MELO3C013108 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C013108
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	ATP-dependent RNA helicase RhlB
Location	chr1 : 11661391 .. 11661764 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACATGATGAAAAATGTTGCATCGTCAATTACTTTGGAAGACGTAATTAAGAAGCACAAAGTCCCATCTACTCATGCATATTCTTTAAAACATGTAGTGGACAAGACAATTAAGATGGGGAAGTTGGAAGGCTCAGTTGTGGTAAGAAAATTATTAACTTTTGTCCTTAAAGTGATCTTGTGGTTTCTTATCCATTAATGGTTTACTGTTTTGGTTGTTAGGCTGTTAGAGCTGCTCTGCGAAAGCTTGAGGAGGAAGGATGTTGCATTGAGGATGCAGAAGCTGTTTGTGAGCCTGAAGTCCTTAACCACATATTTAAGTGGAAGGTGCTTACAATTTCTTATTGCACTGTTCTAAAGAAACTTCCTTAG

mRNA sequence

ATGGACATGATGAAAAATGTTGCATCGTCAATTACTTTGGAAGACGTAATTAAGAAGCACAAAGTCCCATCTACTCATGCATATTCTTTAAAACATGTAGTGGACAAGACAATTAAGATGGGGAAGTTGGAAGGCTCAGTTGTGGCTGTTAGAGCTGCTCTGCGAAAGCTTGAGGAGGAAGGATGTTGCATTGAGGATGCAGAAGCTGTTTGTGAGCCTGAAGTCCTTAACCACATATTTAAGTGGAAGGTGCTTACAATTTCTTATTGCACTGTTCTAAAGAAACTTCCTTAG

Coding sequence (CDS)

ATGGACATGATGAAAAATGTTGCATCGTCAATTACTTTGGAAGACGTAATTAAGAAGCACAAAGTCCCATCTACTCATGCATATTCTTTAAAACATGTAGTGGACAAGACAATTAAGATGGGGAAGTTGGAAGGCTCAGTTGTGGCTGTTAGAGCTGCTCTGCGAAAGCTTGAGGAGGAAGGATGTTGCATTGAGGATGCAGAAGCTGTTTGTGAGCCTGAAGTCCTTAACCACATATTTAAGTGGAAGGTGCTTACAATTTCTTATTGCACTGTTCTAAAGAAACTTCCTTAG

Protein sequence

MDMMKNVASSITLEDVIKKHKVPSTHAYSLKHVVDKTIKMGKLEGSVVAVRAALRKLEEEGCCIEDAEAVCEPEVLNHIFKWKVLTISYCTVLKKLP*

Homology

[Close]

BLAST of MELO3C013108 vs. Swiss-Prot
Match: EDM2_ARATH (Protein ENHANCED DOWNY MILDEW 2 OS=Arabidopsis thaliana GN=EDM2 PE=1 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.1e-17
Identity = 48/82 (58.54%), Postives = 60/82 (73.17%), Query Frame = 1


Query: 3   MMKNVASSITLEDVIKKHKVPSTHA-YSLKHVVDKTIKMGKLEGSVVAVRAALRKLEEEG 62
           +MK     IT+  ++KK K+ ST + +S ++VVDKTI MGK+EGSV A+R AL+KLEE G
Sbjct: 609 VMKKATEEITMGTILKKFKIQSTMSTHSTRNVVDKTITMGKVEGSVQAIRTALKKLEEGG 668

Query: 63  CCIEDAEAVCEPEVLNHIFKWK 84
             IEDA+AVCEPEVL+ I KWK
Sbjct: 669 -NIEDAKAVCEPEVLSQILKWK 689

[Close]

BLAST of MELO3C013108 vs. TrEMBL
Match: A0A061FCK2_THECC (Enhanced downy mildew 2, putative OS=Theobroma cacao GN=TCM_030759 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 8.4e-25
Identity = 61/81 (75.31%), Postives = 69/81 (85.19%), Query Frame = 1


Query: 3   MMKNVASSITLEDVIKKHKVPSTHAYSLKHVVDKTIKMGKLEGSVVAVRAALRKLEEEGC 62
           +MK V SSITLED+I KHKVPSTHAYS K VVD+TI +GK+EGSV AVR AL KL E+GC
Sbjct: 605 LMKEVESSITLEDIIAKHKVPSTHAYSSKSVVDRTITLGKIEGSVDAVRMALAKL-EDGC 664

Query: 63  CIEDAEAVCEPEVLNHIFKWK 84
            IEDA+AVCEPEVLN IFKW+
Sbjct: 665 NIEDAQAVCEPEVLNQIFKWQ 684

[Close]

BLAST of MELO3C013108 vs. TrEMBL
Match: A0A067KSR4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00983 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 7.9e-23
Identity = 55/81 (67.90%), Postives = 67/81 (82.72%), Query Frame = 1


Query: 3   MMKNVASSITLEDVIKKHKVPSTHAYSLKHVVDKTIKMGKLEGSVVAVRAALRKLEEEGC 62
           +MK  AS+IT+E V+KKH+ PSTHAYS K+ VDKTI  GK+EG+V AVR AL+KL E+GC
Sbjct: 614 LMKEAASTITMEKVMKKHETPSTHAYSSKNAVDKTITAGKVEGAVEAVRTALKKL-EDGC 673

Query: 63  CIEDAEAVCEPEVLNHIFKWK 84
             EDA+AVCEPEVLN +FKWK
Sbjct: 674 STEDAKAVCEPEVLNQVFKWK 693

[Close]

BLAST of MELO3C013108 vs. TrEMBL
Match: B9GJH8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s37070g PE=4 SV=2)

HSP 1 Score: 114.4 bits (285), Expect = 7.9e-23
Identity = 55/81 (67.90%), Postives = 70/81 (86.42%), Query Frame = 1


Query: 3   MMKNVASSITLEDVIKKHKVPSTHAYSLKHVVDKTIKMGKLEGSVVAVRAALRKLEEEGC 62
           ++K  ASSITL++VIKKH+VPSTH +S K+VVDK I +GK+EG+V AVR AL+KLEE+ C
Sbjct: 370 LVKEAASSITLDNVIKKHEVPSTHVHSSKNVVDKNITLGKVEGTVEAVRTALKKLEEK-C 429

Query: 63  CIEDAEAVCEPEVLNHIFKWK 84
            IEDA+AVCEP+VLN +FKWK
Sbjct: 430 SIEDAKAVCEPDVLNQVFKWK 449

[Close]

BLAST of MELO3C013108 vs. TrEMBL
Match: A0A067FFG4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g000582mg PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.8e-22
Identity = 50/81 (61.73%), Postives = 68/81 (83.95%), Query Frame = 1


Query: 3   MMKNVASSITLEDVIKKHKVPSTHAYSLKHVVDKTIKMGKLEGSVVAVRAALRKLEEEGC 62
           +MK+ ASS+ +E+++K+HK+PSTHAY+ K  VDK I +GK+EGSV A+R AL+KL+ +G 
Sbjct: 413 LMKDAASSVRMEEILKRHKIPSTHAYASKSAVDKAITLGKVEGSVEAIRTALKKLDVDGS 472

Query: 63  CIEDAEAVCEPEVLNHIFKWK 84
            IEDA+AVCEPEVL+ IFKWK
Sbjct: 473 SIEDAKAVCEPEVLSQIFKWK 493

[Close]

BLAST of MELO3C013108 vs. TrEMBL
Match: A0A067F4B4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g000582mg PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.8e-22
Identity = 50/81 (61.73%), Postives = 68/81 (83.95%), Query Frame = 1


Query: 3   MMKNVASSITLEDVIKKHKVPSTHAYSLKHVVDKTIKMGKLEGSVVAVRAALRKLEEEGC 62
           +MK+ ASS+ +E+++K+HK+PSTHAY+ K  VDK I +GK+EGSV A+R AL+KL+ +G 
Sbjct: 336 LMKDAASSVRMEEILKRHKIPSTHAYASKSAVDKAITLGKVEGSVEAIRTALKKLDVDGS 395

Query: 63  CIEDAEAVCEPEVLNHIFKWK 84
            IEDA+AVCEPEVL+ IFKWK
Sbjct: 396 SIEDAKAVCEPEVLSQIFKWK 416

[Close]

BLAST of MELO3C013108 vs. TAIR10
Match: AT5G55390.1 (AT5G55390.1 ENHANCED DOWNY MILDEW 2)

HSP 1 Score: 90.5 bits (223), Expect = 6.2e-19
Identity = 48/82 (58.54%), Postives = 60/82 (73.17%), Query Frame = 1


Query: 3   MMKNVASSITLEDVIKKHKVPSTHA-YSLKHVVDKTIKMGKLEGSVVAVRAALRKLEEEG 62
           +MK     IT+  ++KK K+ ST + +S ++VVDKTI MGK+EGSV A+R AL+KLEE G
Sbjct: 609 VMKKATEEITMGTILKKFKIQSTMSTHSTRNVVDKTITMGKVEGSVQAIRTALKKLEEGG 668

Query: 63  CCIEDAEAVCEPEVLNHIFKWK 84
             IEDA+AVCEPEVL+ I KWK
Sbjct: 669 -NIEDAKAVCEPEVLSQILKWK 689

[Close]

BLAST of MELO3C013108 vs. NCBI nr
Match: gi|659093754|ref|XP_008447701.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103490112 [Cucumis melo])

HSP 1 Score: 169.5 bits (428), Expect = 3.0e-39
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1


Query: 1   MDMMKNVASSITLEDVIKKHKVPSTHAYSLKHVVDKTIKMGKLEGSVVAVRAALRKLEEE 60
           MDMMKNVASSITLEDVIKKHKVPSTHAYSLKHVVDKTIKMGKLEGSVVAVRAALRKLEEE
Sbjct: 584 MDMMKNVASSITLEDVIKKHKVPSTHAYSLKHVVDKTIKMGKLEGSVVAVRAALRKLEEE 643

Query: 61  GCCIEDAEAVCEPEVLNHIFKWK 84
           GCCIEDAEAVCEPEVLNHIFKWK
Sbjct: 644 GCCIEDAEAVCEPEVLNHIFKWK 666

[Close]

BLAST of MELO3C013108 vs. NCBI nr
Match: gi|590606117|ref|XP_007020659.1| (Enhanced downy mildew 2, putative [Theobroma cacao])

HSP 1 Score: 120.9 bits (302), Expect = 1.2e-24
Identity = 61/81 (75.31%), Postives = 69/81 (85.19%), Query Frame = 1


Query: 3   MMKNVASSITLEDVIKKHKVPSTHAYSLKHVVDKTIKMGKLEGSVVAVRAALRKLEEEGC 62
           +MK V SSITLED+I KHKVPSTHAYS K VVD+TI +GK+EGSV AVR AL KL E+GC
Sbjct: 605 LMKEVESSITLEDIIAKHKVPSTHAYSSKSVVDRTITLGKIEGSVDAVRMALAKL-EDGC 664

Query: 63  CIEDAEAVCEPEVLNHIFKWK 84
            IEDA+AVCEPEVLN IFKW+
Sbjct: 665 NIEDAQAVCEPEVLNQIFKWQ 684

[Close]

BLAST of MELO3C013108 vs. NCBI nr
Match: gi|645241387|ref|XP_008227053.1| (PREDICTED: uncharacterized protein LOC103326593 [Prunus mume])

HSP 1 Score: 120.6 bits (301), Expect = 1.6e-24
Identity = 58/81 (71.60%), Postives = 70/81 (86.42%), Query Frame = 1


Query: 3   MMKNVASSITLEDVIKKHKVPSTHAYSLKHVVDKTIKMGKLEGSVVAVRAALRKLEEEGC 62
           +MK+ ASSITLEDVI+KHKVPSTHA+S K+ V++ I +GK+EGSV A+R ALRKL EEGC
Sbjct: 604 LMKDAASSITLEDVIRKHKVPSTHAFSSKNAVERNITLGKVEGSVEAIRTALRKL-EEGC 663

Query: 63  CIEDAEAVCEPEVLNHIFKWK 84
            IED+EAVC PE+LN IFKWK
Sbjct: 664 SIEDSEAVCAPEILNQIFKWK 683

[Close]

BLAST of MELO3C013108 vs. NCBI nr
Match: gi|802588554|ref|XP_012070951.1| (PREDICTED: protein ENHANCED DOWNY MILDEW 2 isoform X2 [Jatropha curcas])

HSP 1 Score: 114.4 bits (285), Expect = 1.1e-22
Identity = 55/81 (67.90%), Postives = 67/81 (82.72%), Query Frame = 1


Query: 3   MMKNVASSITLEDVIKKHKVPSTHAYSLKHVVDKTIKMGKLEGSVVAVRAALRKLEEEGC 62
           +MK  AS+IT+E V+KKH+ PSTHAYS K+ VDKTI  GK+EG+V AVR AL+KL E+GC
Sbjct: 462 LMKEAASTITMEKVMKKHETPSTHAYSSKNAVDKTITAGKVEGAVEAVRTALKKL-EDGC 521

Query: 63  CIEDAEAVCEPEVLNHIFKWK 84
             EDA+AVCEPEVLN +FKWK
Sbjct: 522 STEDAKAVCEPEVLNQVFKWK 541

[Close]

BLAST of MELO3C013108 vs. NCBI nr
Match: gi|566153202|ref|XP_002300345.2| (hypothetical protein POPTR_0001s37070g [Populus trichocarpa])

HSP 1 Score: 114.4 bits (285), Expect = 1.1e-22
Identity = 55/81 (67.90%), Postives = 70/81 (86.42%), Query Frame = 1


Query: 3   MMKNVASSITLEDVIKKHKVPSTHAYSLKHVVDKTIKMGKLEGSVVAVRAALRKLEEEGC 62
           ++K  ASSITL++VIKKH+VPSTH +S K+VVDK I +GK+EG+V AVR AL+KLEE+ C
Sbjct: 370 LVKEAASSITLDNVIKKHEVPSTHVHSSKNVVDKNITLGKVEGTVEAVRTALKKLEEK-C 429

Query: 63  CIEDAEAVCEPEVLNHIFKWK 84
            IEDA+AVCEP+VLN +FKWK
Sbjct: 430 SIEDAKAVCEPDVLNQVFKWK 449

The following BLAST results are available for this feature:

BLAST of MELO3C013108 vs. Swiss-Prot


Match Name	E-value	Identity	Description
EDM2_ARATH	1.1e-17	58.54	Protein ENHANCED DOWNY MILDEW 2 OS=Arabidopsis thaliana GN=EDM2 PE=1 SV=1	[more]

BLAST of MELO3C013108 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A061FCK2_THECC	8.4e-25	75.31	Enhanced downy mildew 2, putative OS=Theobroma cacao GN=TCM_030759 PE=4 SV=1	[more]
A0A067KSR4_JATCU	7.9e-23	67.90	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00983 PE=4 SV=1	[more]
B9GJH8_POPTR	7.9e-23	67.90	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s37070g PE=4 SV=2	[more]
A0A067FFG4_CITSI	1.8e-22	61.73	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g000582mg PE=4 SV=1	[more]
A0A067F4B4_CITSI	1.8e-22	61.73	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g000582mg PE=4 SV=1	[more]

BLAST of MELO3C013108 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G55390.1	6.2e-19	58.54	ENHANCED DOWNY MILDEW 2	[more]

BLAST of MELO3C013108 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659093754\|ref\|XP_008447701.1\|	3.0e-39	100.00	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103490112 [Cucumis me...	[more]
gi\|590606117\|ref\|XP_007020659.1\|	1.2e-24	75.31	Enhanced downy mildew 2, putative [Theobroma cacao]	[more]
gi\|645241387\|ref\|XP_008227053.1\|	1.6e-24	71.60	PREDICTED: uncharacterized protein LOC103326593 [Prunus mume]	[more]
gi\|802588554\|ref\|XP_012070951.1\|	1.1e-22	67.90	PREDICTED: protein ENHANCED DOWNY MILDEW 2 isoform X2 [Jatropha curcas]	[more]
gi\|566153202\|ref\|XP_002300345.2\|	1.1e-22	67.90	hypothetical protein POPTR_0001s37070g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050832	defense response to fungus
biological_process	GO:2000024	regulation of leaf development
biological_process	GO:0008150	biological_process
biological_process	GO:0010228	vegetative to reproductive phase transition of meristem
biological_process	GO:0007165	signal transduction
biological_process	GO:0070829	heterochromatin maintenance
biological_process	GO:1900363	regulation of mRNA polyadenylation
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0044030	regulation of DNA methylation
biological_process	GO:1900111	positive regulation of histone H3-K9 dimethylation
biological_process	GO:0061087	positive regulation of histone H3-K27 methylation
biological_process	GO:0009911	positive regulation of flower development
biological_process	GO:0031937	positive regulation of chromatin silencing
biological_process	GO:0090436	leaf pavement cell development
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C013108T1	MELO3C013108T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 40..60 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C013108	CsaV3_7G019860	Cucumber (Chinese Long) v3	cucmeB541
MELO3C013108	CsaV3_7G012760	Cucumber (Chinese Long) v3	cucmeB544

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C013108	Wax gourd	mewgoB255
MELO3C013108	Cucurbita maxima (Rimu)	cmameB018
MELO3C013108	Cucurbita maxima (Rimu)	cmameB395
MELO3C013108	Cucurbita moschata (Rifu)	cmomeB007
MELO3C013108	Cucurbita moschata (Rifu)	cmomeB386
MELO3C013108	Watermelon (Charleston Gray)	mewcgB186
MELO3C013108	Watermelon (97103) v1	mewmB212
MELO3C013108	Cucurbita pepo (Zucchini)	cpemeB503
MELO3C013108	Cucurbita pepo (Zucchini)	cpemeB713
MELO3C013108	Bottle gourd (USVL1VR-Ls)	lsimeB188
MELO3C013108	Cucumber (Gy14) v2	cgybmeB461
MELO3C013108	Silver-seed gourd	carmeB0872
MELO3C013108	Silver-seed gourd	carmeB0890
MELO3C013108	Watermelon (97103) v2	mewmbB233