CsaV3_1G029370 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G029370
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr1 : 16177673 .. 16178733 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAACACATAACAAAACAAAACAAAAAACAAAGCATTTCATCTCTCAAATTCTGGTTCCCGTTAAAAAGTAGCCTCTTCAATTTTGGTTGAATCCCCTTAGCAATCAAACAAATATGGCTTCCATTAGGAGTGTTGCCGTTGTCACTTTTCTACTTGGCGTGTCCGTTATTGTATCAGAAAGCCGCGTGGCTAGAAAAGACTTGGGCCTCGACCTTGGGGGAGTGGGCCTTGGTGTTGGAACGGGAATGGGCTTGGGCTTAGGTGGAAGTGGGTCCGGGTCCGGTTCTGGGTCTGGGTCTGGGTCCAGTTCTGCTTCCTTATCACACTCCTCATACGCTGGCTCTTATGTCGGATCTGGTTCAGGCAGAAACAGGAACGGGGGGTCCGGTTCCGGTTCAGGAAGGGGAAACGGTGGAGAAGGATACGGCGAGGGTCATGGTTATGGCAATGGCGGCGAAAACTAAATCTTAAACTATAATTAGTGATAATATATGAAATTAATTAAGGATTATCATCGTCTTTTACTTTTGCAAATAGATGAACAAAAGCTATAGATAATGAATCCTTAATTGTATTTTCCTGCTTTGTTCTTTTAGTCTAGCTTTTATATATATACATATATGAAGTCCGAATAAAATGTTGTTCCTATTAAGTGTTAAATTAAACTATGGGTATCCATAATGGATTGAAAATGTATAATAACATTTTAAAAAATTTAAAATTATATTGTCGATGTTGTTAGGAGTATGTAAAAAAGAATTGTTAGTTCCATGAAAAAATACTATCCTGATTTGATTGTTCAATTAAGTGGATTCTTGACCGATAAATGGTTATTAAATATTGATATTAATATCATATGAAATTTCTATTTTAAGGATGTATGAAAAGATATATATGATAAAACATACCATCCAACTAATCTCATCACCCTCCTCTCGGCCACACCACGAAGGCAGTGAATCTGAAGCTGGTTCATATGCTGGTTGTACAAGGTGCAGTTCCGATAACCATTAAGCTCCTTAAGGCTCTGGCGGTTGTGAGAGACCTAACTGTTTTTGT

mRNA sequence

ATGGCTTCCATTAGGAGTGTTGCCGTTGTCACTTTTCTACTTGGCGTGTCCGTTATTGTATCAGAAAGCCGCGTGGCTAGAAAAGACTTGGGCCTCGACCTTGGGGGAGTGGGCCTTGGTGTTGGAACGGGAATGGGCTTGGGCTTAGGTGGAAGTGGGTCCGGGTCCGGTTCTGGGTCTGGGTCTGGGTCCAGTTCTGCTTCCTTATCACACTCCTCATACGCTGGCTCTTATGTCGGATCTGGTTCAGGCAGAAACAGGAACGGGGGGTCCGGTTCCGGTTCAGGAAGGGGAAACGGTGGAGAAGGATACGGCGAGGGTCATGGTTATGGCAATGGCGGCGAAAACTAA

Coding sequence (CDS)

ATGGCTTCCATTAGGAGTGTTGCCGTTGTCACTTTTCTACTTGGCGTGTCCGTTATTGTATCAGAAAGCCGCGTGGCTAGAAAAGACTTGGGCCTCGACCTTGGGGGAGTGGGCCTTGGTGTTGGAACGGGAATGGGCTTGGGCTTAGGTGGAAGTGGGTCCGGGTCCGGTTCTGGGTCTGGGTCTGGGTCCAGTTCTGCTTCCTTATCACACTCCTCATACGCTGGCTCTTATGTCGGATCTGGTTCAGGCAGAAACAGGAACGGGGGGTCCGGTTCCGGTTCAGGAAGGGGAAACGGTGGAGAAGGATACGGCGAGGGTCATGGTTATGGCAATGGCGGCGAAAACTAA

Protein sequence

MASIRSVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGMGLGLGGSGSGSGSGSGSGSSSASLSHSSYAGSYVGSGSGRNRNGGSGSGSGRGNGGEGYGEGHGYGNGGEN

Homology

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BLAST of CsaV3_1G029370 vs. NCBI nr
Match: XP_011656035.1 (PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis sativus] >KGN65266.1 hypothetical protein Csa_1G287000 [Cucumis sativus])

HSP 1 Score: 59.3 bits (142), Expect = 1.0e-05
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 0


Query: 1  MASIRSVAVVTFLLGVSVIVSESRVARKDLGLD 34
          MASIRSVAVVTFLLGVSVIVSESRVARKDLGLD
Sbjct: 1  MASIRSVAVVTFLLGVSVIVSESRVARKDLGLD 33

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BLAST of CsaV3_1G029370 vs. NCBI nr
Match: XP_008443812.1 (PREDICTED: putative glycine-rich cell wall structural protein 1 [Cucumis melo])

HSP 1 Score: 55.5 bits (132), Expect = 1.5e-04
Identity = 31/32 (96.88%), Postives = 31/32 (96.88%), Query Frame = 0


Query: 1  MASIRSVAVVTFLLGVSVIVSESRVARKDLGL 33
          MASIR VAVVTFLLGVSVIVSESRVARKDLGL
Sbjct: 1  MASIRGVAVVTFLLGVSVIVSESRVARKDLGL 32

[Close]

BLAST of CsaV3_1G029370 vs. TrEMBL
Match: tr|A0A0A0LZ57|A0A0A0LZ57_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G287000 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 6.6e-06
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 0


Query: 1  MASIRSVAVVTFLLGVSVIVSESRVARKDLGLD 34
          MASIRSVAVVTFLLGVSVIVSESRVARKDLGLD
Sbjct: 1  MASIRSVAVVTFLLGVSVIVSESRVARKDLGLD 33

[Close]

BLAST of CsaV3_1G029370 vs. TrEMBL
Match: tr|A0A1S3B8Y8|A0A1S3B8Y8_CUCME (putative glycine-rich cell wall structural protein 1 OS=Cucumis melo OX=3656 GN=LOC103487315 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 9.6e-05
Identity = 31/32 (96.88%), Postives = 31/32 (96.88%), Query Frame = 0


Query: 1  MASIRSVAVVTFLLGVSVIVSESRVARKDLGL 33
          MASIR VAVVTFLLGVSVIVSESRVARKDLGL
Sbjct: 1  MASIRGVAVVTFLLGVSVIVSESRVARKDLGL 32

The following BLAST results are available for this feature:

BLAST of CsaV3_1G029370 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011656035.1	1.0e-05	100.00	PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis sativus] >K...	[more]
XP_008443812.1	1.5e-04	96.88	PREDICTED: putative glycine-rich cell wall structural protein 1 [Cucumis melo]	[more]

BLAST of CsaV3_1G029370 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G029370 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G029370 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LZ57\|A0A0A0LZ57_CUCSA	6.6e-06	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G287000 PE=4 SV=1	[more]
tr\|A0A1S3B8Y8\|A0A1S3B8Y8_CUCME	9.6e-05	96.88	putative glycine-rich cell wall structural protein 1 OS=Cucumis melo OX=3656 GN=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G029370.1	CsaV3_1G029370.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..95
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..116
None	No IPR available	PANTHER	PTHR38934	FAMILY NOT NAMED	coord: 1..73
None	No IPR available	PANTHER	PTHR38934:SF5	GLYCINE-RICH PROTEIN	coord: 1..73

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G029370	CSPI01G18160	Wild cucumber (PI 183967)	cpicucB000
CsaV3_1G029370	MELO3C010182	Melon (DHL92) v3.5.1	cucmeB054
CsaV3_1G029370	MELO3C010182.2	Melon (DHL92) v3.6.1	cucmedB052

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G029370	Cucumber (Chinese Long) v3	cuccucB008
CsaV3_1G029370	Silver-seed gourd	carcucB0142
CsaV3_1G029370	Silver-seed gourd	carcucB0537
CsaV3_1G029370	Silver-seed gourd	carcucB0951
CsaV3_1G029370	Cucumber (Gy14) v2	cgybcucB001
CsaV3_1G029370	Cucumber (Gy14) v2	cgybcucB058
CsaV3_1G029370	Cucumber (Gy14) v1	cgycucB096
CsaV3_1G029370	Cucurbita maxima (Rimu)	cmacucB0067
CsaV3_1G029370	Cucurbita maxima (Rimu)	cmacucB0111
CsaV3_1G029370	Cucurbita maxima (Rimu)	cmacucB0191
CsaV3_1G029370	Cucurbita moschata (Rifu)	cmocucB0054
CsaV3_1G029370	Cucurbita moschata (Rifu)	cmocucB0100
CsaV3_1G029370	Cucurbita moschata (Rifu)	cmocucB0175
CsaV3_1G029370	Cucurbita pepo (Zucchini)	cpecucB0429
CsaV3_1G029370	Cucurbita pepo (Zucchini)	cpecucB0796
CsaV3_1G029370	Wild cucumber (PI 183967)	cpicucB072
CsaV3_1G029370	Bottle gourd (USVL1VR-Ls)	cuclsiB008
CsaV3_1G029370	Bottle gourd (USVL1VR-Ls)	cuclsiB074
CsaV3_1G029370	Melon (DHL92) v3.5.1	cucmeB081
CsaV3_1G029370	Melon (DHL92) v3.6.1	cucmedB075
CsaV3_1G029370	Watermelon (Charleston Gray)	cucwcgB013
CsaV3_1G029370	Watermelon (Charleston Gray)	cucwcgB074
CsaV3_1G029370	Watermelon (97103) v1	cucwmB089
CsaV3_1G029370	Watermelon (97103) v1	cucwmB091
CsaV3_1G029370	Watermelon (97103) v2	cucwmbB023
CsaV3_1G029370	Watermelon (97103) v2	cucwmbB063
CsaV3_1G029370	Wax gourd	cucwgoB006
CsaV3_1G029370	Wax gourd	cucwgoB104