MELO3C010561 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C010561
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Seed maturation protein
Location	chr7 : 7007958 .. 7008266 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAAGAGCAAAGACGATATAACATACGGTGCTGCTCAAGCTAAATTATCCGAAGACGAAGCCCTAAGAGTCGCCTACAAGCACGGTACGCCGCTTGAATCTGGGAAAATTTCGGACTCCGATACTGTCGATCTTTTTTCCAGTGCACACAAAATTGCTCAAGATACTTCTGGCGCTCGTTCTTCCGCGGCCGCTGCTCAATCGATTTCATCCAATCAGGTGCATCGCGGTGGCGATGCTAATGATGAAGAAGCTGGAACGGGATGTGATACTGCCGATCCTTCCGCCGGGCGCCGGTTCGGTTGA

mRNA sequence

ATGGCGAAGAGCAAAGACGATATAACATACGGTGCTGCTCAAGCTAAATTATCCGAAGACGAAGCCCTAAGAGTCGCCTACAAGCACGGTACGCCGCTTGAATCTGGGAAAATTTCGGACTCCGATACTGTCGATCTTTTTTCCAGTGCACACAAAATTGCTCAAGATACTTCTGGCGCTCGTTCTTCCGCGGCCGCTGCTCAATCGATTTCATCCAATCAGGTGCATCGCGGTGGCGATGCTAATGATGAAGAAGCTGGAACGGGATGTGATACTGCCGATCCTTCCGCCGGGCGCCGGTTCGGTTGA

Coding sequence (CDS)

ATGGCGAAGAGCAAAGACGATATAACATACGGTGCTGCTCAAGCTAAATTATCCGAAGACGAAGCCCTAAGAGTCGCCTACAAGCACGGTACGCCGCTTGAATCTGGGAAAATTTCGGACTCCGATACTGTCGATCTTTTTTCCAGTGCACACAAAATTGCTCAAGATACTTCTGGCGCTCGTTCTTCCGCGGCCGCTGCTCAATCGATTTCATCCAATCAGGTGCATCGCGGTGGCGATGCTAATGATGAAGAAGCTGGAACGGGATGTGATACTGCCGATCCTTCCGCCGGGCGCCGGTTCGGTTGA

Protein sequence

MAKSKDDITYGAAQAKLSEDEALRVAYKHGTPLESGKISDSDTVDLFSSAHKIAQDTSGARSSAAAAQSISSNQVHRGGDANDEEAGTGCDTADPSAGRRFG*

Homology

[Close]

BLAST of MELO3C010561 vs. TrEMBL
Match: E5GBB4_CUCME (Seed maturation protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 2.3e-49
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1


Query: 1   MAKSKDDITYGAAQAKLSEDEALRVAYKHGTPLESGKISDSDTVDLFSSAHKIAQDTSGA 60
           MAKSKDDITYGAAQAKLSEDEALRVAYKHGTPLESGKISDSDTVDLFSSAHKIAQDTSGA
Sbjct: 1   MAKSKDDITYGAAQAKLSEDEALRVAYKHGTPLESGKISDSDTVDLFSSAHKIAQDTSGA 60

Query: 61  RSSAAAAQSISSNQVHRGGDANDEEAGTGCDTADPSAGRRFG 103
           RSSAAAAQSISSNQVHRGGDANDEEAGTGCDTADPSAGRRFG
Sbjct: 61  RSSAAAAQSISSNQVHRGGDANDEEAGTGCDTADPSAGRRFG 102

[Close]

BLAST of MELO3C010561 vs. TrEMBL
Match: A0A067JQL1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22663 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.6e-18
Identity = 53/91 (58.24%), Postives = 63/91 (69.23%), Query Frame = 1


Query: 1  MAKSKDDITYGAAQAKLSEDEALRVAYKHGTPLESGKISDSDTVDLFSSAHKIAQDTSGA 60
          MAKSKDDI YG AQAKLSEDE+LR+ YKHGTPLE GKI+DS+TVDLFSSAH I + +  A
Sbjct: 1  MAKSKDDIKYGTAQAKLSEDESLRMRYKHGTPLEGGKIADSETVDLFSSAHNIPKSSDSA 60

Query: 61 RSSAAAAQSISSNQVHRGGDANDEEAGTGCD 92
           S+  +     SN    GG+A +    T  D
Sbjct: 61 TSTDQSQSHRPSNAA--GGNATNNNPTTTND 89

[Close]

BLAST of MELO3C010561 vs. TrEMBL
Match: B9RI57_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1576520 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 4.7e-18
Identity = 52/92 (56.52%), Postives = 67/92 (72.83%), Query Frame = 1


Query: 1  MAKSKDDITYGAAQAKLSEDEALRVAYKHGTPLESGKISDSDTVDLFSSAHKIAQDTSGA 60
          MAKSKDDI YG AQAKLS+DEA+RV YKHGTPLE GKI+DS+ VDLFSSAH I+ + S  
Sbjct: 1  MAKSKDDIKYGTAQAKLSDDEAVRVRYKHGTPLEGGKIADSEPVDLFSSAHNISSNPSDD 60

Query: 61 RSSAAAAQSISSNQVHRGGDANDEEAGTGCDT 93
           +S   +Q +++NQ   GG+ ++  + T   T
Sbjct: 61 STSTHQSQ-LNNNQNDFGGNTSNPASTTTTTT 91

[Close]

BLAST of MELO3C010561 vs. TrEMBL
Match: A0A072VAH4_MEDTR (Seed maturation protein OS=Medicago truncatula GN=MTR_2g069650 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.2e-16
Identity = 49/91 (53.85%), Postives = 60/91 (65.93%), Query Frame = 1


Query: 1  MAKSKDDITYGAAQAKLSEDEALRVAYKHGTPLESGKISDSDTVDLFSSAHKIAQDTSGA 60
          MAKSKDDI YG AQAKLSEDE LRV YKHGTPLE GKI+DS+ VDLFSSA  I++     
Sbjct: 1  MAKSKDDIKYGTAQAKLSEDEVLRVRYKHGTPLEGGKIADSEPVDLFSSAQNISKSDQQQ 60

Query: 61 RSSAAAAQSISSNQVHRG-GDANDEEAGTGC 91
          +++ +    +  +    G GD+ D   G  C
Sbjct: 61 QTADSNQSQLQRDDTKDGEGDSTDFTPGAPC 91

[Close]

BLAST of MELO3C010561 vs. TrEMBL
Match: V4T275_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023629mg PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.5e-16
Identity = 51/88 (57.95%), Postives = 62/88 (70.45%), Query Frame = 1


Query: 1  MAKSKDDITYGAAQAKLSEDEALRVAYKHGTPLESGKISDSDTVDLFSSAHKIAQDT--- 60
          MAKSKDDI YG AQA+LSEDEA+RV YKHGTPLE GKI+DS+ VDLFSSAH ++ +T   
Sbjct: 1  MAKSKDDIKYGTAQARLSEDEAVRVRYKHGTPLEGGKIADSEPVDLFSSAHNLSSETPKN 60

Query: 61 ----SGARSSAAAAQSISSNQVHRGGDA 82
              S   S+  AA +   +Q+ R  DA
Sbjct: 61 HQPPSDDGSTHQAAGAGHQSQLRRDPDA 88

[Close]

BLAST of MELO3C010561 vs. TAIR10
Match: AT3G12960.1 (AT3G12960.1 unknown protein)

HSP 1 Score: 84.7 bits (208), Expect = 3.6e-17
Identity = 43/66 (65.15%), Postives = 51/66 (77.27%), Query Frame = 1


Query: 1  MAKSKDDITYGAAQAKLSEDEALRVAYKHGTPLESGKISDSDTVDLFSSAHKIAQDTSGA 60
          MAK+KDDI Y  AQAKLSEDEA+RV+YKHGTPLE GKI++S+ V+LFSSA +I +   G 
Sbjct: 1  MAKNKDDIKYATAQAKLSEDEAIRVSYKHGTPLEGGKIAESEPVELFSSAQRIEK---GK 60

Query: 61 RSSAAA 67
            SAA+
Sbjct: 61 EQSAAS 63

[Close]

BLAST of MELO3C010561 vs. NCBI nr
Match: gi|659087135|ref|XP_008444288.1| (PREDICTED: uncharacterized protein LOC103487654 [Cucumis melo])

HSP 1 Score: 202.6 bits (514), Expect = 3.3e-49
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1


Query: 1   MAKSKDDITYGAAQAKLSEDEALRVAYKHGTPLESGKISDSDTVDLFSSAHKIAQDTSGA 60
           MAKSKDDITYGAAQAKLSEDEALRVAYKHGTPLESGKISDSDTVDLFSSAHKIAQDTSGA
Sbjct: 1   MAKSKDDITYGAAQAKLSEDEALRVAYKHGTPLESGKISDSDTVDLFSSAHKIAQDTSGA 60

Query: 61  RSSAAAAQSISSNQVHRGGDANDEEAGTGCDTADPSAGRRFG 103
           RSSAAAAQSISSNQVHRGGDANDEEAGTGCDTADPSAGRRFG
Sbjct: 61  RSSAAAAQSISSNQVHRGGDANDEEAGTGCDTADPSAGRRFG 102

[Close]

BLAST of MELO3C010561 vs. NCBI nr
Match: gi|1009129821|ref|XP_015881974.1| (PREDICTED: uncharacterized protein LOC107417839 [Ziziphus jujuba])

HSP 1 Score: 99.4 bits (246), Expect = 4.0e-18
Identity = 48/87 (55.17%), Postives = 64/87 (73.56%), Query Frame = 1


Query: 1  MAKSKDDITYGAAQAKLSEDEALRVAYKHGTPLESGKISDSDTVDLFSSAHKIAQDTSGA 60
          MAKSKDDI YG AQA+LSEDEA+RVAYKHGTPLE GK++DS+ VDLFSSAH I++ ++  
Sbjct: 1  MAKSKDDIKYGTAQARLSEDEAVRVAYKHGTPLEGGKVADSEPVDLFSSAHSISKASTHQ 60

Query: 61 RSSAAAAQSISSNQVHRGGDANDEEAG 88
          +   A + + + +Q H     ++ E G
Sbjct: 61 QDQPADSSTTNQSQQHHEPHMDEGEGG 87

[Close]

BLAST of MELO3C010561 vs. NCBI nr
Match: gi|802743943|ref|XP_012087428.1| (PREDICTED: uncharacterized protein LOC105646223 [Jatropha curcas])

HSP 1 Score: 99.0 bits (245), Expect = 5.2e-18
Identity = 53/91 (58.24%), Postives = 63/91 (69.23%), Query Frame = 1


Query: 1  MAKSKDDITYGAAQAKLSEDEALRVAYKHGTPLESGKISDSDTVDLFSSAHKIAQDTSGA 60
          MAKSKDDI YG AQAKLSEDE+LR+ YKHGTPLE GKI+DS+TVDLFSSAH I + +  A
Sbjct: 1  MAKSKDDIKYGTAQAKLSEDESLRMRYKHGTPLEGGKIADSETVDLFSSAHNIPKSSDSA 60

Query: 61 RSSAAAAQSISSNQVHRGGDANDEEAGTGCD 92
           S+  +     SN    GG+A +    T  D
Sbjct: 61 TSTDQSQSHRPSNAA--GGNATNNNPTTTND 89

[Close]

BLAST of MELO3C010561 vs. NCBI nr
Match: gi|255544730|ref|XP_002513426.1| (PREDICTED: uncharacterized protein LOC8272645 [Ricinus communis])

HSP 1 Score: 98.6 bits (244), Expect = 6.8e-18
Identity = 52/92 (56.52%), Postives = 67/92 (72.83%), Query Frame = 1


Query: 1  MAKSKDDITYGAAQAKLSEDEALRVAYKHGTPLESGKISDSDTVDLFSSAHKIAQDTSGA 60
          MAKSKDDI YG AQAKLS+DEA+RV YKHGTPLE GKI+DS+ VDLFSSAH I+ + S  
Sbjct: 1  MAKSKDDIKYGTAQAKLSDDEAVRVRYKHGTPLEGGKIADSEPVDLFSSAHNISSNPSDD 60

Query: 61 RSSAAAAQSISSNQVHRGGDANDEEAGTGCDT 93
           +S   +Q +++NQ   GG+ ++  + T   T
Sbjct: 61 STSTHQSQ-LNNNQNDFGGNTSNPASTTTTTT 91

[Close]

BLAST of MELO3C010561 vs. NCBI nr
Match: gi|922391812|ref|XP_013464318.1| (seed maturation protein [Medicago truncatula])

HSP 1 Score: 94.0 bits (232), Expect = 1.7e-16
Identity = 49/91 (53.85%), Postives = 60/91 (65.93%), Query Frame = 1


Query: 1  MAKSKDDITYGAAQAKLSEDEALRVAYKHGTPLESGKISDSDTVDLFSSAHKIAQDTSGA 60
          MAKSKDDI YG AQAKLSEDE LRV YKHGTPLE GKI+DS+ VDLFSSA  I++     
Sbjct: 1  MAKSKDDIKYGTAQAKLSEDEVLRVRYKHGTPLEGGKIADSEPVDLFSSAQNISKSDQQQ 60

Query: 61 RSSAAAAQSISSNQVHRG-GDANDEEAGTGC 91
          +++ +    +  +    G GD+ D   G  C
Sbjct: 61 QTADSNQSQLQRDDTKDGEGDSTDFTPGAPC 91

The following BLAST results are available for this feature:

BLAST of MELO3C010561 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GBB4_CUCME	2.3e-49	100.00	Seed maturation protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A067JQL1_JATCU	3.6e-18	58.24	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22663 PE=4 SV=1	[more]
B9RI57_RICCO	4.7e-18	56.52	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1576520 PE=4 SV=1	[more]
A0A072VAH4_MEDTR	1.2e-16	53.85	Seed maturation protein OS=Medicago truncatula GN=MTR_2g069650 PE=4 SV=1	[more]
V4T275_9ROSI	1.5e-16	57.95	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023629mg PE=4 SV=1	[more]

BLAST of MELO3C010561 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G12960.1	3.6e-17	65.15	unknown protein	[more]

BLAST of MELO3C010561 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659087135\|ref\|XP_008444288.1\|	3.3e-49	100.00	PREDICTED: uncharacterized protein LOC103487654 [Cucumis melo]	[more]
gi\|1009129821\|ref\|XP_015881974.1\|	4.0e-18	55.17	PREDICTED: uncharacterized protein LOC107417839 [Ziziphus jujuba]	[more]
gi\|802743943\|ref\|XP_012087428.1\|	5.2e-18	58.24	PREDICTED: uncharacterized protein LOC105646223 [Jatropha curcas]	[more]
gi\|255544730\|ref\|XP_002513426.1\|	6.8e-18	56.52	PREDICTED: uncharacterized protein LOC8272645 [Ricinus communis]	[more]
gi\|922391812\|ref\|XP_013464318.1\|	1.7e-16	53.85	seed maturation protein [Medicago truncatula]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU55335	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C010561T1	MELO3C010561T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU55335	MU55335	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37732	FAMILY NOT NAMED	coord: 2..100 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C010561	Cla023224	Watermelon (97103) v1	mewmB544
MELO3C010561	ClCG11G016360	Watermelon (Charleston Gray)	mewcgB462
MELO3C010561	Bhi09G003025	Wax gourd	mewgoB596
MELO3C010561	CSPI04G21490	Wild cucumber (PI 183967)	cpimeB317
MELO3C010561	CmaCh01G013020	Cucurbita maxima (Rimu)	cmameB448
MELO3C010561	CmoCh01G013570	Cucurbita moschata (Rifu)	cmomeB439
MELO3C010561	Lsi04G018720	Bottle gourd (USVL1VR-Ls)	lsimeB324
MELO3C010561	Carg14774	Silver-seed gourd	carmeB0318

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C010561	Silver-seed gourd	carmeB1012
MELO3C010561	Cucumber (Chinese Long) v3	cucmeB325
MELO3C010561	Watermelon (97103) v2	mewmbB472
MELO3C010561	Cucumber (Gy14) v1	cgymeB041
MELO3C010561	Cucurbita maxima (Rimu)	cmameB036
MELO3C010561	Cucurbita maxima (Rimu)	cmameB433
MELO3C010561	Cucurbita moschata (Rifu)	cmomeB025
MELO3C010561	Cucurbita moschata (Rifu)	cmomeB423
MELO3C010561	Cucumber (Chinese Long) v2	cumeB321
MELO3C010561	Cucurbita pepo (Zucchini)	cpemeB539
MELO3C010561	Cucurbita pepo (Zucchini)	cpemeB535
MELO3C010561	Cucurbita pepo (Zucchini)	cpemeB730