CSPI04G21490 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G21490
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Seed maturation protein
Location	Chr4 : 19966349 .. 19966895 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGCGGCTTCTCTTCTTCGTGTCATCATATTCGCCTAATACGCCAATTCCAAAACCCAATCCGTCATCTCCAATATTAATCACGAGATACAGAGATCGTGCTGGAGTGAAGTGAATCAACAATAATGGCGAAGAGCAAAGACGATATAACATACGGTACTGCTCAAGCTAAATTATCCGAAGATGAAGTCCTAAGAGTCGCTTACAAGCACGGTACGCCGCTCGAATCGGGGAAAATTGCGGACTCCGATACTGTCGATCTGTTTTCCAGTGCAAACAAAATTGCTCGAGATACTTCTGACGGTCGATCTTCCGCGGCCGCTACTCAATCAATTTCATCCAATCAGGTGCATCACAGCGGCGATGCTAATGATAAAGAAGCTGGGAAGGGGATGTGATACTGCCGATCCTTCCGCCGGGCGCCGGTTCGGTTGAATCGGAGCGGCGAGATGTTTGCTCTAGCTTAAGGAATCGCTACTCTTTGAGGTTTATAAGTTTGTAGTTTGTAAGGATATACGTTGGGGAATTGATATGAATTCCGTTAGGAC

mRNA sequence

ATGGCGAAGAGCAAAGACGATATAACATACGGTACTGCTCAAGCTAAATTATCCGAAGATGAAGTCCTAAGAGTCGCTTACAAGCACGGTACGCCGCTCGAATCGGGGAAAATTGCGGACTCCGATACTGTCGATCTGTTTTCCAGTGCAAACAAAATTGCTCGAGATACTTCTGACGGTCGATCTTCCGCGGCCGCTACTCAATCAATTTCATCCAATCAGGTGCATCACAGCGGCGATGCTAATGATAAAGAAGCTGGGAAGGGGATGTGA

Coding sequence (CDS)

ATGGCGAAGAGCAAAGACGATATAACATACGGTACTGCTCAAGCTAAATTATCCGAAGATGAAGTCCTAAGAGTCGCTTACAAGCACGGTACGCCGCTCGAATCGGGGAAAATTGCGGACTCCGATACTGTCGATCTGTTTTCCAGTGCAAACAAAATTGCTCGAGATACTTCTGACGGTCGATCTTCCGCGGCCGCTACTCAATCAATTTCATCCAATCAGGTGCATCACAGCGGCGATGCTAATGATAAAGAAGCTGGGAAGGGGATGTGA

Homology

[Close]

BLAST of CSPI04G21490 vs. TrEMBL
Match: E5GBB4_CUCME (Seed maturation protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 2.3e-32
Identity = 77/89 (86.52%), Postives = 81/89 (91.01%), Query Frame = 1


Query: 1  MAKSKDDITYGTAQAKLSEDEVLRVAYKHGTPLESGKIADSDTVDLFSSANKIARDTSDG 60
          MAKSKDDITYG AQAKLSEDE LRVAYKHGTPLESGKI+DSDTVDLFSSA+KIA+DTS  
Sbjct: 1  MAKSKDDITYGAAQAKLSEDEALRVAYKHGTPLESGKISDSDTVDLFSSAHKIAQDTSGA 60

Query: 61 RSSAAATQSISSNQVHHSGDANDKEAGKG 90
          RSSAAA QSISSNQVH  GDAND+EAG G
Sbjct: 61 RSSAAAAQSISSNQVHRGGDANDEEAGTG 89

[Close]

BLAST of CSPI04G21490 vs. TrEMBL
Match: B9RI57_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1576520 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.0e-16
Identity = 50/83 (60.24%), Postives = 64/83 (77.11%), Query Frame = 1


Query: 1  MAKSKDDITYGTAQAKLSEDEVLRVAYKHGTPLESGKIADSDTVDLFSSANKIARDTSDG 60
          MAKSKDDI YGTAQAKLS+DE +RV YKHGTPLE GKIADS+ VDLFSSA+ I+ + SD 
Sbjct: 1  MAKSKDDIKYGTAQAKLSDDEAVRVRYKHGTPLEGGKIADSEPVDLFSSAHNISSNPSDD 60

Query: 61 RSSAAATQSISSNQVHHSGDAND 84
           +S   +Q +++NQ    G+ ++
Sbjct: 61 STSTHQSQ-LNNNQNDFGGNTSN 82

[Close]

BLAST of CSPI04G21490 vs. TrEMBL
Match: A0A067JQL1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22663 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.9e-16
Identity = 50/69 (72.46%), Postives = 57/69 (82.61%), Query Frame = 1


Query: 1  MAKSKDDITYGTAQAKLSEDEVLRVAYKHGTPLESGKIADSDTVDLFSSANKIARDTSDG 60
          MAKSKDDI YGTAQAKLSEDE LR+ YKHGTPLE GKIADS+TVDLFSSA+ I + +SD 
Sbjct: 1  MAKSKDDIKYGTAQAKLSEDESLRMRYKHGTPLEGGKIADSETVDLFSSAHNIPK-SSDS 60

Query: 61 RSSAAATQS 70
           +S   +QS
Sbjct: 61 ATSTDQSQS 68

[Close]

BLAST of CSPI04G21490 vs. TrEMBL
Match: A0A072VAH4_MEDTR (Seed maturation protein OS=Medicago truncatula GN=MTR_2g069650 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 8.7e-16
Identity = 55/89 (61.80%), Postives = 61/89 (68.54%), Query Frame = 1


Query: 1  MAKSKDDITYGTAQAKLSEDEVLRVAYKHGTPLESGKIADSDTVDLFSSANKIARDTSDG 60
          MAKSKDDI YGTAQAKLSEDEVLRV YKHGTPLE GKIADS+ VDLFSSA  I++     
Sbjct: 1  MAKSKDDIKYGTAQAKLSEDEVLRVRYKHGTPLEGGKIADSEPVDLFSSAQNISK----- 60

Query: 61 RSSAAATQSISSNQVHHSGDANDKEAGKG 90
            S    Q+  SNQ     D  D + G+G
Sbjct: 61 --SDQQQQTADSNQSQLQRD--DTKDGEG 80

[Close]

BLAST of CSPI04G21490 vs. TrEMBL
Match: A0A151S2S7_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_029136 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 4.3e-15
Identity = 49/86 (56.98%), Postives = 63/86 (73.26%), Query Frame = 1


Query: 1  MAKSKDDITYGTAQAKLSEDEVLRVAYKHGTPLESGKIADSDTVDLFSSANKIARDTSDG 60
          MAKSKDDI YGTAQA+LSEDE LRVAYKHGTPLE+GKIA+S+ VD+F+SA+ + +     
Sbjct: 1  MAKSKDDIKYGTAQARLSEDEALRVAYKHGTPLEAGKIAESEPVDMFASAHNVPK----- 60

Query: 61 RSSAAATQSISSNQVHHSGDANDKEA 87
            S   T ++ SN   H+ D ND ++
Sbjct: 61 --SHGHTTTMGSNTSGHN-DHNDNQS 78

[Close]

BLAST of CSPI04G21490 vs. TAIR10
Match: AT3G12960.1 (AT3G12960.1 unknown protein)

HSP 1 Score: 85.5 bits (210), Expect = 1.8e-17
Identity = 43/68 (63.24%), Postives = 52/68 (76.47%), Query Frame = 1


Query: 1  MAKSKDDITYGTAQAKLSEDEVLRVAYKHGTPLESGKIADSDTVDLFSSANKIARDTSDG 60
          MAK+KDDI Y TAQAKLSEDE +RV+YKHGTPLE GKIA+S+ V+LFSSA +I +     
Sbjct: 1  MAKNKDDIKYATAQAKLSEDEAIRVSYKHGTPLEGGKIAESEPVELFSSAQRIEKGKEQS 60

Query: 61 RSSAAATQ 69
           +S   TQ
Sbjct: 61 AASGDQTQ 68

[Close]

BLAST of CSPI04G21490 vs. NCBI nr
Match: gi|659087135|ref|XP_008444288.1| (PREDICTED: uncharacterized protein LOC103487654 [Cucumis melo])

HSP 1 Score: 146.0 bits (367), Expect = 3.3e-32
Identity = 77/89 (86.52%), Postives = 81/89 (91.01%), Query Frame = 1


Query: 1  MAKSKDDITYGTAQAKLSEDEVLRVAYKHGTPLESGKIADSDTVDLFSSANKIARDTSDG 60
          MAKSKDDITYG AQAKLSEDE LRVAYKHGTPLESGKI+DSDTVDLFSSA+KIA+DTS  
Sbjct: 1  MAKSKDDITYGAAQAKLSEDEALRVAYKHGTPLESGKISDSDTVDLFSSAHKIAQDTSGA 60

Query: 61 RSSAAATQSISSNQVHHSGDANDKEAGKG 90
          RSSAAA QSISSNQVH  GDAND+EAG G
Sbjct: 61 RSSAAAAQSISSNQVHRGGDANDEEAGTG 89

[Close]

BLAST of CSPI04G21490 vs. NCBI nr
Match: gi|1009129821|ref|XP_015881974.1| (PREDICTED: uncharacterized protein LOC107417839 [Ziziphus jujuba])

HSP 1 Score: 96.7 bits (239), Expect = 2.3e-17
Identity = 49/87 (56.32%), Postives = 65/87 (74.71%), Query Frame = 1


Query: 1  MAKSKDDITYGTAQAKLSEDEVLRVAYKHGTPLESGKIADSDTVDLFSSANKIARDTSDG 60
          MAKSKDDI YGTAQA+LSEDE +RVAYKHGTPLE GK+ADS+ VDLFSSA+ I++ ++  
Sbjct: 1  MAKSKDDIKYGTAQARLSEDEAVRVAYKHGTPLEGGKVADSEPVDLFSSAHSISKASTHQ 60

Query: 61 RSSAAATQSISSNQVHHSGDANDKEAG 88
          +   A + + + +Q HH    ++ E G
Sbjct: 61 QDQPADSSTTNQSQQHHEPHMDEGEGG 87

[Close]

BLAST of CSPI04G21490 vs. NCBI nr
Match: gi|255544730|ref|XP_002513426.1| (PREDICTED: uncharacterized protein LOC8272645 [Ricinus communis])

HSP 1 Score: 92.4 bits (228), Expect = 4.3e-16
Identity = 50/83 (60.24%), Postives = 64/83 (77.11%), Query Frame = 1


Query: 1  MAKSKDDITYGTAQAKLSEDEVLRVAYKHGTPLESGKIADSDTVDLFSSANKIARDTSDG 60
          MAKSKDDI YGTAQAKLS+DE +RV YKHGTPLE GKIADS+ VDLFSSA+ I+ + SD 
Sbjct: 1  MAKSKDDIKYGTAQAKLSDDEAVRVRYKHGTPLEGGKIADSEPVDLFSSAHNISSNPSDD 60

Query: 61 RSSAAATQSISSNQVHHSGDAND 84
           +S   +Q +++NQ    G+ ++
Sbjct: 61 STSTHQSQ-LNNNQNDFGGNTSN 82

[Close]

BLAST of CSPI04G21490 vs. NCBI nr
Match: gi|802743943|ref|XP_012087428.1| (PREDICTED: uncharacterized protein LOC105646223 [Jatropha curcas])

HSP 1 Score: 92.0 bits (227), Expect = 5.6e-16
Identity = 50/69 (72.46%), Postives = 57/69 (82.61%), Query Frame = 1


Query: 1  MAKSKDDITYGTAQAKLSEDEVLRVAYKHGTPLESGKIADSDTVDLFSSANKIARDTSDG 60
          MAKSKDDI YGTAQAKLSEDE LR+ YKHGTPLE GKIADS+TVDLFSSA+ I + +SD 
Sbjct: 1  MAKSKDDIKYGTAQAKLSEDESLRMRYKHGTPLEGGKIADSETVDLFSSAHNIPK-SSDS 60

Query: 61 RSSAAATQS 70
           +S   +QS
Sbjct: 61 ATSTDQSQS 68

[Close]

BLAST of CSPI04G21490 vs. NCBI nr
Match: gi|1021500133|ref|XP_016193336.1| (PREDICTED: uncharacterized protein LOC107634308 [Arachis ipaensis])

HSP 1 Score: 91.3 bits (225), Expect = 9.5e-16
Identity = 52/86 (60.47%), Postives = 65/86 (75.58%), Query Frame = 1


Query: 1  MAKSKDDITYGTAQAKLSEDEVLRVAYKHGTPLESGKIADSDTVDLFSSANKIARDTSDG 60
          MA+SKDDITYGTAQA++S+DE LRVAYKHGTPLE+GKIA+S+ VDLF SA+ I       
Sbjct: 1  MAQSKDDITYGTAQARVSDDEALRVAYKHGTPLEAGKIAESEPVDLFQSAHNI------- 60

Query: 61 RSSAAATQSISSNQVHHSGDANDKEA 87
           S ++ATQ  SS +     D+N+KEA
Sbjct: 61 -SKSSATQDSSSQE---KRDSNNKEA 75

The following BLAST results are available for this feature:

BLAST of CSPI04G21490 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI04G21490 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GBB4_CUCME	2.3e-32	86.52	Seed maturation protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
B9RI57_RICCO	3.0e-16	60.24	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1576520 PE=4 SV=1	[more]
A0A067JQL1_JATCU	3.9e-16	72.46	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22663 PE=4 SV=1	[more]
A0A072VAH4_MEDTR	8.7e-16	61.80	Seed maturation protein OS=Medicago truncatula GN=MTR_2g069650 PE=4 SV=1	[more]
A0A151S2S7_CAJCA	4.3e-15	56.98	Uncharacterized protein OS=Cajanus cajan GN=KK1_029136 PE=4 SV=1	[more]

BLAST of CSPI04G21490 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G12960.1	1.8e-17	63.24	unknown protein	[more]

BLAST of CSPI04G21490 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659087135\|ref\|XP_008444288.1\|	3.3e-32	86.52	PREDICTED: uncharacterized protein LOC103487654 [Cucumis melo]	[more]
gi\|1009129821\|ref\|XP_015881974.1\|	2.3e-17	56.32	PREDICTED: uncharacterized protein LOC107417839 [Ziziphus jujuba]	[more]
gi\|255544730\|ref\|XP_002513426.1\|	4.3e-16	60.24	PREDICTED: uncharacterized protein LOC8272645 [Ricinus communis]	[more]
gi\|802743943\|ref\|XP_012087428.1\|	5.6e-16	72.46	PREDICTED: uncharacterized protein LOC105646223 [Jatropha curcas]	[more]
gi\|1021500133\|ref\|XP_016193336.1\|	9.5e-16	60.47	PREDICTED: uncharacterized protein LOC107634308 [Arachis ipaensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G21490.1	CSPI04G21490.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37732	FAMILY NOT NAMED	coord: 2..54 score: 6.0
None	No IPR available	PANTHER	PTHR37732:SF1	SUBFAMILY NOT NAMED	coord: 2..54 score: 6.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI04G21490	Cla023224	Watermelon (97103) v1	cpiwmB356
CSPI04G21490	MELO3C010561	Melon (DHL92) v3.5.1	cpimeB317
CSPI04G21490	ClCG11G016360	Watermelon (Charleston Gray)	cpiwcgB289
CSPI04G21490	Lsi04G018720	Bottle gourd (USVL1VR-Ls)	cpilsiB283
CSPI04G21490	MELO3C010561.2	Melon (DHL92) v3.6.1	cpimedB309
CSPI04G21490	CsaV3_4G031820	Cucumber (Chinese Long) v3	cpicucB212
CSPI04G21490	Bhi09G003025	Wax gourd	cpiwgoB421
CSPI04G21490	CmaCh01G013020	Cucurbita maxima (Rimu)	cmacpiB469
CSPI04G21490	CmoCh01G013570	Cucurbita moschata (Rifu)	cmocpiB459
CSPI04G21490	Carg14774	Silver-seed gourd	carcpiB0344

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI04G21490	Cucurbita maxima (Rimu)	cmacpiB024
CSPI04G21490	Cucurbita moschata (Rifu)	cmocpiB015
CSPI04G21490	Cucumber (Chinese Long) v2	cpicuB181
CSPI04G21490	Cucurbita pepo (Zucchini)	cpecpiB574
CSPI04G21490	Cucurbita pepo (Zucchini)	cpecpiB788
CSPI04G21490	Cucumber (Gy14) v2	cgybcpiB169
CSPI04G21490	Silver-seed gourd	carcpiB1082
CSPI04G21490	Watermelon (97103) v2	cpiwmbB286
CSPI04G21490	Cucumber (Gy14) v1	cgycpiB043