MELO3C010182.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C010182.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Glycine-rich protein
Location	chr02 : 15177351 .. 15178182 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTCCAAAAATTACACAAAACAAAAAACAAAGCATTTCATTACTCTCAAATTCTAGTTCCCGTTAAAACCTTCTTCAATTTTGGTTCAATTACCAATCACACAAATAATGGCTTCCATTAGGGGTGTTGCCGTTGTCACTTTCCTACTTGGCGTGTCCGTTATTGTATCAGAAAGCCGTGTGGCTAGAAAAGACTTGGGCCTCGACCTTGGCGGAATGGGCCTTGGTGTTGGAACAGGAGTGGGCTTGGGCTTAGATGGAAGTGGGTCGGGCTTTGGGTCTGGGCCTGGGTCCAGTTCTGCTTCCTCATCACACTCCTCAAGCTCCAGCTCTGGCTCCGACGCTGGGTCTGAAGCCGGCTCATACGCTGGCTCTTATGCCGGGTCTCGGGCCGGATCTGGTTCGGGCAGAAACAGAAACGGGGGATCCGGTTCCGGTTCAGGGACGGGAAACGGTGGAGAAGGATACGGAGAGGGGCATGGATACGGCGAGGGGCATGGTTATGGCAACGGTGGCGAAAACTGAGATCGAACTTGTATATGAAATTAATTAAGGATTATCGTCATCTTTTCCTTTTGCAAATAGATGAATAAGCTATAGATGATGAATCCTTAATTGTACTCCTGTTTTGTTCTTTTAGTCTAGTTTATATATATATATACACACAGATATGAAGTTCGAATAAAAATGTTCTTCGTATTGAGTGTTAATTAAATTATGAATAATTATAATAGATAGTAATTTTAGTAATAATAATCAAATGTAGAGTAACATTTTTAAAAGATTACAGTTATAGTTGTTGTTACAAAGATAATAAAAAGAGATTATTGTGT

mRNA sequence

GCTCCAAAAATTACACAAAACAAAAAACAAAGCATTTCATTACTCTCAAATTCTAGTTCCCGTTAAAACCTTCTTCAATTTTGGTTCAATTACCAATCACACAAATAATGGCTTCCATTAGGGGTGTTGCCGTTGTCACTTTCCTACTTGGCGTGTCCGTTATTGTATCAGAAAGCCGTGTGGCTAGAAAAGACTTGGGCCTCGACCTTGGCGGAATGGGCCTTGGTGTTGGAACAGGAGTGGGCTTGGGCTTAGATGGAAGTGGGTCGGGCTTTGGGTCTGGGCCTGGGTCCAGTTCTGCTTCCTCATCACACTCCTCAAGCTCCAGCTCTGGCTCCGACGCTGGGTCTGAAGCCGGCTCATACGCTGGCTCTTATGCCGGGTCTCGGGCCGGATCTGGTTCGGGCAGAAACAGAAACGGGGGATCCGGTTCCGGTTCAGGGACGGGAAACGGTGGAGAAGGATACGGAGAGGGGCATGGATACGGCGAGGGGCATGGTTATGGCAACGGTGGCGAAAACTGAGATCGAACTTGTATATGAAATTAATTAAGGATTATCGTCATCTTTTCCTTTTGCAAATAGATGAATAAGCTATAGATGATGAATCCTTAATTGTACTCCTGTTTTGTTCTTTTAGTCTAGTTTATATATATATATACACACAGATATGAAGTTCGAATAAAAATGTTCTTCGTATTGAGTGTTAATTAAATTATGAATAATTATAATAGATAGTAATTTTAGTAATAATAATCAAATGTAGAGTAACATTTTTAAAAGATTACAGTTATAGTTGTTGTTACAAAGATAATAAAAAGAGATTATTGTGT

Coding sequence (CDS)

ATGGCTTCCATTAGGGGTGTTGCCGTTGTCACTTTCCTACTTGGCGTGTCCGTTATTGTATCAGAAAGCCGTGTGGCTAGAAAAGACTTGGGCCTCGACCTTGGCGGAATGGGCCTTGGTGTTGGAACAGGAGTGGGCTTGGGCTTAGATGGAAGTGGGTCGGGCTTTGGGTCTGGGCCTGGGTCCAGTTCTGCTTCCTCATCACACTCCTCAAGCTCCAGCTCTGGCTCCGACGCTGGGTCTGAAGCCGGCTCATACGCTGGCTCTTATGCCGGGTCTCGGGCCGGATCTGGTTCGGGCAGAAACAGAAACGGGGGATCCGGTTCCGGTTCAGGGACGGGAAACGGTGGAGAAGGATACGGAGAGGGGCATGGATACGGCGAGGGGCATGGTTATGGCAACGGTGGCGAAAACTGA

Protein sequence

MASIRGVAVVTFLLGVSVIVSESRVARKDLGLDLGGMGLGVGTGVGLGLDGSGSGFGSGPGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGTGNGGEGYGEGHGYGEGHGYGNGGEN

Homology

[Close]

BLAST of MELO3C010182.2 vs. NCBI nr
Match: XP_008443812.1 (PREDICTED: putative glycine-rich cell wall structural protein 1 [Cucumis melo])

HSP 1 Score: 58.2 bits (139), Expect = 2.6e-05
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 0


Query: 1  MASIRGVAVVTFLLGVSVIVSESRVARKDLGL 33
          MASIRGVAVVTFLLGVSVIVSESRVARKDLGL
Sbjct: 1  MASIRGVAVVTFLLGVSVIVSESRVARKDLGL 32

[Close]

BLAST of MELO3C010182.2 vs. NCBI nr
Match: XP_011656035.1 (PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis sativus] >KGN65266.1 hypothetical protein Csa_1G287000 [Cucumis sativus])

HSP 1 Score: 55.8 bits (133), Expect = 1.3e-04
Identity = 31/32 (96.88%), Postives = 31/32 (96.88%), Query Frame = 0


Query: 1  MASIRGVAVVTFLLGVSVIVSESRVARKDLGL 33
          MASIR VAVVTFLLGVSVIVSESRVARKDLGL
Sbjct: 1  MASIRSVAVVTFLLGVSVIVSESRVARKDLGL 32

[Close]

BLAST of MELO3C010182.2 vs. TrEMBL
Match: tr|A0A1S3B8Y8|A0A1S3B8Y8_CUCME (putative glycine-rich cell wall structural protein 1 OS=Cucumis melo OX=3656 GN=LOC103487315 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.7e-05
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 0


Query: 1  MASIRGVAVVTFLLGVSVIVSESRVARKDLGL 33
          MASIRGVAVVTFLLGVSVIVSESRVARKDLGL
Sbjct: 1  MASIRGVAVVTFLLGVSVIVSESRVARKDLGL 32

[Close]

BLAST of MELO3C010182.2 vs. TrEMBL
Match: tr|A0A0A0LZ57|A0A0A0LZ57_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G287000 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 8.7e-05
Identity = 31/32 (96.88%), Postives = 31/32 (96.88%), Query Frame = 0


Query: 1  MASIRGVAVVTFLLGVSVIVSESRVARKDLGL 33
          MASIR VAVVTFLLGVSVIVSESRVARKDLGL
Sbjct: 1  MASIRSVAVVTFLLGVSVIVSESRVARKDLGL 32

The following BLAST results are available for this feature:

BLAST of MELO3C010182.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008443812.1	2.6e-05	100.00	PREDICTED: putative glycine-rich cell wall structural protein 1 [Cucumis melo]	[more]
XP_011656035.1	1.3e-04	96.88	PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis sativus] >K...	[more]

BLAST of MELO3C010182.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C010182.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C010182.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B8Y8\|A0A1S3B8Y8_CUCME	1.7e-05	100.00	putative glycine-rich cell wall structural protein 1 OS=Cucumis melo OX=3656 GN=...	[more]
tr\|A0A0A0LZ57\|A0A0A0LZ57_CUCSA	8.7e-05	96.88	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G287000 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C010182.2.1	MELO3C010182.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..138
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..82
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..114
None	No IPR available	PANTHER	PTHR38934	FAMILY NOT NAMED	coord: 1..135
None	No IPR available	PANTHER	PTHR38934:SF5	GLYCINE-RICH PROTEIN	coord: 1..135

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C010182.2	CsaV3_1G029370	Cucumber (Chinese Long) v3	cucmedB052

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C010182.2	Cucumber (Gy14) v2	cgybmedB045
MELO3C010182.2	Cucumber (Gy14) v2	cgybmedB094
MELO3C010182.2	Cucumber (Gy14) v1	cgymedB101
MELO3C010182.2	Cucurbita maxima (Rimu)	cmamedB060
MELO3C010182.2	Cucurbita maxima (Rimu)	cmamedB112
MELO3C010182.2	Cucurbita maxima (Rimu)	cmamedB168
MELO3C010182.2	Cucurbita moschata (Rifu)	cmomedB052
MELO3C010182.2	Cucurbita moschata (Rifu)	cmomedB105
MELO3C010182.2	Cucurbita moschata (Rifu)	cmomedB159
MELO3C010182.2	Cucurbita pepo (Zucchini)	cpemedB392
MELO3C010182.2	Cucurbita pepo (Zucchini)	cpemedB734
MELO3C010182.2	Wild cucumber (PI 183967)	cpimedB051
MELO3C010182.2	Wild cucumber (PI 183967)	cpimedB107
MELO3C010182.2	Cucumber (Chinese Long) v2	cumedB054
MELO3C010182.2	Cucumber (Chinese Long) v2	cumedB108
MELO3C010182.2	Melon (DHL92) v3.6.1	medmedB109
MELO3C010182.2	Bottle gourd (USVL1VR-Ls)	lsimedB110
MELO3C010182.2	Bottle gourd (USVL1VR-Ls)	lsimedB426
MELO3C010182.2	Watermelon (Charleston Gray)	medwcgB220
MELO3C010182.2	Watermelon (Charleston Gray)	medwcgB249
MELO3C010182.2	Watermelon (97103) v1	medwmB281
MELO3C010182.2	Watermelon (97103) v1	medwmB288
MELO3C010182.2	Silver-seed gourd	carmedB0135
MELO3C010182.2	Silver-seed gourd	carmedB0515
MELO3C010182.2	Silver-seed gourd	carmedB0907
MELO3C010182.2	Cucumber (Chinese Long) v3	cucmedB111
MELO3C010182.2	Watermelon (97103) v2	medwmbB222
MELO3C010182.2	Watermelon (97103) v2	medwmbB251
MELO3C010182.2	Wax gourd	medwgoB267
MELO3C010182.2	Wax gourd	medwgoB290