Csa5G598070 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa5G598070
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr5 : 21672491 .. 21672913 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCTTCTCTAGCCGATTAGAAATGTCTTTTAGAAATTCTAAGCTCAAGTTCAACGTTGATCATGGAACTCATTCCTCAGATGACTATGGTGGCTACATTTCTGACTCTGTGCTCGAGACTCGAAAGTACCACAAAAACCAAAAACCTCACGTAACATTCAGCTACGGCAATAACAAGGTATCTGATGTTCACAAGACTTCTAAACACCACCATGCTCATTTCTACACGGATGATATCAATGATGAGGCCGAAGAGTTCATTAGGCTGAAGCAAAACCAGATGTCTATTGACTTCTAAATTCTAATAGAAACAAACTGTTCCAATTGGTGATATTCACAAGACCCAATAATGCTCTGATGCTACAGAGCTCCTTGCAATTGTTAAAATATTTATAGTTCCTATGTGAACATTTCAAAGTTCCAGC

mRNA sequence

ATGTCTTTTAGAAATTCTAAGCTCAAGTTCAACGTTGATCATGGAACTCATTCCTCAGATGACTATGGTGGCTACATTTCTGACTCTGTGCTCGAGACTCGAAAGTACCACAAAAACCAAAAACCTCACGTAACATTCAGCTACGGCAATAACAAGGTATCTGATGTTCACAAGACTTCTAAACACCACCATGCTCATTTCTACACGGATGATATCAATGATGAGGCCGAAGAGTTCATTAGGCTGAAGCAAAACCAGATGTCTATTGACTTCTAA

Coding sequence (CDS)

ATGTCTTTTAGAAATTCTAAGCTCAAGTTCAACGTTGATCATGGAACTCATTCCTCAGATGACTATGGTGGCTACATTTCTGACTCTGTGCTCGAGACTCGAAAGTACCACAAAAACCAAAAACCTCACGTAACATTCAGCTACGGCAATAACAAGGTATCTGATGTTCACAAGACTTCTAAACACCACCATGCTCATTTCTACACGGATGATATCAATGATGAGGCCGAAGAGTTCATTAGGCTGAAGCAAAACCAGATGTCTATTGACTTCTAA

Protein sequence

MSFRNSKLKFNVDHGTHSSDDYGGYISDSVLETRKYHKNQKPHVTFSYGNNKVSDVHKTSKHHHAHFYTDDINDEAEEFIRLKQNQMSIDF*
Homology
[Close]
BLAST of Csa5G598070 vs. TrEMBL
Match: A0A0A0KQ47_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G598070 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 2.5e-47
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1 

Query: 1  MSFRNSKLKFNVDHGTHSSDDYGGYISDSVLETRKYHKNQKPHVTFSYGNNKVSDVHKTS 60
          MSFRNSKLKFNVDHGTHSSDDYGGYISDSVLETRKYHKNQKPHVTFSYGNNKVSDVHKTS
Sbjct: 1  MSFRNSKLKFNVDHGTHSSDDYGGYISDSVLETRKYHKNQKPHVTFSYGNNKVSDVHKTS 60

Query: 61 KHHHAHFYTDDINDEAEEFIRLKQNQMSIDF 92
          KHHHAHFYTDDINDEAEEFIRLKQNQMSIDF
Sbjct: 61 KHHHAHFYTDDINDEAEEFIRLKQNQMSIDF 91

[Close]
BLAST of Csa5G598070 vs. NCBI nr
Match: gi|700196571|gb|KGN51748.1| (hypothetical protein Csa_5G598070 [Cucumis sativus])

HSP 1 Score: 195.7 bits (496), Expect = 3.6e-47
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1 

Query: 1  MSFRNSKLKFNVDHGTHSSDDYGGYISDSVLETRKYHKNQKPHVTFSYGNNKVSDVHKTS 60
          MSFRNSKLKFNVDHGTHSSDDYGGYISDSVLETRKYHKNQKPHVTFSYGNNKVSDVHKTS
Sbjct: 1  MSFRNSKLKFNVDHGTHSSDDYGGYISDSVLETRKYHKNQKPHVTFSYGNNKVSDVHKTS 60

Query: 61 KHHHAHFYTDDINDEAEEFIRLKQNQMSIDF 92
          KHHHAHFYTDDINDEAEEFIRLKQNQMSIDF
Sbjct: 61 KHHHAHFYTDDINDEAEEFIRLKQNQMSIDF 91

The following BLAST results are available for this feature:
BLAST of Csa5G598070 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KQ47_CUCSA2.5e-47100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G598070 PE=4 SV=1[more]
BLAST of Csa5G598070 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700196571|gb|KGN51748.1|3.6e-47100.00hypothetical protein Csa_5G598070 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa5G598070.1Csa5G598070.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa5G598070Cla010038Watermelon (97103) v1cuwmB401
Csa5G598070MELO3C011943Melon (DHL92) v3.5.1cumeB377
Csa5G598070ClCG05G025810Watermelon (Charleston Gray)cuwcgB394
Csa5G598070Lsi04G005980Bottle gourd (USVL1VR-Ls)culsiB368
Csa5G598070MELO3C011943.2Melon (DHL92) v3.6.1cumedB359
Csa5G598070Bhi07G001440Wax gourdcuwgoB512
Csa5G598070CSPI05G22200Wild cucumber (PI 183967)cpicuB239
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa5G598070Watermelon (97103) v2cuwmbB383
Csa5G598070Watermelon (97103) v2cuwmbB400
Csa5G598070Wax gourdcuwgoB490
Csa5G598070Cucumber (Chinese Long) v2cucuB064
Csa5G598070Cucumber (Gy14) v1cgycuB410
Csa5G598070Cucumber (Gy14) v1cgycuB551
Csa5G598070Cucurbita maxima (Rimu)cmacuB413
Csa5G598070Cucurbita maxima (Rimu)cmacuB749
Csa5G598070Cucurbita maxima (Rimu)cmacuB803
Csa5G598070Cucurbita moschata (Rifu)cmocuB402
Csa5G598070Cucurbita moschata (Rifu)cmocuB739
Csa5G598070Cucurbita moschata (Rifu)cmocuB793
Csa5G598070Melon (DHL92) v3.5.1cumeB386
Csa5G598070Melon (DHL92) v3.5.1cumeB393
Csa5G598070Watermelon (Charleston Gray)cuwcgB411
Csa5G598070Watermelon (97103) v1cuwmB376
Csa5G598070Cucurbita pepo (Zucchini)cpecuB047
Csa5G598070Cucurbita pepo (Zucchini)cpecuB118
Csa5G598070Cucurbita pepo (Zucchini)cpecuB440
Csa5G598070Bottle gourd (USVL1VR-Ls)culsiB388
Csa5G598070Cucumber (Gy14) v2cgybcuB076
Csa5G598070Cucumber (Gy14) v2cgybcuB223
Csa5G598070Melon (DHL92) v3.6.1cumedB376
Csa5G598070Silver-seed gourdcarcuB0271
Csa5G598070Silver-seed gourdcarcuB0530
Csa5G598070Silver-seed gourdcarcuB0648
Csa5G598070Silver-seed gourdcarcuB0743