MELO3C012761 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C012761
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Phosphoglycolate phosphatase
Location	chr1 : 23195728 .. 23196066 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGAGCATGTGGCAGTCACACCATCACCATGTATCAAGCTACAAATTTGGAGAGCTCCATTCAAAGTGAAAAGCCTCGCTCTAGGCAATCTCAGTTTTAAAAGAGAACCGAGGTTAACTGATTTTTCTTATTTGCTAACCTTAAGTTTTATCTTATCTAAGACAACCCTTCTTCCATTTTCTGCATTTAATATAAGCCCTAATTATGTTTGTTTTGTTTTTGTTTTTGTTTCTTGTATATCTAGTTTTGGAGTCTTGGAAAGATATGGTTAGGAACTGACTACTAAATTGTGAACTTATTTTTATGTGCAATAGTGCTGAGGGGTTAGAGAGAAAATAAGTATAAACTGAATGCATTGTTCATATTGGTTCTTCATATGTAGAAAGTACAATTGACGTTCTTTCAACTTTTTGTATTCTAGAAAATCCTCCTCTGAGAGCTATAAGTTCATAAGGATCTCAACTTGGAGAAGGCATGAGCTTATTGGTTCTTGTGGCTCAAACTTCATTGTAAATCCTGCTCCCAGGAAGACCTTCAGAGAGCATGCTTACCTAAGGTCTTTGGTAAATGTCGATGGAACAACAGCCTCTGAGGCAATTTTTGTTGATCAATTTCTTTTGATGACCAGTATATTTCTAACATATATGGCTGGAGTAATACCGGTACCAAAGTCTAATCAACATGGAAATATCAACTCTCAGACCAATTCAGTCTTAGATAACCAAACCTTTTCTGGTAGGTAAGGGTGCACAGTTTACAAGTTTGAGATTTGTTGTCGCTAACTAACATAATTTACTGTTTGCTCCATTGCTATTTGTTGTGTATATCTGCTCTTTTTGTCTGCTTCAGTTTATTTTGAGGTTTCATATTTTTTTTGTATATATTTATTATTGCAGTGGCATGAAGACTGATGGTCAAATTAATCCGAAGCATGCATTAGTTGTAGTTAAAGGAAAAATTTTGGACTTTCTAGATGCTTTTGAACGTAGGAAAAGTATGGAAACCGAGGTACTCGAATTTACAGAATGTCAGGCCAAGCGACCACTATGCTTGAATGCAATTGGTGAGGGTCCGAGGTTAAGATTGCTTTGGGCTTCTTTTCAACTAATCGAGGAAGAGGCAGGCATCTAA

mRNA sequence

ATGGCGGAGCATGTGGCAGTCACACCATCACCATGTATCAAGCTACAAATTTGGAGAGCTCCATTCAAAGTGAAAAGCCTCGCTCTAGGCAATCTCAGTTTTAAAAGAGAACCGAGAAAATCCTCCTCTGAGAGCTATAAGTTCATAAGGATCTCAACTTGGAGAAGGCATGAGCTTATTGGTTCTTGTGGCTCAAACTTCATTGTAAATCCTGCTCCCAGGAAGACCTTCAGAGAGCATGCTTACCTAAGGTCTTTGGTAAATGTCGATGGAACAACAGCCTCTGAGGCAATTTTTGTTGATCAATTTCTTTTGATGACCAGTATATTTCTAACATATATGGCTGGAGTAATACCGGTACCAAAGTCTAATCAACATGGAAATATCAACTCTCAGACCAATTCAGTCTTAGATAACCAAACCTTTTCTGGTAGTGGCATGAAGACTGATGGTCAAATTAATCCGAAGCATGCATTAGTTGTAGTTAAAGGAAAAATTTTGGACTTTCTAGATGCTTTTGAACGTAGGAAAAGTATGGAAACCGAGGTACTCGAATTTACAGAATGTCAGGCCAAGCGACCACTATGCTTGAATGCAATTGGTGAGGGTCCGAGGTTAAGATTGCTTTGGGCTTCTTTTCAACTAATCGAGGAAGAGGCAGGCATCTAA

Coding sequence (CDS)

ATGGCGGAGCATGTGGCAGTCACACCATCACCATGTATCAAGCTACAAATTTGGAGAGCTCCATTCAAAGTGAAAAGCCTCGCTCTAGGCAATCTCAGTTTTAAAAGAGAACCGAGAAAATCCTCCTCTGAGAGCTATAAGTTCATAAGGATCTCAACTTGGAGAAGGCATGAGCTTATTGGTTCTTGTGGCTCAAACTTCATTGTAAATCCTGCTCCCAGGAAGACCTTCAGAGAGCATGCTTACCTAAGGTCTTTGGTAAATGTCGATGGAACAACAGCCTCTGAGGCAATTTTTGTTGATCAATTTCTTTTGATGACCAGTATATTTCTAACATATATGGCTGGAGTAATACCGGTACCAAAGTCTAATCAACATGGAAATATCAACTCTCAGACCAATTCAGTCTTAGATAACCAAACCTTTTCTGGTAGTGGCATGAAGACTGATGGTCAAATTAATCCGAAGCATGCATTAGTTGTAGTTAAAGGAAAAATTTTGGACTTTCTAGATGCTTTTGAACGTAGGAAAAGTATGGAAACCGAGGTACTCGAATTTACAGAATGTCAGGCCAAGCGACCACTATGCTTGAATGCAATTGGTGAGGGTCCGAGGTTAAGATTGCTTTGGGCTTCTTTTCAACTAATCGAGGAAGAGGCAGGCATCTAA

Protein sequence

MAEHVAVTPSPCIKLQIWRAPFKVKSLALGNLSFKREPRKSSSESYKFIRISTWRRHELIGSCGSNFIVNPAPRKTFREHAYLRSLVNVDGTTASEAIFVDQFLLMTSIFLTYMAGVIPVPKSNQHGNINSQTNSVLDNQTFSGSGMKTDGQINPKHALVVVKGKILDFLDAFERRKSMETEVLEFTECQAKRPLCLNAIGEGPRLRLLWASFQLIEEEAGI*

Homology

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BLAST of MELO3C012761 vs. NCBI nr
Match: gi|659113968|ref|XP_008456845.1| (PREDICTED: uncharacterized protein LOC103496676 [Cucumis melo])

HSP 1 Score: 100.1 bits (248), Expect = 2.6e-18
Identity = 56/90 (62.22%), Postives = 65/90 (72.22%), Query Frame = 1


Query: 18  VMKSIVEGGSIPMKRIENEEQRKEIDPEEQRKKIETEEKVSEEQTKKIGIEEDISDRNKF 77
           +MKSIVEGGS PM+RIE +EQRKE         I+TEEKV EEQTKKIGIEEDISDR+KF
Sbjct: 1   MMKSIVEGGSTPMERIETKEQRKE---------IQTEEKVGEEQTKKIGIEEDISDRHKF 60

Query: 78  KKVELPRFSGTRSSIHLFFGPNRISKNINR 108
           KKVEL RFSG +    +F    RI +N  +
Sbjct: 61  KKVELQRFSGKKFDSFIF----RIKRNFQK 77

The following BLAST results are available for this feature:

BLAST of MELO3C012761 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659113968\|ref\|XP_008456845.1\|	2.6e-18	62.22	PREDICTED: uncharacterized protein LOC103496676 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C012761T2	MELO3C012761T2	mRNA
MELO3C012761T1	MELO3C012761T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36807	FAMILY NOT NAMED	coord: 1..219 score: 2.6

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C012761	Watermelon (97103) v2	mewmbB219
MELO3C012761	Wax gourd	mewgoB262
MELO3C012761	Cucumber (Gy14) v1	cgymeB082
MELO3C012761	Cucurbita moschata (Rifu)	cmomeB322
MELO3C012761	Wild cucumber (PI 183967)	cpimeB549
MELO3C012761	Cucumber (Chinese Long) v2	cumeB543
MELO3C012761	Watermelon (Charleston Gray)	mewcgB173
MELO3C012761	Watermelon (97103) v1	mewmB194
MELO3C012761	Cucurbita pepo (Zucchini)	cpemeB127
MELO3C012761	Bottle gourd (USVL1VR-Ls)	lsimeB201
MELO3C012761	Cucumber (Gy14) v2	cgybmeB481
MELO3C012761	Silver-seed gourd	carmeB0433
MELO3C012761	Cucumber (Chinese Long) v3	cucmeB560