MELO3C012508.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C012508.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
Descriptionprotein RADIALIS-like 1
Locationchr01 : 19043403 .. 19043648 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCAATGTCTGCTCATGGGTCAACTCAATGGACTGCAATTGAAAACAAAGCCTTTGAGAAAGCTTTGGCAATTTATGACAAAGACACACCTGAGAGATGGCTCAATGTTGCAAAGGCCATTGGTGGAAAAACTGAAGAGGATGTCAAGAGGCATTATCAACTTCTTCTTGAGGATGTTAACCATATTGAGAATGGTCAAATTCCTTTTCCCTATCGAAACTCTACGAGGTCGAGTCGCTGA

mRNA sequence

ATGGCTTCAATGTCTGCTCATGGGTCAACTCAATGGACTGCAATTGAAAACAAAGCCTTTGAGAAAGCTTTGGCAATTTATGACAAAGACACACCTGAGAGATGGCTCAATGTTGCAAAGGCCATTGGTGGAAAAACTGAAGAGGATGTCAAGAGGCATTATCAACTTCTTCTTGAGGATGTTAACCATATTGAGAATGGTCAAATTCCTTTTCCCTATCGAAACTCTACGAGGTCGAGTCGCTGA

Coding sequence (CDS)

ATGGCTTCAATGTCTGCTCATGGGTCAACTCAATGGACTGCAATTGAAAACAAAGCCTTTGAGAAAGCTTTGGCAATTTATGACAAAGACACACCTGAGAGATGGCTCAATGTTGCAAAGGCCATTGGTGGAAAAACTGAAGAGGATGTCAAGAGGCATTATCAACTTCTTCTTGAGGATGTTAACCATATTGAGAATGGTCAAATTCCTTTTCCCTATCGAAACTCTACGAGGTCGAGTCGCTGA

Protein sequence

MASMSAHGSTQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLEDVNHIENGQIPFPYRNSTRSSR
Homology
[Close]
BLAST of MELO3C012508.2 vs. NCBI nr
Match: XP_008447026.1 (PREDICTED: protein RADIALIS-like 1 [Cucumis melo])

HSP 1 Score: 168.7 bits (426), Expect = 8.1e-39
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0 

Query: 1  MASMSAHGSTQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLED 60
          MASMSAHGSTQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLED
Sbjct: 1  MASMSAHGSTQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLED 60

Query: 61 VNHIENGQIPFPYRNSTRSSR 82
          VNHIENGQIPFPYRNSTRSSR
Sbjct: 61 VNHIENGQIPFPYRNSTRSSR 81

[Close]
BLAST of MELO3C012508.2 vs. NCBI nr
Match: XP_011658943.1 (PREDICTED: protein RADIALIS-like 1 [Cucumis sativus] >KGN44073.1 hypothetical protein Csa_7G168060 [Cucumis sativus])

HSP 1 Score: 159.1 bits (401), Expect = 6.5e-36
Identity = 76/81 (93.83%), Postives = 79/81 (97.53%), Query Frame = 0 

Query: 1  MASMSAHGSTQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLED 60
          MASMSAHGS+ WTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEE+VKRHYQLLLED
Sbjct: 1  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VNHIENGQIPFPYRNSTRSSR 82
          VNHIE+GQIPFPYR STRSSR
Sbjct: 61 VNHIESGQIPFPYRKSTRSSR 81

[Close]
BLAST of MELO3C012508.2 vs. NCBI nr
Match: XP_008447025.1 (PREDICTED: protein RADIALIS-like 1 [Cucumis melo])

HSP 1 Score: 138.3 bits (347), Expect = 1.2e-29
Identity = 64/76 (84.21%), Postives = 71/76 (93.42%), Query Frame = 0 

Query: 1  MASMSAHGSTQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLED 60
          MASMSAHGS  WTA +NKAFEKALA+YDKDTP+RWLNVAKAIGGKTEE+VKRHYQLLLED
Sbjct: 1  MASMSAHGSGVWTAKQNKAFEKALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VNHIENGQIPFPYRNS 77
          V HIE+G++PFPYR S
Sbjct: 61 VKHIESGKVPFPYRTS 76

[Close]
BLAST of MELO3C012508.2 vs. NCBI nr
Match: XP_022952660.1 (protein RADIALIS-like 1 [Cucurbita moschata] >XP_022952661.1 protein RADIALIS-like 1 [Cucurbita moschata] >XP_023554744.1 protein RADIALIS-like 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 136.3 bits (342), Expect = 4.5e-29
Identity = 62/78 (79.49%), Postives = 74/78 (94.87%), Query Frame = 0 

Query: 1  MASMSAHGSTQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLED 60
          MASMSAHGS+ WTA ENKAFEKALA++D+DTPERW+NVAKAIGGKTE++VKRHYQLL++D
Sbjct: 1  MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDEVKRHYQLLVKD 60

Query: 61 VNHIENGQIPFPYRNSTR 79
          V HIE+G+I FPYR+STR
Sbjct: 61 VKHIESGEINFPYRSSTR 78

[Close]
BLAST of MELO3C012508.2 vs. NCBI nr
Match: XP_004151116.1 (PREDICTED: protein RADIALIS-like 1 [Cucumis sativus] >KGN44075.1 hypothetical protein Csa_7G169070 [Cucumis sativus])

HSP 1 Score: 136.0 bits (341), Expect = 5.8e-29
Identity = 62/76 (81.58%), Postives = 72/76 (94.74%), Query Frame = 0 

Query: 1  MASMSAHGSTQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLED 60
          MAS+SAHGS  WTA +NKAFE+ALA+YDKDTP+RWLNVAKAIGGKTEE+VKRHYQLLLED
Sbjct: 1  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VNHIENGQIPFPYRNS 77
          V HIE+G++PFPYR+S
Sbjct: 61 VKHIESGKVPFPYRSS 76

[Close]
BLAST of MELO3C012508.2 vs. TAIR10
Match: AT4G39250.1 (RAD-like 1)

HSP 1 Score: 110.2 bits (274), Expect = 6.2e-25
Identity = 50/76 (65.79%), Postives = 62/76 (81.58%), Query Frame = 0 

Query: 2  ASMSAHGSTQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLEDV 61
          +SMS+  S  WTA +NKAFE+ALA YD+DTP RW NVAK +GGKT E+VKRHY+LL++D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62 NHIENGQIPFP-YRNS 77
          N IENG +PFP YR S
Sbjct: 64 NSIENGHVPFPNYRTS 79

[Close]
BLAST of MELO3C012508.2 vs. TAIR10
Match: AT2G21650.1 (Homeodomain-like superfamily protein)

HSP 1 Score: 106.3 bits (264), Expect = 9.0e-24
Identity = 47/79 (59.49%), Postives = 63/79 (79.75%), Query Frame = 0 

Query: 3  SMSAHGSTQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLEDVN 62
          SMS++GS  WT  +NKAFE+ALA+YD+DTP+RW NVA+A+GGKT E+ KR Y LL+ D+ 
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63 HIENGQIPFP-YRNSTRSS 81
           IENG +PFP Y+ +T +S
Sbjct: 65 SIENGHVPFPDYKTTTGNS 83

[Close]
BLAST of MELO3C012508.2 vs. TAIR10
Match: AT1G75250.1 (RAD-like 6)

HSP 1 Score: 100.5 bits (249), Expect = 4.9e-22
Identity = 47/82 (57.32%), Postives = 62/82 (75.61%), Query Frame = 0 

Query: 1  MASMSAHGSTQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLED 60
          MAS S    + WT  +NK FE+ALA+YDKDTP+RW NVAKA+GGKT E+VKRHY +L+ED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VNHIENGQIPFP-YRNSTRSSR 82
          + +IE G++P P Y+    +SR
Sbjct: 61 LINIETGRVPLPNYKTFESNSR 82

[Close]
BLAST of MELO3C012508.2 vs. TAIR10
Match: AT1G19510.1 (RAD-like 5)

HSP 1 Score: 96.7 bits (239), Expect = 7.1e-21
Identity = 42/72 (58.33%), Postives = 56/72 (77.78%), Query Frame = 0 

Query: 1  MASMSAHGSTQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLED 60
          MAS S   S+ WT+ +NK FE+ALA+YDKDTP+RW NVAKA+G K+ E+VKRHY +L+ED
Sbjct: 1  MASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVED 60

Query: 61 VNHIENGQIPFP 73
          + +IE   +P P
Sbjct: 61 LMNIEQDLVPLP 72

[Close]
BLAST of MELO3C012508.2 vs. TAIR10
Match: AT2G18328.1 (RAD-like 4)

HSP 1 Score: 94.0 bits (232), Expect = 4.6e-20
Identity = 46/77 (59.74%), Postives = 61/77 (79.22%), Query Frame = 0 

Query: 1  MASMSAHGSTQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLED 60
          MAS S+  ++ WTA E+K FE ALA +DKDTP+RW  +A+A+GGK+ E+VKRHY+LLL D
Sbjct: 1  MAS-SSMSTSSWTAREDKQFEMALAKFDKDTPDRWQKIARAVGGKSTEEVKRHYELLLRD 60

Query: 61 VNHIENGQIPFP-YRNS 77
          VN IE+G+ P P YRN+
Sbjct: 61 VNDIESGRYPQPRYRNT 76

[Close]
BLAST of MELO3C012508.2 vs. Swiss-Prot
Match: sp|F4JVB8|RADL1_ARATH (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.1e-23
Identity = 50/76 (65.79%), Postives = 62/76 (81.58%), Query Frame = 0 

Query: 2  ASMSAHGSTQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLEDV 61
          +SMS+  S  WTA +NKAFE+ALA YD+DTP RW NVAK +GGKT E+VKRHY+LL++D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62 NHIENGQIPFP-YRNS 77
          N IENG +PFP YR S
Sbjct: 64 NSIENGHVPFPNYRTS 79

[Close]
BLAST of MELO3C012508.2 vs. Swiss-Prot
Match: sp|Q9SIJ5|RADL2_ARATH (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.6e-22
Identity = 47/79 (59.49%), Postives = 63/79 (79.75%), Query Frame = 0 

Query: 3  SMSAHGSTQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLEDVN 62
          SMS++GS  WT  +NKAFE+ALA+YD+DTP+RW NVA+A+GGKT E+ KR Y LL+ D+ 
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63 HIENGQIPFP-YRNSTRSS 81
           IENG +PFP Y+ +T +S
Sbjct: 65 SIENGHVPFPDYKTTTGNS 83

[Close]
BLAST of MELO3C012508.2 vs. Swiss-Prot
Match: sp|Q1A173|RADL6_ARATH (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 8.9e-21
Identity = 47/82 (57.32%), Postives = 62/82 (75.61%), Query Frame = 0 

Query: 1  MASMSAHGSTQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLED 60
          MAS S    + WT  +NK FE+ALA+YDKDTP+RW NVAKA+GGKT E+VKRHY +L+ED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VNHIENGQIPFP-YRNSTRSSR 82
          + +IE G++P P Y+    +SR
Sbjct: 61 LINIETGRVPLPNYKTFESNSR 82

[Close]
BLAST of MELO3C012508.2 vs. Swiss-Prot
Match: sp|Q58FS3|RAD_ANTMA (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 8.9e-21
Identity = 44/77 (57.14%), Postives = 62/77 (80.52%), Query Frame = 0 

Query: 1  MASMSAHGSTQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLED 60
          MAS    G   W+A ENKAFE+ALA+YDKDTP+RW NVA+A+ G+T E+VK+HY++L+ED
Sbjct: 1  MASTRGSG-RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVED 60

Query: 61 VNHIENGQIPFPYRNST 78
          + +IE+G++PFP   +T
Sbjct: 61 IKYIESGKVPFPNYRTT 76

[Close]
BLAST of MELO3C012508.2 vs. Swiss-Prot
Match: sp|Q6NNN0|RADL3_ARATH (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.0e-20
Identity = 46/77 (59.74%), Postives = 60/77 (77.92%), Query Frame = 0 

Query: 1  MASMSAHGSTQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLED 60
          MAS S   S  WT  ENK FE+ALA YD+DTP+RW NVA+A+GGK+ E+V+RHY+LL+ D
Sbjct: 1  MASNSMSSSASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELLIRD 60

Query: 61 VNHIENGQIPFP-YRNS 77
          VN IE+G+ P P YR++
Sbjct: 61 VNDIESGRYPHPNYRSN 77

[Close]
BLAST of MELO3C012508.2 vs. TrEMBL
Match: tr|A0A1S3BGF0|A0A1S3BGF0_CUCME (protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489577 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 5.4e-39
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0 

Query: 1  MASMSAHGSTQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLED 60
          MASMSAHGSTQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLED
Sbjct: 1  MASMSAHGSTQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLED 60

Query: 61 VNHIENGQIPFPYRNSTRSSR 82
          VNHIENGQIPFPYRNSTRSSR
Sbjct: 61 VNHIENGQIPFPYRNSTRSSR 81

[Close]
BLAST of MELO3C012508.2 vs. TrEMBL
Match: tr|A0A0A0K3K0|A0A0A0K3K0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G168060 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 4.3e-36
Identity = 76/81 (93.83%), Postives = 79/81 (97.53%), Query Frame = 0 

Query: 1  MASMSAHGSTQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLED 60
          MASMSAHGS+ WTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEE+VKRHYQLLLED
Sbjct: 1  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VNHIENGQIPFPYRNSTRSSR 82
          VNHIE+GQIPFPYR STRSSR
Sbjct: 61 VNHIESGQIPFPYRKSTRSSR 81

[Close]
BLAST of MELO3C012508.2 vs. TrEMBL
Match: tr|A0A1S3BGF6|A0A1S3BGF6_CUCME (protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489576 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 7.8e-30
Identity = 64/76 (84.21%), Postives = 71/76 (93.42%), Query Frame = 0 

Query: 1  MASMSAHGSTQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLED 60
          MASMSAHGS  WTA +NKAFEKALA+YDKDTP+RWLNVAKAIGGKTEE+VKRHYQLLLED
Sbjct: 1  MASMSAHGSGVWTAKQNKAFEKALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VNHIENGQIPFPYRNS 77
          V HIE+G++PFPYR S
Sbjct: 61 VKHIESGKVPFPYRTS 76

[Close]
BLAST of MELO3C012508.2 vs. TrEMBL
Match: tr|A0A0A0K344|A0A0A0K344_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G169070 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 3.9e-29
Identity = 62/76 (81.58%), Postives = 72/76 (94.74%), Query Frame = 0 

Query: 1  MASMSAHGSTQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLED 60
          MAS+SAHGS  WTA +NKAFE+ALA+YDKDTP+RWLNVAKAIGGKTEE+VKRHYQLLLED
Sbjct: 1  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VNHIENGQIPFPYRNS 77
          V HIE+G++PFPYR+S
Sbjct: 61 VKHIESGKVPFPYRSS 76

[Close]
BLAST of MELO3C012508.2 vs. TrEMBL
Match: tr|A0A0A0K348|A0A0A0K348_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G170600 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.1e-26
Identity = 57/76 (75.00%), Postives = 67/76 (88.16%), Query Frame = 0 

Query: 1  MASMSAHGSTQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLED 60
          MASMS+HGS  WT  +NKAFEKALA+YD+DTP+RWLNVAKA+GGKT E+VKRHY LL+ED
Sbjct: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VNHIENGQIPFPYRNS 77
          V  IE+GQ+PFPYR S
Sbjct: 61 VKFIESGQVPFPYRTS 76

The following BLAST results are available for this feature:
BLAST of MELO3C012508.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008447026.18.1e-39100.00PREDICTED: protein RADIALIS-like 1 [Cucumis melo][more]
XP_011658943.16.5e-3693.83PREDICTED: protein RADIALIS-like 1 [Cucumis sativus] >KGN44073.1 hypothetical pr... [more]
XP_008447025.11.2e-2984.21PREDICTED: protein RADIALIS-like 1 [Cucumis melo][more]
XP_022952660.14.5e-2979.49protein RADIALIS-like 1 [Cucurbita moschata] >XP_022952661.1 protein RADIALIS-li... [more]
XP_004151116.15.8e-2981.58PREDICTED: protein RADIALIS-like 1 [Cucumis sativus] >KGN44075.1 hypothetical pr... [more]
BLAST of MELO3C012508.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G39250.16.2e-2565.79RAD-like 1[more]
AT2G21650.19.0e-2459.49Homeodomain-like superfamily protein[more]
AT1G75250.14.9e-2257.32RAD-like 6[more]
AT1G19510.17.1e-2158.33RAD-like 5[more]
AT2G18328.14.6e-2059.74RAD-like 4[more]
BLAST of MELO3C012508.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|F4JVB8|RADL1_ARATH1.1e-2365.79Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1[more]
sp|Q9SIJ5|RADL2_ARATH1.6e-2259.49Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1[more]
sp|Q1A173|RADL6_ARATH8.9e-2157.32Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1[more]
sp|Q58FS3|RAD_ANTMA8.9e-2157.14Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1[more]
sp|Q6NNN0|RADL3_ARATH2.0e-2059.74Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1[more]
BLAST of MELO3C012508.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BGF0|A0A1S3BGF0_CUCME5.4e-39100.00protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489577 PE=4 SV=1[more]
tr|A0A0A0K3K0|A0A0A0K3K0_CUCSA4.3e-3693.83Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G168060 PE=4 SV=1[more]
tr|A0A1S3BGF6|A0A1S3BGF6_CUCME7.8e-3084.21protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489576 PE=4 SV=1[more]
tr|A0A0A0K344|A0A0A0K344_CUCSA3.9e-2981.58Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G169070 PE=4 SV=1[more]
tr|A0A0A0K348|A0A0A0K348_CUCSA1.1e-2675.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G170600 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR009057Homeobox-like_sf
IPR017884SANT_dom
IPR001005SANT/Myb
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C012508.2.1MELO3C012508.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainSMARTSM00717santcoord: 8..60
e-value: 1.2E-8
score: 44.7
IPR001005SANT/Myb domainPFAMPF00249Myb_DNA-bindingcoord: 11..57
e-value: 1.7E-7
score: 31.2
IPR001005SANT/Myb domainCDDcd00167SANTcoord: 12..58
e-value: 6.39792E-8
score: 43.333
NoneNo IPR availableGENE3DG3DSA:1.10.10.60coord: 4..71
e-value: 3.5E-21
score: 76.8
NoneNo IPR availablePANTHERPTHR43952:SF14PROTEIN RADIALIS-LIKE 1-RELATEDcoord: 1..80
NoneNo IPR availablePANTHERPTHR43952FAMILY NOT NAMEDcoord: 1..80
IPR017884SANT domainPROSITEPS51293SANTcoord: 7..62
score: 10.852
IPR009057Homeobox-like domain superfamilySUPERFAMILYSSF46689Homeodomain-likecoord: 10..66

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C012508.2Cla015917Watermelon (97103) v1medwmB231
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C012508.2Wax gourdmedwgoB223
MELO3C012508.2Wax gourdmedwgoB232
MELO3C012508.2Cucumber (Gy14) v2cgybmedB083
MELO3C012508.2Cucumber (Gy14) v2cgybmedB468
MELO3C012508.2Cucumber (Gy14) v1cgymedB406
MELO3C012508.2Cucumber (Gy14) v1cgymedB150
MELO3C012508.2Cucurbita maxima (Rimu)cmamedB101
MELO3C012508.2Cucurbita maxima (Rimu)cmamedB538
MELO3C012508.2Cucurbita maxima (Rimu)cmamedB588
MELO3C012508.2Cucurbita maxima (Rimu)cmamedB643
MELO3C012508.2Cucurbita moschata (Rifu)cmomedB092
MELO3C012508.2Cucurbita moschata (Rifu)cmomedB522
MELO3C012508.2Cucurbita moschata (Rifu)cmomedB579
MELO3C012508.2Cucurbita moschata (Rifu)cmomedB631
MELO3C012508.2Cucurbita pepo (Zucchini)cpemedB262
MELO3C012508.2Cucurbita pepo (Zucchini)cpemedB319
MELO3C012508.2Cucurbita pepo (Zucchini)cpemedB716
MELO3C012508.2Cucurbita pepo (Zucchini)cpemedB816
MELO3C012508.2Wild cucumber (PI 183967)cpimedB096
MELO3C012508.2Wild cucumber (PI 183967)cpimedB526
MELO3C012508.2Cucumber (Chinese Long) v2cumedB096
MELO3C012508.2Melon (DHL92) v3.6.1medmedB041
MELO3C012508.2Bottle gourd (USVL1VR-Ls)lsimedB068
MELO3C012508.2Bottle gourd (USVL1VR-Ls)lsimedB102
MELO3C012508.2Watermelon (Charleston Gray)medwcgB186
MELO3C012508.2Watermelon (Charleston Gray)medwcgB191
MELO3C012508.2Watermelon (97103) v1medwmB244
MELO3C012508.2Silver-seed gourdcarmedB0184
MELO3C012508.2Silver-seed gourdcarmedB0330
MELO3C012508.2Silver-seed gourdcarmedB0888
MELO3C012508.2Cucumber (Chinese Long) v3cucmedB099
MELO3C012508.2Cucumber (Chinese Long) v3cucmedB539
MELO3C012508.2Watermelon (97103) v2medwmbB162
MELO3C012508.2Watermelon (97103) v2medwmbB165