MELO3C011943 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C011943
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionTyrosine--tRNA ligase
Locationchr10 : 3767301 .. 3768101 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTCCACAAAAAGGCTTCTAACTTTATTTTGCCTTTTCTAAGTCTTGGATATTCTTGAACTGAATAACTTTTACCCCAGCTTTTTAAGTGATGTCTCTTTCATTTCCCAGCTAAAATAAAAACCTTATTGTGACCCCTTCTTTCAACAGAGGAGAAGGTATTGGATTCAAACCTCATCCTCTTGGAATAAAATTGTTCTTTATATGACAGTTTGGAGGCATTCAAATACCACATTCACGAAAAGGAAACCATCACATTTGCTTCACTAGCGGATTAGAAATGTCTTCTAGAAATTCTCAGCTCAAGTTCAACGTTGATCGTGGAACTCCTTCCTCAGACGACTATGGTGGATACATTTCTGACTCTGTGCTCGAGACTCGAAAGCACCACAAAAACCAAAAACCTCATGTAACGTTCAGTGACAACAACAACAACGAGGTACCTGATGTTCACAAGACTTCTAAACACCGCCATGCTCATTTCTACACCAATGATATCAATGATGAGGCCGAAGAGTTCATTAGGCTGAAGCACAACCAGATGTCTATTGACCTCTAAATTCTAATGGAAAGAAACTGTTCCAATTGGTGAAGTTAGCGCTTAATTATATGACCCAATAATGTTCTGATGCTACAGAGCTCCTTGCAATTGTTAAAATATTTATATTTCCTATGTGAACATTTCAAAGTTCCAGGAATAATACAGACTGTTTATATTAGTCTTTTTATGGCACTGAGAACTATGAGAATTATAAAAATAATTAAACTATGGACTTCATATAACATTATGTTATTATTTCTT

mRNA sequence

ATTCCACAAAAAGGCTTCTAACTTTATTTTGCCTTTTCTAAGTCTTGGATATTCTTGAACTGAATAACTTTTACCCCAGCTTTTTAAGTGATGTCTCTTTCATTTCCCAGCTAAAATAAAAACCTTATTGTGACCCCTTCTTTCAACAGAGGAGAAGGTATTGGATTCAAACCTCATCCTCTTGGAATAAAATTGTTCTTTATATGACAGTTTGGAGGCATTCAAATACCACATTCACGAAAAGGAAACCATCACATTTGCTTCACTAGCGGATTAGAAATGTCTTCTAGAAATTCTCAGCTCAAGTTCAACGTTGATCGTGGAACTCCTTCCTCAGACGACTATGGTGGATACATTTCTGACTCTGTGCTCGAGACTCGAAAGCACCACAAAAACCAAAAACCTCATGTAACGTTCAGTGACAACAACAACAACGAGGTACCTGATGTTCACAAGACTTCTAAACACCGCCATGCTCATTTCTACACCAATGATATCAATGATGAGGCCGAAGAGTTCATTAGGCTGAAGCACAACCAGATGTCTATTGACCTCTAAATTCTAATGGAAAGAAACTGTTCCAATTGGTGAAGTTAGCGCTTAATTATATGACCCAATAATGTTCTGATGCTACAGAGCTCCTTGCAATTGTTAAAATATTTATATTTCCTATGTGAACATTTCAAAGTTCCAGGAATAATACAGACTGTTTATATTAGTCTTTTTATGGCACTGAGAACTATGAGAATTATAAAAATAATTAAACTATGGACTTCATATAACATTATGTTATTATTTCTT

Coding sequence (CDS)

ATGTCTTCTAGAAATTCTCAGCTCAAGTTCAACGTTGATCGTGGAACTCCTTCCTCAGACGACTATGGTGGATACATTTCTGACTCTGTGCTCGAGACTCGAAAGCACCACAAAAACCAAAAACCTCATGTAACGTTCAGTGACAACAACAACAACGAGGTACCTGATGTTCACAAGACTTCTAAACACCGCCATGCTCATTTCTACACCAATGATATCAATGATGAGGCCGAAGAGTTCATTAGGCTGAAGCACAACCAGATGTCTATTGACCTCTAA

Protein sequence

MSSRNSQLKFNVDRGTPSSDDYGGYISDSVLETRKHHKNQKPHVTFSDNNNNEVPDVHKTSKHRHAHFYTNDINDEAEEFIRLKHNQMSIDL*
Homology
[Close]
BLAST of MELO3C011943 vs. TrEMBL
Match: A0A0A0KQ47_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G598070 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 2.7e-36
Identity = 78/91 (85.71%), Postives = 82/91 (90.11%), Query Frame = 1 

Query: 1  MSSRNSQLKFNVDRGTPSSDDYGGYISDSVLETRKHHKNQKPHVTFSDNNNNEVPDVHKT 60
          MS RNS+LKFNVD GT SSDDYGGYISDSVLETRK+HKNQKPHVTFS   NN+V DVHKT
Sbjct: 1  MSFRNSKLKFNVDHGTHSSDDYGGYISDSVLETRKYHKNQKPHVTFS-YGNNKVSDVHKT 60

Query: 61 SKHRHAHFYTNDINDEAEEFIRLKHNQMSID 92
          SKH HAHFYT+DINDEAEEFIRLK NQMSID
Sbjct: 61 SKHHHAHFYTDDINDEAEEFIRLKQNQMSID 90

[Close]
BLAST of MELO3C011943 vs. NCBI nr
Match: gi|700196571|gb|KGN51748.1| (hypothetical protein Csa_5G598070 [Cucumis sativus])

HSP 1 Score: 159.1 bits (401), Expect = 3.8e-36
Identity = 78/91 (85.71%), Postives = 82/91 (90.11%), Query Frame = 1 

Query: 1  MSSRNSQLKFNVDRGTPSSDDYGGYISDSVLETRKHHKNQKPHVTFSDNNNNEVPDVHKT 60
          MS RNS+LKFNVD GT SSDDYGGYISDSVLETRK+HKNQKPHVTFS   NN+V DVHKT
Sbjct: 1  MSFRNSKLKFNVDHGTHSSDDYGGYISDSVLETRKYHKNQKPHVTFS-YGNNKVSDVHKT 60

Query: 61 SKHRHAHFYTNDINDEAEEFIRLKHNQMSID 92
          SKH HAHFYT+DINDEAEEFIRLK NQMSID
Sbjct: 61 SKHHHAHFYTDDINDEAEEFIRLKQNQMSID 90

The following BLAST results are available for this feature:
BLAST of MELO3C011943 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KQ47_CUCSA2.7e-3685.71Uncharacterized protein OS=Cucumis sativus GN=Csa_5G598070 PE=4 SV=1[more]
BLAST of MELO3C011943 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700196571|gb|KGN51748.1|3.8e-3685.71hypothetical protein Csa_5G598070 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C011943T1MELO3C011943T1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C011943Csa5G598070Cucumber (Chinese Long) v2cumeB377
MELO3C011943Cla010038Watermelon (97103) v1mewmB061
MELO3C011943ClCG05G025810Watermelon (Charleston Gray)mewcgB062
MELO3C011943Bhi07G001440Wax gourdmewgoB072
MELO3C011943CSPI05G22200Wild cucumber (PI 183967)cpimeB369
MELO3C011943Lsi04G005980Bottle gourd (USVL1VR-Ls)lsimeB281
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C011943Silver-seed gourdcarmeB0246
MELO3C011943Silver-seed gourdcarmeB0505
MELO3C011943Silver-seed gourdcarmeB0623
MELO3C011943Silver-seed gourdcarmeB0716
MELO3C011943Cucumber (Chinese Long) v3cucmeB096
MELO3C011943Cucumber (Chinese Long) v3cucmeB381
MELO3C011943Watermelon (97103) v2mewmbB060
MELO3C011943Watermelon (97103) v2mewmbB072
MELO3C011943Wax gourdmewgoB061
MELO3C011943Melon (DHL92) v3.5.1memeB029
MELO3C011943Cucumber (Gy14) v1cgymeB474
MELO3C011943Cucumber (Gy14) v1cgymeB643
MELO3C011943Cucurbita maxima (Rimu)cmameB147
MELO3C011943Cucurbita maxima (Rimu)cmameB354
MELO3C011943Cucurbita maxima (Rimu)cmameB641
MELO3C011943Cucurbita maxima (Rimu)cmameB717
MELO3C011943Cucurbita moschata (Rifu)cmomeB347
MELO3C011943Cucurbita moschata (Rifu)cmomeB632
MELO3C011943Cucurbita moschata (Rifu)cmomeB707
MELO3C011943Wild cucumber (PI 183967)cpimeB089
MELO3C011943Cucumber (Chinese Long) v2cumeB091
MELO3C011943Watermelon (Charleston Gray)mewcgB073
MELO3C011943Watermelon (97103) v1mewmB048
MELO3C011943Cucurbita pepo (Zucchini)cpemeB021
MELO3C011943Cucurbita pepo (Zucchini)cpemeB079
MELO3C011943Cucurbita pepo (Zucchini)cpemeB364
MELO3C011943Bottle gourd (USVL1VR-Ls)lsimeB462
MELO3C011943Cucumber (Gy14) v2cgybmeB077
MELO3C011943Cucumber (Gy14) v2cgybmeB319