTTTTTGGCTTTATTGATGGTACTCAACCATGTCCGATATCGAATCCTTCGTACGACGATTGGTTTGCTAAGGATCAAGCTCTTATGACAGTCATAAATGCTACACTTTCACCTGAGGCTTTGGCATATGTGGTTGGTAGCACTACTTCTAAACAGGTTTGGAATGTTCTTGCAAAGCTTTATTCTTCTAGTTCAAGGTCTAATGTAGTGAATTTGAAGTCTGATCTACAAACTATTTCCAAGAAGTCTGATGAATCTATTGATGCCTATATTAAACGGATTAAGGAGATCAAGGACAAGCTTGCTAATGTTTCTACTGTTGTCAATGATGAGGATCTTCTTATCTATGCTCTAAATGGCCTACCAACCGAGTATAATACTTTTCGAACGTCGATGCGTACGCGTTCTACGCCTGTTACTTTTGAAGAACTTCATGTTCTTCTAAAAGCTGAGGAATCAGCTCTTGCAAAACAGTCTAAGCGTGATGATTTGTGTAAACAACCAACTGCTTTACTTGCTTCTTCTCAATCTCTTATGTCTTATGCTTCTACTTTTAATAATAACTTTGTTCGAGGTCGTGGACGTGGACGTGGACATGGACATGGATGTTCTTCTTTTGATACTCAAGGTCGCGGGGGTGGTTCTTCCCAACAGCAGCAATTGGTTGTTGCTAATAATCATTCATCTTGTCAGATTTGTTTACGTCGTGGCCATATTGCGCTCGACTGTTTCAATCGTATGAACTATAATTTTCATGGACGCCACCCTCCACATCACCTTGCTGCAATGGTTGCATCCCAGAATAATGCTTTTCTGTCTATTGTTAATTCTGATATGAATTATCTTTCTCTTGCATCTGGATATCATGGTGAAGAACAAGTTGGCGTTGGTAGTGGACAGTCTCTGCCTATTTCTCATTCAGGTTGTGGTACTTTTGAAACTCCTCCTCCTCCTTGA

Coding sequence (CDS)

ATGGATTCCTCTAATAGTTCATCCTCTTCTTCGACCGAGACAAACTTGCTCTCACCGATTGTTCTGTTGTCGAACATCTGCAACCTGATATCGATAAAGCTCGACTCGACGAATTATGTCCTTTGGAAGTTTCAGTTGACAACACTTTTGAAAGCTCATAAACTTTTTGGCTTTATTGATGGTACTCAACCATGTCCGATATCGAATCCTTCGTACGACGATTGGTTTGCTAAGGATCAAGCTCTTATGACAGTCATAAATGCTACACTTTCACCTGAGGCTTTGGCATATGTGGTTGGTAGCACTACTTCTAAACAGGTTTGGAATGTTCTTGCAAAGCTTTATTCTTCTAGTTCAAGGTCTAATGTAGTGAATTTGAAGTCTGATCTACAAACTATTTCCAAGAAGTCTGATGAATCTATTGATGCCTATATTAAACGGATTAAGGAGATCAAGGACAAGCTTGCTAATGTTTCTACTGTTGTCAATGATGAGGATCTTCTTATCTATGCTCTAAATGGCCTACCAACCGAGTATAATACTTTTCGAACGTCGATGCGTACGCGTTCTACGCCTGTTACTTTTGAAGAACTTCATGTTCTTCTAAAAGCTGAGGAATCAGCTCTTGCAAAACAGTCTAAGCGTGATGATTTGTGTAAACAACCAACTGCTTTACTTGCTTCTTCTCAATCTCTTATGTCTTATGCTTCTACTTTTAATAATAACTTTGTTCGAGGTCGTGGACGTGGACGTGGACATGGACATGGATGTTCTTCTTTTGATACTCAAGGTCGCGGGGGTGGTTCTTCCCAACAGCAGCAATTGGTTGTTGCTAATAATCATTCATCTTGTCAGATTTGTTTACGTCGTGGCCATATTGCGCTCGACTGTTTCAATCGTATGAACTATAATTTTCATGGACGCCACCCTCCACATCACCTTGCTGCAATGGTTGCATCCCAGAATAATGCTTTTCTGTCTATTGTTAATTCTGATATGAATTATCTTTCTCTTGCATCTGGATATCATGGTGAAGAACAAGTTGGCGTTGGTAGTGGACAGTCTCTGCCTATTTCTCATTCAGGTTGTGGTACTTTTGAAACTCCTCCTCCTCCTTGA

Protein sequence

MDSSNSSSSSSTETNLLSPIVLLSNICNLISIKLDSTNYVLWKFQLTTLLKAHKLFGFIDGTQPCPISNPSYDDWFAKDQALMTVINATLSPEALAYVVGSTTSKQVWNVLAKLYSSSSRSNVVNLKSDLQTISKKSDESIDAYIKRIKEIKDKLANVSTVVNDEDLLIYALNGLPTEYNTFRTSMRTRSTPVTFEELHVLLKAEESALAKQSKRDDLCKQPTALLASSQSLMSYASTFNNNFVRGRGRGRGHGHGCSSFDTQGRGGGSSQQQQLVVANNHSSCQICLRRGHIALDCFNRMNYNFHGRHPPHHLAAMVASQNNAFLSIVNSDMNYLSLASGYHGEEQVGVGSGQSLPISHSGCGTFETPPPP
Homology
[Close]
BLAST of Carg05685 vs. NCBI nr
Match: XP_016900446.1 (PREDICTED: uncharacterized protein LOC103490319 isoform X1 [Cucumis melo])

HSP 1 Score: 493.4 bits (1269), Expect = 6.6e-136
Identity = 271/395 (68.61%), Postives = 295/395 (74.68%), Query Frame = 0 

Query: 1   MDSSNSXXXXXXETNLLSPIVLLSNICNLISIKLDSTNYVLWKFQLTTLLKAHKLFGFID 60
           M SS +      E + LSPI LLSNICNLIS++LDSTN+VLWKFQLT +LKAHKL+GFID
Sbjct: 1   MSSSTTLPSSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFID 60

Query: 61  GTQPC--------------PISNPSYDDWFAKDQALMTVINATLSPEALAYVVGSTTSKQ 120
           GT PC              P SNPSY+DW AKDQALMTVINATLSPEALAYVVGST+SKQ
Sbjct: 61  GTNPCPPRTNNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQ 120

Query: 121 VWNVLAKLYSSSSRSNVVNLKSDLQTISKKSDESIDAYIKRIKEIKDKLANVSTVVNDED 180
           VW+VLAKLYSS SRSNVVNLKSDLQTI KK DESIDAYIKRIKEIKDKLANVST +N+ED
Sbjct: 121 VWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLANVSTFINEED 180

Query: 181 LLIYALNGLPTEYNTFRTSMRTRSTPVTFEELHVLLKAEESALAKQSKRDDLCKQPTALL 240
           LLIYALNGLP EYNTFRTSMRTRS PVTFEELHVLL+AEESALAKQSK DD   QPT LL
Sbjct: 181 LLIYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALAKQSKGDDSYNQPTVLL 240

Query: 241 ASSQSLMSYASTFNNNFVRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNHSSCQI 300
           +SSQSL+S A TF+NNFVRG                                 NH++CQI
Sbjct: 241 SSSQSLLSCAPTFDNNFVRG-NGHGKHYGHGRFSFDAQTRGHGSSPEQKSVHDNHATCQI 300

Query: 301 CLRRGHIALDCFNRMNYNFHGRHPPHHLAAMVASQNNAFLSIVN--------------SD 360
           C RRGH ALDCFNRMNYNF GRHPP  LAAMVASQNNAFLSIVN              SD
Sbjct: 301 CSRRGHTALDCFNRMNYNFQGRHPPQQLAAMVASQNNAFLSIVNSSSLTDSGCNTRITSD 360

Query: 361 MNYLSLASGYHGEEQVGVGSGQSLPISHSGCGTFE 368
           MNY+SLA  Y+GEEQVG+G+GQ+ P+SHSG   FE
Sbjct: 361 MNYVSLAPEYNGEEQVGIGNGQTRPMSHSGHFKFE 394

[Close]
BLAST of Carg05685 vs. NCBI nr
Match: XP_008448007.1 (PREDICTED: uncharacterized protein LOC103490319 isoform X2 [Cucumis melo])

HSP 1 Score: 493.4 bits (1269), Expect = 6.6e-136
Identity = 271/395 (68.61%), Postives = 295/395 (74.68%), Query Frame = 0 

Query: 1   MDSSNSXXXXXXETNLLSPIVLLSNICNLISIKLDSTNYVLWKFQLTTLLKAHKLFGFID 60
           M SS +      E + LSPI LLSNICNLIS++LDSTN+VLWKFQLT +LKAHKL+GFID
Sbjct: 1   MSSSTTLPSSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFID 60

Query: 61  GTQPC--------------PISNPSYDDWFAKDQALMTVINATLSPEALAYVVGSTTSKQ 120
           GT PC              P SNPSY+DW AKDQALMTVINATLSPEALAYVVGST+SKQ
Sbjct: 61  GTNPCPPRTNNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQ 120

Query: 121 VWNVLAKLYSSSSRSNVVNLKSDLQTISKKSDESIDAYIKRIKEIKDKLANVSTVVNDED 180
           VW+VLAKLYSS SRSNVVNLKSDLQTI KK DESIDAYIKRIKEIKDKLANVST +N+ED
Sbjct: 121 VWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLANVSTFINEED 180

Query: 181 LLIYALNGLPTEYNTFRTSMRTRSTPVTFEELHVLLKAEESALAKQSKRDDLCKQPTALL 240
           LLIYALNGLP EYNTFRTSMRTRS PVTFEELHVLL+AEESALAKQSK DD   QPT LL
Sbjct: 181 LLIYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALAKQSKGDDSYNQPTVLL 240

Query: 241 ASSQSLMSYASTFNNNFVRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNHSSCQI 300
           +SSQSL+S A TF+NNFVRG                                 NH++CQI
Sbjct: 241 SSSQSLLSCAPTFDNNFVRG-NGHGKHYGHGRFSFDAQTRGHGSSPEQKSVHDNHATCQI 300

Query: 301 CLRRGHIALDCFNRMNYNFHGRHPPHHLAAMVASQNNAFLSIVN--------------SD 360
           C RRGH ALDCFNRMNYNF GRHPP  LAAMVASQNNAFLSIVN              SD
Sbjct: 301 CSRRGHTALDCFNRMNYNFQGRHPPQQLAAMVASQNNAFLSIVNSSSLTDSGCNTRITSD 360

Query: 361 MNYLSLASGYHGEEQVGVGSGQSLPISHSGCGTFE 368
           MNY+SLA  Y+GEEQVG+G+GQ+ P+SHSG   FE
Sbjct: 361 MNYVSLAPEYNGEEQVGIGNGQTRPMSHSGHFKFE 394

[Close]
BLAST of Carg05685 vs. NCBI nr
Match: XP_011658578.1 (PREDICTED: uncharacterized protein LOC105436058 isoform X1 [Cucumis sativus])

HSP 1 Score: 492.7 bits (1267), Expect = 1.1e-135
Identity = 270/388 (69.59%), Postives = 293/388 (75.52%), Query Frame = 0 

Query: 1   MDSSNSXXXXXXETNLLSPIVLLSNICNLISIKLDSTNYVLWKFQLTTLLKAHKLFGFID 60
           M SS +      E + LSPI LLSNICNLIS++LDSTN+VLWKFQLT +LKAHKLFGF+D
Sbjct: 1   MSSSTTLPSSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLFGFVD 60

Query: 61  GTQPCPISNPS------------YDDWFAKDQALMTVINATLSPEALAYVVGSTTSKQVW 120
           GT PCP ++PS            Y+DW AKDQALMTVINATLSPEALAYVVGST+SKQVW
Sbjct: 61  GTNPCPQTSPSTTSTVPPQTNPLYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQVW 120

Query: 121 NVLAKLYSSSSRSNVVNLKSDLQTISKKSDESIDAYIKRIKEIKDKLANVSTVVNDEDLL 180
           +VLAKLYSS SRSNVVNLKSDLQTI KK DESIDAYIKRIKEIKDKLANVST +N+EDLL
Sbjct: 121 DVLAKLYSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLANVSTFINEEDLL 180

Query: 181 IYALNGLPTEYNTFRTSMRTRSTPVTFEELHVLLKAEESALAKQSKRDDLCKQPTALLAS 240
           IYALNGLP EYNTFRTSMRTRS PVTFEELHVLL+AEESALAKQSK DD   QPT LL+S
Sbjct: 181 IYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALAKQSKCDDSYNQPTVLLSS 240

Query: 241 SQSLMSYASTFNNNFVRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNHSSCQICL 300
           SQSL+S A TFNNNFVRG                                 NH++CQIC 
Sbjct: 241 SQSLLSCAPTFNNNFVRG-NGHGKNYGHGRFSFDAQTRGHGLSQEQKPVHDNHATCQICS 300

Query: 301 RRGHIALDCFNRMNYNFHGRHPPHHLAAMVASQNNAFLSIVN--------------SDMN 360
           RRGH ALDCFNRMNYNF GRHPP  LAAMVASQNNAFLSIVN              SDMN
Sbjct: 301 RRGHTALDCFNRMNYNFQGRHPPQQLAAMVASQNNAFLSIVNSSSLTDSGCNTHITSDMN 360

Query: 361 YLSLASGYHGEEQVGVGSGQSLPISHSG 363
           Y+SLA  Y+GEEQVGVG+GQ+ PISHSG
Sbjct: 361 YVSLAPEYNGEEQVGVGNGQTRPISHSG 387

[Close]
BLAST of Carg05685 vs. NCBI nr
Match: XP_011658579.1 (PREDICTED: uncharacterized protein LOC105436058 isoform X2 [Cucumis sativus])

HSP 1 Score: 492.7 bits (1267), Expect = 1.1e-135
Identity = 270/388 (69.59%), Postives = 293/388 (75.52%), Query Frame = 0 

Query: 1   MDSSNSXXXXXXETNLLSPIVLLSNICNLISIKLDSTNYVLWKFQLTTLLKAHKLFGFID 60
           M SS +      E + LSPI LLSNICNLIS++LDSTN+VLWKFQLT +LKAHKLFGF+D
Sbjct: 1   MSSSTTLPSSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLFGFVD 60

Query: 61  GTQPCPISNPS------------YDDWFAKDQALMTVINATLSPEALAYVVGSTTSKQVW 120
           GT PCP ++PS            Y+DW AKDQALMTVINATLSPEALAYVVGST+SKQVW
Sbjct: 61  GTNPCPQTSPSTTSTVPPQTNPLYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQVW 120

Query: 121 NVLAKLYSSSSRSNVVNLKSDLQTISKKSDESIDAYIKRIKEIKDKLANVSTVVNDEDLL 180
           +VLAKLYSS SRSNVVNLKSDLQTI KK DESIDAYIKRIKEIKDKLANVST +N+EDLL
Sbjct: 121 DVLAKLYSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLANVSTFINEEDLL 180

Query: 181 IYALNGLPTEYNTFRTSMRTRSTPVTFEELHVLLKAEESALAKQSKRDDLCKQPTALLAS 240
           IYALNGLP EYNTFRTSMRTRS PVTFEELHVLL+AEESALAKQSK DD   QPT LL+S
Sbjct: 181 IYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALAKQSKCDDSYNQPTVLLSS 240

Query: 241 SQSLMSYASTFNNNFVRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNHSSCQICL 300
           SQSL+S A TFNNNFVRG                                 NH++CQIC 
Sbjct: 241 SQSLLSCAPTFNNNFVRG-NGHGKNYGHGRFSFDAQTRGHGLSQEQKPVHDNHATCQICS 300

Query: 301 RRGHIALDCFNRMNYNFHGRHPPHHLAAMVASQNNAFLSIVN--------------SDMN 360
           RRGH ALDCFNRMNYNF GRHPP  LAAMVASQNNAFLSIVN              SDMN
Sbjct: 301 RRGHTALDCFNRMNYNFQGRHPPQQLAAMVASQNNAFLSIVNSSSLTDSGCNTHITSDMN 360

Query: 361 YLSLASGYHGEEQVGVGSGQSLPISHSG 363
           Y+SLA  Y+GEEQVGVG+GQ+ PISHSG
Sbjct: 361 YVSLAPEYNGEEQVGVGNGQTRPISHSG 387

[Close]
BLAST of Carg05685 vs. NCBI nr
Match: XP_008448008.1 (PREDICTED: uncharacterized protein LOC103490319 isoform X3 [Cucumis melo])

HSP 1 Score: 491.1 bits (1263), Expect = 3.3e-135
Identity = 269/390 (68.97%), Postives = 293/390 (75.13%), Query Frame = 0 

Query: 1   MDSSNSXXXXXXETNLLSPIVLLSNICNLISIKLDSTNYVLWKFQLTTLLKAHKLFGFID 60
           M SS +      E + LSPI LLSNICNLIS++LDSTN+VLWKFQLT +LKAHKL+GFID
Sbjct: 1   MSSSTTLPSSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFID 60

Query: 61  GTQPC--------------PISNPSYDDWFAKDQALMTVINATLSPEALAYVVGSTTSKQ 120
           GT PC              P SNPSY+DW AKDQALMTVINATLSPEALAYVVGST+SKQ
Sbjct: 61  GTNPCPPRTNNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQ 120

Query: 121 VWNVLAKLYSSSSRSNVVNLKSDLQTISKKSDESIDAYIKRIKEIKDKLANVSTVVNDED 180
           VW+VLAKLYSS SRSNVVNLKSDLQTI KK DESIDAYIKRIKEIKDKLANVST +N+ED
Sbjct: 121 VWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLANVSTFINEED 180

Query: 181 LLIYALNGLPTEYNTFRTSMRTRSTPVTFEELHVLLKAEESALAKQSKRDDLCKQPTALL 240
           LLIYALNGLP EYNTFRTSMRTRS PVTFEELHVLL+AEESALAKQSK DD   QPT LL
Sbjct: 181 LLIYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALAKQSKGDDSYNQPTVLL 240

Query: 241 ASSQSLMSYASTFNNNFVRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNHSSCQI 300
           +SSQSL+S A TF+NNFVRG                                 NH++CQI
Sbjct: 241 SSSQSLLSCAPTFDNNFVRG-NGHGKHYGHGRFSFDAQTRGHGSSPEQKSVHDNHATCQI 300

Query: 301 CLRRGHIALDCFNRMNYNFHGRHPPHHLAAMVASQNNAFLSIVN--------------SD 360
           C RRGH ALDCFNRMNYNF GRHPP  LAAMVASQNNAFLSIVN              SD
Sbjct: 301 CSRRGHTALDCFNRMNYNFQGRHPPQQLAAMVASQNNAFLSIVNSSSLTDSGCNTRITSD 360

Query: 361 MNYLSLASGYHGEEQVGVGSGQSLPISHSG 363
           MNY+SLA  Y+GEEQVG+G+GQ+ P+SHSG
Sbjct: 361 MNYVSLAPEYNGEEQVGIGNGQTRPMSHSG 389

[Close]
BLAST of Carg05685 vs. TAIR10
Match: AT1G34070.1 (Retrotransposon gag protein (InterPro:IPR005162))

HSP 1 Score: 68.6 bits (166), Expect = 9.6e-12
Identity = 52/195 (26.67%), Postives = 98/195 (50.26%), Query Frame = 0 

Query: 23  LSNICNLISIKLD--STNYVLWKFQLTTLLKAHKLFGFIDGTQPCPISNPSYDDWFAKDQ 82
           +SNI + I + LD   +NY  W+    T   +  + G IDGT     +N +  +W  +D 
Sbjct: 13  VSNIKSHIPVMLDIEESNYDAWRELFLTHCLSFDVMGHIDGT--LLPTNANDVNWQKRDG 72

Query: 83  ALMTVINATLSPEAL-AYVVGSTTSKQVWNVLAKLYSSSSRSNVVNLKSDLQTISKKSDE 142
            +   +  TL+P+      V S+TS+ +W  +   + ++  +  + L S+L+T     D 
Sbjct: 73  IVKLSLYGTLTPKQFQGSFVTSSTSRDIWLRIKNQFRNNKDARALRLDSELRT-KDIGDM 132

Query: 143 SIDAYIKRIKEIKDKLANVSTVVNDEDLLIYALNGLPTEYNTFRTSMRTRSTPVTFEELH 202
            +  Y +++K++ D L NV   V D +L++Y LNGL  +++     ++ R    +F++  
Sbjct: 133 RVADYYRKMKKLADSLRNVDVPVTDRNLVMYVLNGLNPKFDNIINVIKHRQPFPSFDDAA 192

Query: 203 VLLKAEESALAKQSK 215
            +L+ EE  L +  K
Sbjct: 193 TMLQEEEDRLKRAIK 204

[Close]
BLAST of Carg05685 vs. TAIR10
Match: AT1G21280.1 (Retrotransposon gag protein (InterPro:IPR005162))

HSP 1 Score: 55.1 bits (131), Expect = 1.1e-07
Identity = 32/128 (25.00%), Postives = 67/128 (52.34%), Query Frame = 0 

Query: 35  DSTNYVLWKFQLTTLLKAHKLFGFIDGTQPCPIS-NPSYDDWFAKDQALMTVINATLSPE 94
           D  NYV WK +  + L+  K FGFIDGT P P   +P Y  W   +  +M  +  +++ +
Sbjct: 38  DEDNYVAWKIRFRSFLRVTKKFGFIDGTLPKPDPFSPLYQPWEQCNAMVMYWLMNSMTDK 97

Query: 95  ALAYVVGSTTSKQVWNVLAKLYSSSSRSNVVNLKSDLQTISKKSDESIDAYIKRIKEIKD 154
            L  V+ + T+ ++W  L +++       +  L+  L T+ ++  +S++ Y  ++ ++  
Sbjct: 98  LLESVMYAETAHKMWEDLRRVFVPCVDLKIYQLRRRLATL-RQGGDSVEEYFGKLSKVWM 157

Query: 155 KLANVSTV 162
           +L+  + +
Sbjct: 158 ELSEYAPI 164

[Close]
BLAST of Carg05685 vs. Swiss-Prot
Match: sp|Q94HW2|POLR1_ARATH (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 3.8e-18
Identity = 125/381 (32.81%), Postives = 186/381 (48.82%), Query Frame = 0 

Query: 21  VLLSNICNLISIKLDSTNYVLWKFQLTTLLKAHKLFGFID----------GTQPCPISNP 80
           +L  N+ N+   KL STNY++W  Q+  L   ++L GF+D          GT   P  NP
Sbjct: 15  ILNVNMSNV--TKLTSTNYLMWSRQVHALFDGYELAGFLDGSTTMPPATIGTDAAPRVNP 74

Query: 81  SYDDWFAKDQALMTVINATLSPEALAYVVGSTTSKQVWNVLAKLYSSSSRSNVVNLKSDL 140
            Y  W  +D+ + + +   +S      V  +TT+ Q+W  L K+Y++ S  +V  L++ L
Sbjct: 75  DYTRWKRQDKLIYSAVLGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLRTQL 134

Query: 141 QTISKKSDESIDAYIKRIKEIKDKLANVSTVVNDEDLLIYALNGLPTEYNTFRTSMRTRS 200
           +  + K  ++ID Y++ +    D+LA +   ++ ++ +   L  LP EY      +  + 
Sbjct: 135 KQWT-KGTKTIDDYMQGLVTRFDQLALLGKPMDHDEQVERVLENLPEEYKPVIDQIAAKD 194

Query: 201 TPVTFEELHVLLKAEESALAKQSKRDDLCKQPTALLASSQSLMSYASTFNNNFVRGXXXX 260
           TP T  E+H  L   ES +        L      ++  + + +S+           XXXX
Sbjct: 195 TPPTLTEIHERLLNHESKI--------LAVSSATVIPITANAVSHXXXXXXXXXXXXXXX 254

Query: 261 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXNH--SSCQICLRRGHIALDCFNRMNY--NFH 320
           XXXXXXXXXXXXXXXXXXXXXXXXXXXX       CQIC  +GH A  C    ++  + +
Sbjct: 255 XXXXXXXXXXXXXXXXXXXXXXXXXXXXSKPYLGKCQICGVQGHSAKRCSQLQHFLSSVN 314

Query: 321 GRHPPHHLA-----AMVA-----SQNNAFLSI-----VNSDMNYLSLASGYHGEEQVGVG 373
            + PP         A +A     S NN  L       + SD N LSL   Y G + V V 
Sbjct: 315 SQQPPSPFTPWQPRANLALGSPYSSNNWLLDSGATHHITSDFNNLSLHQPYTGGDDVMVA 374

[Close]
BLAST of Carg05685 vs. Swiss-Prot
Match: sp|Q9ZT94|POLR2_ARATH (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 7.5e-14
Identity = 113/383 (29.50%), Postives = 172/383 (44.91%), Query Frame = 0 

Query: 13  ETNLLSPIVLLSNICNLISIKLDSTNYVLWKFQLTTLLKAHKLFGFIDGTQPCPIS---- 72
           E  L++  +L  N+ N+   KL STNY++W  Q+  L   ++L GF+DG+ P P +    
Sbjct: 7   EIVLVNTNILNVNMSNV--TKLTSTNYLMWSRQVHALFDGYELAGFLDGSTPMPPATIGT 66

Query: 73  ------NPSYDDWFAKDQALMTVINATLSPEALAYVVGSTTSKQVWNVLAKLYSSSSRSN 132
                 NP Y  W  +D+ + + I   +S      V  +TT+ Q+W  L K+Y++ S  +
Sbjct: 67  DAVPRVNPDYTRWRRQDKLIYSAILGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGH 126

Query: 133 VVNLKSDLQTISKKSDESIDAYIKRIKEIKDKLANVSTVVNDEDLLIYALNGLPTEYNTF 192
           V  L+                +I R     D+LA +   ++ ++ +   L  LP +Y   
Sbjct: 127 VTQLR----------------FITRF----DQLALLGKPMDHDEQVERVLENLPDDYKPV 186

Query: 193 RTSMRTRSTPVTFEELHVLLKAEESALAKQSKRDDLCKQPTALLASSQSLMSYASTFNNN 252
              +  + TP +  E+H  L   ES L        L      ++  + +++++       
Sbjct: 187 IDQIAAKDTPPSLTEIHERLINRESKL--------LALNSAEVVPITANVVTHRXXXXXX 246

Query: 253 FVRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNHSSCQICLRRGHIALDCFNRMN 312
               XXXXXXXXXXXXXXXXXXXXXXXXXXXX         CQIC  +GH A  C     
Sbjct: 247 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQPKPYLGRCQICSVQGHSAKRCPQLHQ 306

Query: 313 YN-----------FHGRHPPHHLAAMVASQNNAFL------SIVNSDMNYLSLASGYHGE 369
           +            F    P  +LA       N +L        + SD N LS    Y G 
Sbjct: 307 FQSTTNQQQSTSPFTPWQPRANLAVNSPYNANNWLLDSGATHHITSDFNNLSFHQPYTGG 359

[Close]
BLAST of Carg05685 vs. Swiss-Prot
Match: sp|P10978|POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.5e-06
Identity = 46/200 (23.00%), Postives = 86/200 (43.00%), Query Frame = 0 

Query: 42  WKFQLTTLLKAHKLFGFIDGTQPCPISNPSYDDWFAKDQALMTVINATLSPEALAYVVGS 101
           W+ ++  LL    L   +D     P      +DW   D+   + I   LS + +  ++  
Sbjct: 20  WQRRMRDLLIQQGLHKVLDVDSKKP-DTMKAEDWADLDERAASAIRLHLSDDVVNNIIDE 79

Query: 102 TTSKQVWNVLAKLYSSSSRSNVVNLKSDLQTISKKSDESIDAYIKRIKEIKDKLANVSTV 161
            T++ +W  L  LY S + +N + LK  L  +      +  +++     +  +LAN+   
Sbjct: 80  DTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSHLNVFNGLITQLANLGVK 139

Query: 162 VNDEDLLIYALNGLPTEYNTFRTSMRTRSTPVTFEELHVLLKAEESALAKQSKRDDLCKQ 221
           + +ED  I  LN LP+ Y+   T++    T +  +++   L   E    K  K+ +   Q
Sbjct: 140 IEEEDKAILLLNSLPSSYDNLATTILHGKTTIELKDVTSALLLNE----KMRKKPE--NQ 199

Query: 222 PTALLASSQSLMSYASTFNN 242
             AL+   +   SY  + NN
Sbjct: 200 GQALITEGRG-RSYQRSSNN 211

[Close]
BLAST of Carg05685 vs. TrEMBL
Match: tr|A0A1S3BI58|A0A1S3BI58_CUCME (uncharacterized protein LOC103490319 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490319 PE=4 SV=1)

HSP 1 Score: 493.4 bits (1269), Expect = 4.4e-136
Identity = 271/395 (68.61%), Postives = 295/395 (74.68%), Query Frame = 0 

Query: 1   MDSSNSXXXXXXETNLLSPIVLLSNICNLISIKLDSTNYVLWKFQLTTLLKAHKLFGFID 60
           M SS +      E + LSPI LLSNICNLIS++LDSTN+VLWKFQLT +LKAHKL+GFID
Sbjct: 1   MSSSTTLPSSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFID 60

Query: 61  GTQPC--------------PISNPSYDDWFAKDQALMTVINATLSPEALAYVVGSTTSKQ 120
           GT PC              P SNPSY+DW AKDQALMTVINATLSPEALAYVVGST+SKQ
Sbjct: 61  GTNPCPPRTNNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQ 120

Query: 121 VWNVLAKLYSSSSRSNVVNLKSDLQTISKKSDESIDAYIKRIKEIKDKLANVSTVVNDED 180
           VW+VLAKLYSS SRSNVVNLKSDLQTI KK DESIDAYIKRIKEIKDKLANVST +N+ED
Sbjct: 121 VWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLANVSTFINEED 180

Query: 181 LLIYALNGLPTEYNTFRTSMRTRSTPVTFEELHVLLKAEESALAKQSKRDDLCKQPTALL 240
           LLIYALNGLP EYNTFRTSMRTRS PVTFEELHVLL+AEESALAKQSK DD   QPT LL
Sbjct: 181 LLIYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALAKQSKGDDSYNQPTVLL 240

Query: 241 ASSQSLMSYASTFNNNFVRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNHSSCQI 300
           +SSQSL+S A TF+NNFVRG                                 NH++CQI
Sbjct: 241 SSSQSLLSCAPTFDNNFVRG-NGHGKHYGHGRFSFDAQTRGHGSSPEQKSVHDNHATCQI 300

Query: 301 CLRRGHIALDCFNRMNYNFHGRHPPHHLAAMVASQNNAFLSIVN--------------SD 360
           C RRGH ALDCFNRMNYNF GRHPP  LAAMVASQNNAFLSIVN              SD
Sbjct: 301 CSRRGHTALDCFNRMNYNFQGRHPPQQLAAMVASQNNAFLSIVNSSSLTDSGCNTRITSD 360

Query: 361 MNYLSLASGYHGEEQVGVGSGQSLPISHSGCGTFE 368
           MNY+SLA  Y+GEEQVG+G+GQ+ P+SHSG   FE
Sbjct: 361 MNYVSLAPEYNGEEQVGIGNGQTRPMSHSGHFKFE 394

[Close]
BLAST of Carg05685 vs. TrEMBL
Match: tr|A0A1S4DWT9|A0A1S4DWT9_CUCME (uncharacterized protein LOC103490319 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490319 PE=4 SV=1)

HSP 1 Score: 493.4 bits (1269), Expect = 4.4e-136
Identity = 271/395 (68.61%), Postives = 295/395 (74.68%), Query Frame = 0 

Query: 1   MDSSNSXXXXXXETNLLSPIVLLSNICNLISIKLDSTNYVLWKFQLTTLLKAHKLFGFID 60
           M SS +      E + LSPI LLSNICNLIS++LDSTN+VLWKFQLT +LKAHKL+GFID
Sbjct: 1   MSSSTTLPSSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFID 60

Query: 61  GTQPC--------------PISNPSYDDWFAKDQALMTVINATLSPEALAYVVGSTTSKQ 120
           GT PC              P SNPSY+DW AKDQALMTVINATLSPEALAYVVGST+SKQ
Sbjct: 61  GTNPCPPRTNNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQ 120

Query: 121 VWNVLAKLYSSSSRSNVVNLKSDLQTISKKSDESIDAYIKRIKEIKDKLANVSTVVNDED 180
           VW+VLAKLYSS SRSNVVNLKSDLQTI KK DESIDAYIKRIKEIKDKLANVST +N+ED
Sbjct: 121 VWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLANVSTFINEED 180

Query: 181 LLIYALNGLPTEYNTFRTSMRTRSTPVTFEELHVLLKAEESALAKQSKRDDLCKQPTALL 240
           LLIYALNGLP EYNTFRTSMRTRS PVTFEELHVLL+AEESALAKQSK DD   QPT LL
Sbjct: 181 LLIYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALAKQSKGDDSYNQPTVLL 240

Query: 241 ASSQSLMSYASTFNNNFVRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNHSSCQI 300
           +SSQSL+S A TF+NNFVRG                                 NH++CQI
Sbjct: 241 SSSQSLLSCAPTFDNNFVRG-NGHGKHYGHGRFSFDAQTRGHGSSPEQKSVHDNHATCQI 300

Query: 301 CLRRGHIALDCFNRMNYNFHGRHPPHHLAAMVASQNNAFLSIVN--------------SD 360
           C RRGH ALDCFNRMNYNF GRHPP  LAAMVASQNNAFLSIVN              SD
Sbjct: 301 CSRRGHTALDCFNRMNYNFQGRHPPQQLAAMVASQNNAFLSIVNSSSLTDSGCNTRITSD 360

Query: 361 MNYLSLASGYHGEEQVGVGSGQSLPISHSGCGTFE 368
           MNY+SLA  Y+GEEQVG+G+GQ+ P+SHSG   FE
Sbjct: 361 MNYVSLAPEYNGEEQVGIGNGQTRPMSHSGHFKFE 394

[Close]
BLAST of Carg05685 vs. TrEMBL
Match: tr|A0A1S3BIR3|A0A1S3BIR3_CUCME (uncharacterized protein LOC103490319 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103490319 PE=4 SV=1)

HSP 1 Score: 491.1 bits (1263), Expect = 2.2e-135
Identity = 269/390 (68.97%), Postives = 293/390 (75.13%), Query Frame = 0 

Query: 1   MDSSNSXXXXXXETNLLSPIVLLSNICNLISIKLDSTNYVLWKFQLTTLLKAHKLFGFID 60
           M SS +      E + LSPI LLSNICNLIS++LDSTN+VLWKFQLT +LKAHKL+GFID
Sbjct: 1   MSSSTTLPSSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFID 60

Query: 61  GTQPC--------------PISNPSYDDWFAKDQALMTVINATLSPEALAYVVGSTTSKQ 120
           GT PC              P SNPSY+DW AKDQALMTVINATLSPEALAYVVGST+SKQ
Sbjct: 61  GTNPCPPRTNNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQ 120

Query: 121 VWNVLAKLYSSSSRSNVVNLKSDLQTISKKSDESIDAYIKRIKEIKDKLANVSTVVNDED 180
           VW+VLAKLYSS SRSNVVNLKSDLQTI KK DESIDAYIKRIKEIKDKLANVST +N+ED
Sbjct: 121 VWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKLANVSTFINEED 180

Query: 181 LLIYALNGLPTEYNTFRTSMRTRSTPVTFEELHVLLKAEESALAKQSKRDDLCKQPTALL 240
           LLIYALNGLP EYNTFRTSMRTRS PVTFEELHVLL+AEESALAKQSK DD   QPT LL
Sbjct: 181 LLIYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALAKQSKGDDSYNQPTVLL 240

Query: 241 ASSQSLMSYASTFNNNFVRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNHSSCQI 300
           +SSQSL+S A TF+NNFVRG                                 NH++CQI
Sbjct: 241 SSSQSLLSCAPTFDNNFVRG-NGHGKHYGHGRFSFDAQTRGHGSSPEQKSVHDNHATCQI 300

Query: 301 CLRRGHIALDCFNRMNYNFHGRHPPHHLAAMVASQNNAFLSIVN--------------SD 360
           C RRGH ALDCFNRMNYNF GRHPP  LAAMVASQNNAFLSIVN              SD
Sbjct: 301 CSRRGHTALDCFNRMNYNFQGRHPPQQLAAMVASQNNAFLSIVNSSSLTDSGCNTRITSD 360

Query: 361 MNYLSLASGYHGEEQVGVGSGQSLPISHSG 363
           MNY+SLA  Y+GEEQVG+G+GQ+ P+SHSG
Sbjct: 361 MNYVSLAPEYNGEEQVGIGNGQTRPMSHSG 389

[Close]
BLAST of Carg05685 vs. TrEMBL
Match: tr|A0A2N9GSW0|A0A2N9GSW0_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS33388 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 3.0e-60
Identity = 171/385 (44.42%), Postives = 249/385 (64.68%), Query Frame = 0 

Query: 18  SPIVLLSNICNLISIKLDSTNYVLWKFQLTTLLKAHKLFGFIDGTQPCP----------- 77
           +P++LLSNI NL+S+KLD +NYVLWK+Q+T++LKA+ +  F+DGTQ CP           
Sbjct: 23  TPMILLSNISNLVSVKLDQSNYVLWKYQITSILKAYAILSFVDGTQLCPPQFVTNSEGTL 82

Query: 78  ISNPSYDDWFAKDQALMTVINATLSPEALAYVVGSTTSKQVWNVLAKLYSSSSRSNVVNL 137
             N  Y  W ++DQ L+T+IN+TLSP AL+ VVG TT+  VW++L K Y+S+SRSN++NL
Sbjct: 83  QENLLYQQWISRDQGLLTLINSTLSPTALSLVVGQTTAHGVWSILEKRYTSASRSNILNL 142

Query: 138 KSDLQTISKKSDESIDAYIKRIKEIKDKLANVSTVVNDEDLLIYALNGLPTEYNTFRTSM 197
           K DL  I K++++S++ +++++K+ +D+LA V   +++E++L   L GLP EY+TF T++
Sbjct: 143 KMDLHNIKKETNDSVNTFLQKVKDARDRLAAVGVQIDNEEILHIVLRGLPHEYHTFSTAI 202

Query: 198 RTRSTPVTFEELHVLLKAEESALAKQSKRDDLCKQPT--ALLAS---SQSLMSYAST--- 257
           RTR+   +FE++HVLL A+E +L       DL K  +  A++A+   + +L SY      
Sbjct: 203 RTRNDATSFEDIHVLLTADEQSLKSSI---DLAKDHSHMAMVANTNRNNALFSYQGNRGR 262

Query: 258 FNNNFVRG---------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNHSSCQICLR 317
             NNF RG         XXXXXXXXXXXXXXXXXXXXXXXXXXXX         CQIC +
Sbjct: 263 GRNNFTRGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQSYNQRPVCQICGK 322

Query: 318 RGHIALDCFNRMNYNFHGRHPPHHLAAMVASQN------NAFLSIVNS------DMNYLS 363
            GH A+DC++RM+Y + G+ PP  LAAM A+ N      + ++S   +      D++ + 
Sbjct: 323 TGHAAIDCYHRMDYAYQGKQPPSKLAAMAATYNAQTSDQSYWISDTGATDHFTPDLSTIP 382

[Close]
BLAST of Carg05685 vs. TrEMBL
Match: tr|A0A2N9G7E3|A0A2N9G7E3_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS23257 PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 3.9e-60
Identity = 170/380 (44.74%), Postives = 235/380 (61.84%), Query Frame = 0 

Query: 18  SPIVLLSNICNLISIKLDSTNYVLWKFQLTTLLKAHKLFGFIDGTQPC-----------P 77
           +P++LLSNI NL+S+KLD TNY+LWKFQ+T+ LKA+KL   +DG+ PC           P
Sbjct: 8   TPMILLSNITNLVSVKLDQTNYMLWKFQITSTLKAYKLLDVVDGSYPCPEMYNRDTNGNP 67

Query: 78  ISNPSYDDWFAKDQALMTVINATLSPEALAYVVGSTTSKQVWNVLAKLYSSSSRSNVVNL 137
           I N  +  W  KDQAL+++I ATLSP ALA V+G  ++K VW+ L K ++S SRSNV++L
Sbjct: 68  ILNSDFIQWDTKDQALISMICATLSPSALALVIGQKSAKGVWDTLEKRFTSLSRSNVLSL 127

Query: 138 KSDLQTISKKSDESIDAYIKRIKEIKDKLANVSTVVNDEDLLIYALNGLPTEYNTFRTSM 197
           K DL +I KK++ESI+ Y+++IKE KDKL  V   +  E++L   L+GLPTE+  F ++M
Sbjct: 128 KRDLNSI-KKNNESINIYMQKIKECKDKLEAVGVFIEAEEMLYIVLDGLPTEFYPFCSAM 187

Query: 198 RTRSTPVTFEELHVLLKAEESALAK--QSKRDDL-----CKQPTALLASSQSLMSYASTF 257
           RTR+  ++FEELHVL+  EE +L K  +S +D L      + P     ++  +       
Sbjct: 188 RTRNDSISFEELHVLMLGEEKSLNKNTESSKDSLHLAMVGQGPKGTTGNTPMIQFXXXXX 247

Query: 258 NNNFVRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNHSS-------CQICLRRGH 317
                  XXXXXXXXXXXXXXXXXXXXX             ++S       CQIC + GH
Sbjct: 248 XXXXXXXXXXXXXXXXXXXXXXXXXXXXRGGFNNLSPQPSTYNSQPSSRPTCQICYKNGH 307

Query: 318 IALDCFNRMNYNFHGRHPPHHLAAMV----ASQNNAFLSIVNS------DMNYLSLASGY 363
            ALDC++RM++ F G+HPP  LAAM     AS +N ++S   +      D+  L  A  Y
Sbjct: 308 TALDCYHRMDFAFQGKHPPTKLAAMAFSSNASSSNCWVSDTGATDHFTPDLANLQQARDY 367

The following BLAST results are available for this feature:
BLAST of Carg05685 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016900446.16.6e-13668.61PREDICTED: uncharacterized protein LOC103490319 isoform X1 [Cucumis melo][more]
XP_008448007.16.6e-13668.61PREDICTED: uncharacterized protein LOC103490319 isoform X2 [Cucumis melo][more]
XP_011658578.11.1e-13569.59PREDICTED: uncharacterized protein LOC105436058 isoform X1 [Cucumis sativus][more]
XP_011658579.11.1e-13569.59PREDICTED: uncharacterized protein LOC105436058 isoform X2 [Cucumis sativus][more]
XP_008448008.13.3e-13568.97PREDICTED: uncharacterized protein LOC103490319 isoform X3 [Cucumis melo][more]
BLAST of Carg05685 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G34070.19.6e-1226.67Retrotransposon gag protein (InterPro:IPR005162)[more]
AT1G21280.11.1e-0725.00Retrotransposon gag protein (InterPro:IPR005162)[more]
BLAST of Carg05685 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q94HW2|POLR1_ARATH3.8e-1832.81Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
sp|Q9ZT94|POLR2_ARATH7.5e-1429.50Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
sp|P10978|POLX_TOBAC1.5e-0623.00Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
BLAST of Carg05685 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BI58|A0A1S3BI58_CUCME4.4e-13668.61uncharacterized protein LOC103490319 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A1S4DWT9|A0A1S4DWT9_CUCME4.4e-13668.61uncharacterized protein LOC103490319 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A1S3BIR3|A0A1S3BIR3_CUCME2.2e-13568.97uncharacterized protein LOC103490319 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A2N9GSW0|A0A2N9GSW0_FAGSY3.0e-6044.42Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS33388 PE=4 SV=1[more]
tr|A0A2N9G7E3|A0A2N9G7E3_FAGSY3.9e-6044.74Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS23257 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR029472UBN2_3
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg05685-RACarg05685-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029472Gag-polypeptide of LTR copia-typePFAMPF14244Retrotran_gag_3coord: 28..66
e-value: 1.2E-9
score: 37.7
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 77..209
e-value: 1.5E-26
score: 92.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 350..372
NoneNo IPR availablePANTHERPTHR11439:SF232SUBFAMILY NOT NAMEDcoord: 14..302
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 14..302