MELO3C010939 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C010939
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B
Location	chr3 : 27647916 .. 27648703 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTAGAGCCATAATAGAAATCTGCAGCAGTGGATTGGCTACAAGGATTTGACGTTTTTGTTTTCTTCTTCTTCTTCTTCTTCTACTACTTTTCTCCTAATTTTCCCCCTTCTTCCCCTTTCCTCCAAACTCCGCCGATGGATTTCGCTTCGATTTTCTATTGAACAAACCTTCCGATTCTGTGGGTTTTCATTTGGGTCTCTTAATTTCACTCCCGTTTCCTCGTTTGTTTGATGGGTAAGAAAAAAACCCAGAAAACTAAGGAGATTGCAGTCGCCATAGCTGAAACCTCCACCTCCAAATTAGCCGATGATGGTATCGGCCAATCCATACAGCCCAGAAAAAGAGGCCGGCCGCGTAAGGTTCTTGATGAACAACAAAACGAACAGGAGAACAAGAAACTGCCGCCGCCGCCGCCGCTGCTGCCGGAAGTTGAAGAGAATCCACCTGAGAAAAAAATTAAAGCGACTGTGGATGAACCGCCGCCGGGTTCCGTGAAAGAAGGTTCGAAACAAGAAGAACCCAAAACAGGGGATGGTTCGAGAAGCAGAGGAAGGCGAAAGAACAAACCCAGAAAAAGTAGCTAATGGGTAAACATAAAACGAAAATCAAAAATCAAAAAACAATTTTATGGGTTCTTCTTCTTTCTTTCTTTCTTTTTTTTTTTGGGGGGGGGGGGAATTTAGGAATCTGAAAAACCTGAAGAAAAATCCTTGGGTTTCGTTTCTTTGATTTTTGTGGGTAAATTGTATTGTTGTTGTATTTGATTGGATTAGGTTGAAAGAATTC

mRNA sequence

AGTAGAGCCATAATAGAAATCTGCAGCAGTGGATTGGCTACAAGGATTTGACGTTTTTGTTTTCTTCTTCTTCTTCTTCTTCTACTACTTTTCTCCTAATTTTCCCCCTTCTTCCCCTTTCCTCCAAACTCCGCCGATGGATTTCGCTTCGATTTTCTATTGAACAAACCTTCCGATTCTGTGGGTTTTCATTTGGGTCTCTTAATTTCACTCCCGTTTCCTCGTTTGTTTGATGGGTAAGAAAAAAACCCAGAAAACTAAGGAGATTGCAGTCGCCATAGCTGAAACCTCCACCTCCAAATTAGCCGATGATGGTATCGGCCAATCCATACAGCCCAGAAAAAGAGGCCGGCCGCGTAAGGTTCTTGATGAACAACAAAACGAACAGGAGAACAAGAAACTGCCGCCGCCGCCGCCGCTGCTGCCGGAAGTTGAAGAGAATCCACCTGAGAAAAAAATTAAAGCGACTGTGGATGAACCGCCGCCGGGTTCCGTGAAAGAAGGTTCGAAACAAGAAGAACCCAAAACAGGGGATGGTTCGAGAAGCAGAGGAAGGCGAAAGAACAAACCCAGAAAAAGTAGCTAATGGGTAAACATAAAACGAAAATCAAAAATCAAAAAACAATTTTATGGGTTCTTCTTCTTTCTTTCTTTCTTTTTTTTTTTGGGGGGGGGGGGAATTTAGGAATCTGAAAAACCTGAAGAAAAATCCTTGGGTTTCGTTTCTTTGATTTTTGTGGGTAAATTGTATTGTTGTTGTATTTGATTGGATTAGGTTGAAAGAATTC

Coding sequence (CDS)

ATGGGTAAGAAAAAAACCCAGAAAACTAAGGAGATTGCAGTCGCCATAGCTGAAACCTCCACCTCCAAATTAGCCGATGATGGTATCGGCCAATCCATACAGCCCAGAAAAAGAGGCCGGCCGCGTAAGGTTCTTGATGAACAACAAAACGAACAGGAGAACAAGAAACTGCCGCCGCCGCCGCCGCTGCTGCCGGAAGTTGAAGAGAATCCACCTGAGAAAAAAATTAAAGCGACTGTGGATGAACCGCCGCCGGGTTCCGTGAAAGAAGGTTCGAAACAAGAAGAACCCAAAACAGGGGATGGTTCGAGAAGCAGAGGAAGGCGAAAGAACAAACCCAGAAAAAGTAGCTAA

Protein sequence

MGKKKTQKTKEIAVAIAETSTSKLADDGIGQSIQPRKRGRPRKVLDEQQNEQENKKLPPPPPLLPEVEENPPEKKIKATVDEPPPGSVKEGSKQEEPKTGDGSRSRGRRKNKPRKSS*

Homology

[Close]

BLAST of MELO3C010939 vs. TrEMBL
Match: A0A0A0LRH2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G361610 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 6.1e-46
Identity = 103/118 (87.29%), Postives = 107/118 (90.68%), Query Frame = 1


Query: 1   MGKKKTQKTKEIAVAIAETSTSKLADDGI-GQSIQPRKRGRPRKVLDEQQNEQENKKLPP 60
           MGKKKTQKTKEIAVAIAETSTSKLADDGI GQ IQPRKRGRPRKVL+EQQNEQE+KK  P
Sbjct: 1   MGKKKTQKTKEIAVAIAETSTSKLADDGIIGQPIQPRKRGRPRKVLEEQQNEQESKK--P 60

Query: 61  PPPLLPEVEENPPEKKIKATVDEPPPGSVKEGSKQEEPKTGDGSRSRGRRKNKPRKSS 118
           PPPLL EV ENPPEKKIK TVDE   GS+ EGSK+EEPKTGDGSRSRGRRKNKPRKSS
Sbjct: 61  PPPLL-EVAENPPEKKIKGTVDEAALGSMIEGSKEEEPKTGDGSRSRGRRKNKPRKSS 115

[Close]

BLAST of MELO3C010939 vs. TrEMBL
Match: A0A151TC30_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_019184 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.8e-13
Identity = 62/126 (49.21%), Postives = 71/126 (56.35%), Query Frame = 1


Query: 1   MGKKKTQKTKEIAVAIAETSTSKLADDGIGQSIQPRKRGRPRKVLDEQQNEQENKKLPPP 60
           MGKKK QKTKE+ VAIAE S SK  D    Q   PRKRGRPRKV+   + E E KK+ P 
Sbjct: 1   MGKKKRQKTKELWVAIAEAS-SKGGDTEQPQPQPPRKRGRPRKVV-VVETESEAKKVEPQ 60

Query: 61  PPLLPEVEENPPEKKIKATVDEPPPG--------SVKEGSKQE-EPKTGDGSRSRGRRKN 118
           P     +EE  PE    AT  E   G          KEG  QE +   G+ SRSR RRK+
Sbjct: 61  P-----IEEPQPEASTTATKKEEEHGKHQEELTSESKEGVFQEIQLPKGEPSRSRARRKS 119

[Close]

BLAST of MELO3C010939 vs. TrEMBL
Match: A0A059BQT5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F01898 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.5e-12
Identity = 52/131 (39.69%), Postives = 74/131 (56.49%), Query Frame = 1


Query: 1   MGKKKTQKTKEIAVAIAETSTS--KLADDGIGQSIQPRKRGRPRKVL---------DEQQ 60
           MGK+K QKTKE++VAIAE S+S  +  D+    ++ PRKRGRPRK++         +EQQ
Sbjct: 2   MGKRKAQKTKELSVAIAEASSSAAEAGDETKSPAVTPRKRGRPRKIVEAKAEAKQEEEQQ 61

Query: 61  NEQENKKLPPPPPLLPEVEENPPEKKIKATVDEPPPGSVKEGSK---QEEPKTGDGSRSR 118
            +Q+ ++    P  + + E    E K+     +   G V+E  +   QE       SRSR
Sbjct: 62  QQQQQQQQQQNP--IQQAEAVEEEAKVVDQTKKARTGEVEEQKQEMLQESSTKKTSSRSR 121

[Close]

BLAST of MELO3C010939 vs. TrEMBL
Match: B9R7T8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1594200 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.7e-11
Identity = 55/131 (41.98%), Postives = 75/131 (57.25%), Query Frame = 1


Query: 1   MGKKKTQKTKEIAVAIAETSTSKLADDGIGQSIQPRKRGRPRKVLD--EQQNEQENKKLP 60
           MGKKK QKTKE++VAIAE S+++       QS  PRKRGRPRK+++  E +N++E +   
Sbjct: 1   MGKKKPQKTKELSVAIAEASSTQ------PQSQTPRKRGRPRKIIEKMESENKKEEEATG 60

Query: 61  PPPPLLPEVEENPPEKKIKATVDEP------------PPGSVKEGSKQEEPKTGDGSRSR 118
              P + EV EN   KK K+++ E             P  S   G K+EE +  +  R  
Sbjct: 61  GAHP-VEEVVEN-QLKKAKSSIKEEEKQQQAEGEGEGPSASTSRGKKKEEAR--EPPRRS 120

[Close]

BLAST of MELO3C010939 vs. TrEMBL
Match: A0A067L321_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04424 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 8.4e-11
Identity = 53/123 (43.09%), Postives = 70/123 (56.91%), Query Frame = 1


Query: 4   KKTQKTKEIAVAIAETSTSKLADDGIGQSIQPRKRGRPRKVLDEQQNEQENKKLPPPPPL 63
           KK QKTKEI+VAIAE S++   D+   Q+  PRKRGRPRK + E+    E+KK  P    
Sbjct: 3   KKPQKTKEISVAIAEASST--GDETQQQAQAPRKRGRPRKTITEKIETHEDKKEEPQ--- 62

Query: 64  LPEVEENPPEKKIKATVDEP-------PPGSVKEGSKQEEPKTGDGS--RSRGRRKNKPR 118
             +V EN  +K   +  +E        PP S + G K+EE K+ +    R   RRK+KPR
Sbjct: 63  -QQVNENQSKKAKSSFTEEEKQVEVEGPPASTR-GKKKEEEKSEETEPPRRSRRRKSKPR 118

[Close]

BLAST of MELO3C010939 vs. NCBI nr
Match: gi|700207477|gb|KGN62596.1| (hypothetical protein Csa_2G361610 [Cucumis sativus])

HSP 1 Score: 191.4 bits (485), Expect = 8.8e-46
Identity = 103/118 (87.29%), Postives = 107/118 (90.68%), Query Frame = 1


Query: 1   MGKKKTQKTKEIAVAIAETSTSKLADDGI-GQSIQPRKRGRPRKVLDEQQNEQENKKLPP 60
           MGKKKTQKTKEIAVAIAETSTSKLADDGI GQ IQPRKRGRPRKVL+EQQNEQE+KK  P
Sbjct: 1   MGKKKTQKTKEIAVAIAETSTSKLADDGIIGQPIQPRKRGRPRKVLEEQQNEQESKK--P 60

Query: 61  PPPLLPEVEENPPEKKIKATVDEPPPGSVKEGSKQEEPKTGDGSRSRGRRKNKPRKSS 118
           PPPLL EV ENPPEKKIK TVDE   GS+ EGSK+EEPKTGDGSRSRGRRKNKPRKSS
Sbjct: 61  PPPLL-EVAENPPEKKIKGTVDEAALGSMIEGSKEEEPKTGDGSRSRGRRKNKPRKSS 115

[Close]

BLAST of MELO3C010939 vs. NCBI nr
Match: gi|645228026|ref|XP_008220798.1| (PREDICTED: zinc finger and BTB domain-containing protein 47 [Prunus mume])

HSP 1 Score: 84.7 bits (208), Expect = 1.2e-13
Identity = 58/139 (41.73%), Postives = 76/139 (54.68%), Query Frame = 1


Query: 1   MGKKKTQKTKEIAVAIAETSTSKLADDGIGQSIQ----PRKRGRPRKVLDEQQNEQENKK 60
           MGKKK QKTKE++VAIAE  ++   D+G  QS      PRKRGRPRK++++ ++ +E   
Sbjct: 1   MGKKKPQKTKELSVAIAEAPST--GDEGQQQSQPQPHTPRKRGRPRKIIEKTESTEEQST 60

Query: 61  LPPPPPLLPEVEENPPE--KKIKATVD----------------EPPPGSVKEGSKQEEPK 118
                       E+  E  KK KAT D                EP   SV+ G+K+EE +
Sbjct: 61  PQTEEAAAAAAAEDVEEQSKKAKATEDEDQQEEEQEQPKIKEEEPSSASVRGGAKKEEGQ 120

[Close]

BLAST of MELO3C010939 vs. NCBI nr
Match: gi|1012353395|gb|KYP64583.1| (hypothetical protein KK1_019184 [Cajanus cajan])

HSP 1 Score: 83.6 bits (205), Expect = 2.6e-13
Identity = 62/126 (49.21%), Postives = 71/126 (56.35%), Query Frame = 1


Query: 1   MGKKKTQKTKEIAVAIAETSTSKLADDGIGQSIQPRKRGRPRKVLDEQQNEQENKKLPPP 60
           MGKKK QKTKE+ VAIAE S SK  D    Q   PRKRGRPRKV+   + E E KK+ P 
Sbjct: 1   MGKKKRQKTKELWVAIAEAS-SKGGDTEQPQPQPPRKRGRPRKVV-VVETESEAKKVEPQ 60

Query: 61  PPLLPEVEENPPEKKIKATVDEPPPG--------SVKEGSKQE-EPKTGDGSRSRGRRKN 118
           P     +EE  PE    AT  E   G          KEG  QE +   G+ SRSR RRK+
Sbjct: 61  P-----IEEPQPEASTTATKKEEEHGKHQEELTSESKEGVFQEIQLPKGEPSRSRARRKS 119

[Close]

BLAST of MELO3C010939 vs. NCBI nr
Match: gi|702369304|ref|XP_010061321.1| (PREDICTED: ataxin-8-like [Eucalyptus grandis])

HSP 1 Score: 80.5 bits (197), Expect = 2.2e-12
Identity = 52/131 (39.69%), Postives = 74/131 (56.49%), Query Frame = 1


Query: 1   MGKKKTQKTKEIAVAIAETSTS--KLADDGIGQSIQPRKRGRPRKVL---------DEQQ 60
           MGK+K QKTKE++VAIAE S+S  +  D+    ++ PRKRGRPRK++         +EQQ
Sbjct: 2   MGKRKAQKTKELSVAIAEASSSAAEAGDETKSPAVTPRKRGRPRKIVEAKAEAKQEEEQQ 61

Query: 61  NEQENKKLPPPPPLLPEVEENPPEKKIKATVDEPPPGSVKEGSK---QEEPKTGDGSRSR 118
            +Q+ ++    P  + + E    E K+     +   G V+E  +   QE       SRSR
Sbjct: 62  QQQQQQQQQQNP--IQQAEAVEEEAKVVDQTKKARTGEVEEQKQEMLQESSTKKTSSRSR 121

[Close]

BLAST of MELO3C010939 vs. NCBI nr
Match: gi|764546318|ref|XP_011459553.1| (PREDICTED: parathymosin-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 76.6 bits (187), Expect = 3.2e-11
Identity = 54/136 (39.71%), Postives = 72/136 (52.94%), Query Frame = 1


Query: 1   MGKKKTQKTKEIAVAIAETSTS--KLADDGIGQSIQPRKRGRPRKVLDEQQN---EQE-- 60
           MGKKK QKTKE++VAIAE S++  +       Q   PRKRGRPRK+++EQ +   EQE  
Sbjct: 1   MGKKKPQKTKELSVAIAEASSTGDEAQQQPQPQPQTPRKRGRPRKIIEEQSSTKIEQEAA 60

Query: 61  ------------NKKLPPPPPLLPEVEENPPEKKIKATVDEPPPGSVKEGSKQEEPKTGD 118
                       +KK         + +E   E++ K   + P     KE  ++ EP    
Sbjct: 61  AAAAQQVEGASQSKKAKASEKEEEDKQEQEEEEQQKVKEEGPSSAKPKESEERREP---- 120

The following BLAST results are available for this feature:

BLAST of MELO3C010939 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LRH2_CUCSA	6.1e-46	87.29	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G361610 PE=4 SV=1	[more]
A0A151TC30_CAJCA	1.8e-13	49.21	Uncharacterized protein OS=Cajanus cajan GN=KK1_019184 PE=4 SV=1	[more]
A0A059BQT5_EUCGR	1.5e-12	39.69	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F01898 PE=4 SV=1	[more]
B9R7T8_RICCO	3.7e-11	41.98	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1594200 PE=4 SV=1	[more]
A0A067L321_JATCU	8.4e-11	43.09	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04424 PE=4 SV=1	[more]

BLAST of MELO3C010939 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700207477\|gb\|KGN62596.1\|	8.8e-46	87.29	hypothetical protein Csa_2G361610 [Cucumis sativus]	[more]
gi\|645228026\|ref\|XP_008220798.1\|	1.2e-13	41.73	PREDICTED: zinc finger and BTB domain-containing protein 47 [Prunus mume]	[more]
gi\|1012353395\|gb\|KYP64583.1\|	2.6e-13	49.21	hypothetical protein KK1_019184 [Cajanus cajan]	[more]
gi\|702369304\|ref\|XP_010061321.1\|	2.2e-12	39.69	PREDICTED: ataxin-8-like [Eucalyptus grandis]	[more]
gi\|764546318\|ref\|XP_011459553.1\|	3.2e-11	39.71	PREDICTED: parathymosin-like [Fragaria vesca subsp. vesca]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU56485	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C010939T1	MELO3C010939T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU56485	MU56485	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37615	FAMILY NOT NAMED	coord: 1..117 score: 3.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C010939	Csa2G361610	Cucumber (Chinese Long) v2	cumeB117
MELO3C010939	Cla022497	Watermelon (97103) v1	mewmB300
MELO3C010939	ClCG08G015120	Watermelon (Charleston Gray)	mewcgB295
MELO3C010939	Cla97C08G158700	Watermelon (97103) v2	mewmbB302
MELO3C010939	Bhi04G000226	Wax gourd	mewgoB322
MELO3C010939	CSPI02G20000	Wild cucumber (PI 183967)	cpimeB118
MELO3C010939	Cucsa.232200	Cucumber (Gy14) v1	cgymeB389
MELO3C010939	CmaCh05G002360	Cucurbita maxima (Rimu)	cmameB727
MELO3C010939	CmoCh12G004260	Cucurbita moschata (Rifu)	cmomeB146
MELO3C010939	CmoCh05G002440	Cucurbita moschata (Rifu)	cmomeB718
MELO3C010939	Lsi08G013990	Bottle gourd (USVL1VR-Ls)	lsimeB469
MELO3C010939	Cp4.1LG11g02000	Cucurbita pepo (Zucchini)	cpemeB091
MELO3C010939	Cp4.1LG07g04350	Cucurbita pepo (Zucchini)	cpemeB754
MELO3C010939	Carg04057	Silver-seed gourd	carmeB0953
MELO3C010939	CsaV3_2G028670	Cucumber (Chinese Long) v3	cucmeB124

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C010939	Cucumber (Gy14) v1	cgymeB555
MELO3C010939	Cucurbita maxima (Rimu)	cmameB023
MELO3C010939	Cucurbita maxima (Rimu)	cmameB156
MELO3C010939	Cucurbita maxima (Rimu)	cmameB412
MELO3C010939	Cucurbita maxima (Rimu)	cmameB594
MELO3C010939	Cucurbita moschata (Rifu)	cmomeB012
MELO3C010939	Cucurbita moschata (Rifu)	cmomeB403
MELO3C010939	Cucurbita moschata (Rifu)	cmomeB584
MELO3C010939	Wild cucumber (PI 183967)	cpimeB195
MELO3C010939	Wild cucumber (PI 183967)	cpimeB478
MELO3C010939	Cucumber (Chinese Long) v2	cumeB203
MELO3C010939	Cucumber (Chinese Long) v2	cumeB480
MELO3C010939	Watermelon (Charleston Gray)	mewcgB281
MELO3C010939	Watermelon (Charleston Gray)	mewcgB287
MELO3C010939	Watermelon (97103) v1	mewmB317
MELO3C010939	Watermelon (97103) v1	mewmB324
MELO3C010939	Cucurbita pepo (Zucchini)	cpemeB052
MELO3C010939	Cucurbita pepo (Zucchini)	cpemeB508
MELO3C010939	Cucurbita pepo (Zucchini)	cpemeB717
MELO3C010939	Bottle gourd (USVL1VR-Ls)	lsimeB132
MELO3C010939	Bottle gourd (USVL1VR-Ls)	lsimeB302
MELO3C010939	Cucumber (Gy14) v2	cgybmeB102
MELO3C010939	Cucumber (Gy14) v2	cgybmeB169
MELO3C010939	Cucumber (Gy14) v2	cgybmeB420
MELO3C010939	Silver-seed gourd	carmeB0105
MELO3C010939	Silver-seed gourd	carmeB0186
MELO3C010939	Silver-seed gourd	carmeB0404
MELO3C010939	Silver-seed gourd	carmeB0927
MELO3C010939	Cucumber (Chinese Long) v3	cucmeB201
MELO3C010939	Watermelon (97103) v2	mewmbB277
MELO3C010939	Watermelon (97103) v2	mewmbB293
MELO3C010939	Melon (DHL92) v3.5.1	memeB118
MELO3C010939	Melon (DHL92) v3.5.1	memeB134