MELO3C010128.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C010128.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionPentatricopeptide repeat-containing protein
Locationchr02 : 14225770 .. 14227515 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTTCATCGGAATTTCTCCCTCAGAGCCTCCATTTCACCAATCCATTATCGAAGCCAACAATTCCCCAATCACATTCAGATTCCATCCCCACTCGCAGATTTTCAAACAAAACCTACCTCAGAAATGTCACTTCTTCTGCTGAATCTAGACAACCCCATTTCCCTAATCTCGATAACAGAGATGCCCATTTGATGAAACTCCTTAACAGGTCCTGCAGAGCTGGGAAGCACAACGAGTCCCTCTATTTTCTCGAAAGCGTGGTGAGTAAAGGCTTCAAACCTGATGTTGTGCTCTGTACTAAACTCATTAAAGGGTTTTTTAATTCTAGAAATTTGAAGAAAGCTGTGAGGGTTATGGAGATTTTGGAAACTTATGGTGACCCTGATGTTTATTCTTACAATGCTATGATCAGTGGGTTTAGTAAAGCCAACCAAATTGATTCTGCAAACCAGGTGTTTGATAGAATGCGCAGCAGGGGTTTTTCTCCTGATATCGTTACTTACAATATAATGATTGGGAGTTTGTGTAGTAGGGGGAAGCTTGCGCTTGCTTTTGAAGTTATGGATGAGCTTTTGAAGGATGGGTGTAAGCCATCTGTGATTACTTACACAATTCTTATAGAAGCAACAATTCTTGAAGGTAGAATAAATGAAGCTCTTGAGCTGTTTGATGAGTTGCTGTCGAGGGGCCTCCGTCCTGACTTGTATACATACAATGCCATCATTCGAGGTATTTGCAAGGAAGGAATGGAGGATCGAGCCGTGGATTTTGTTCGAGATTTATCCGCTAGAGGGTGTAATCCAGATGTGGTATCATACAATATTCTGCTGCGTTCTTTTCTAAACAAAAGCAGGTGGGAAGATGGGGAGAAGCTTATGAAAGACATGGTTTTAAGTGGCTGTGAGCCAAATGTCGTTACTCACAGCATTTTAATTAGTTCGTTTTGTCGAGAAGGGAGAGTAAGGGAAGCCGTGAATGTGTTGGAGGTGATGAAGGAGAAAGGGTTAACCCCGGATGCATATAGCTATGATCCACTGATTTCTGCCTTCTGCAAAGAAGGGAGATTGGATTTAGCAATTGAGTATTTGGACAAAATGGTTTCTGATGGTTGTTTGCCTGATATTGTAAACTACAATACAATTTTAGCTACACTTTGTAAATTCGGTTGTGCTGATCTTGCTTTAGACATCTTTGAGAAGCTGGATGAAGTGGGTTGCCCTCCAAATGTGAGTTCCTACAACACAATGTTCAGTGCACTTTGGAGCTGTGGGAACAAGATCAAGGCTCTGGAGATGATATCAGAAATGATAAGAAAAGGAATTGATCCCGATGAGATAACATACAATTCTCTGATCTCGTGCTTGTGTCGGGACGGGTTGGTTGACGAGGCTATTGGATTGTTGGTAGACATGGAAGCTACCAGCTTCCAGCCGACAGTGATCAGCTTCAACATTGTGCTTCTGGGGATGTGTAAAGCACACAGGGTTTTTGAAGGCATTGAGTTACTAATAACAATGGTTGAAAAAGGTTGCCCACCGAATGAAACTAGTTATGTCTTGTTAATCGAGGGGATTGCTTATGCCGGTTGGCGAGCAGAGGCTATGGAGTTGGCCAACTCTCTGTACAGATTGGGAGTTATTTCTGAAGATTCTTCCAAGCGTTTGAACAAGACATTTCCAATGCTTGACGTTTATAAAGGGCTAAGCTTATCAGAAAGCAAGAACCAACTCTTGCAAAGCTGA

mRNA sequence

ATGTTTTCATCGGAATTTCTCCCTCAGAGCCTCCATTTCACCAATCCATTATCGAAGCCAACAATTCCCCAATCACATTCAGATTCCATCCCCACTCGCAGATTTTCAAACAAAACCTACCTCAGAAATGTCACTTCTTCTGCTGAATCTAGACAACCCCATTTCCCTAATCTCGATAACAGAGATGCCCATTTGATGAAACTCCTTAACAGGTCCTGCAGAGCTGGGAAGCACAACGAGTCCCTCTATTTTCTCGAAAGCGTGGTGAGTAAAGGCTTCAAACCTGATGTTGTGCTCTGTACTAAACTCATTAAAGGGTTTTTTAATTCTAGAAATTTGAAGAAAGCTGTGAGGGTTATGGAGATTTTGGAAACTTATGGTGACCCTGATGTTTATTCTTACAATGCTATGATCAGTGGGTTTAGTAAAGCCAACCAAATTGATTCTGCAAACCAGGTGTTTGATAGAATGCGCAGCAGGGGTTTTTCTCCTGATATCGTTACTTACAATATAATGATTGGGAGTTTGTGTAGTAGGGGGAAGCTTGCGCTTGCTTTTGAAGTTATGGATGAGCTTTTGAAGGATGGGTGTAAGCCATCTGTGATTACTTACACAATTCTTATAGAAGCAACAATTCTTGAAGGTAGAATAAATGAAGCTCTTGAGCTGTTTGATGAGTTGCTGTCGAGGGGCCTCCGTCCTGACTTGTATACATACAATGCCATCATTCGAGGTATTTGCAAGGAAGGAATGGAGGATCGAGCCGTGGATTTTGTTCGAGATTTATCCGCTAGAGGGTGTAATCCAGATGTGGTATCATACAATATTCTGCTGCGTTCTTTTCTAAACAAAAGCAGGTGGGAAGATGGGGAGAAGCTTATGAAAGACATGGTTTTAAGTGGCTGTGAGCCAAATGTCGTTACTCACAGCATTTTAATTAGTTCGTTTTGTCGAGAAGGGAGAGTAAGGGAAGCCGTGAATGTGTTGGAGGTGATGAAGGAGAAAGGGTTAACCCCGGATGCATATAGCTATGATCCACTGATTTCTGCCTTCTGCAAAGAAGGGAGATTGGATTTAGCAATTGAGTATTTGGACAAAATGGTTTCTGATGGTTGTTTGCCTGATATTGTAAACTACAATACAATTTTAGCTACACTTTGTAAATTCGGTTGTGCTGATCTTGCTTTAGACATCTTTGAGAAGCTGGATGAAGTGGGTTGCCCTCCAAATGTGAGTTCCTACAACACAATGTTCAGTGCACTTTGGAGCTGTGGGAACAAGATCAAGGCTCTGGAGATGATATCAGAAATGATAAGAAAAGGAATTGATCCCGATGAGATAACATACAATTCTCTGATCTCGTGCTTGTGTCGGGACGGGTTGGTTGACGAGGCTATTGGATTGTTGGTAGACATGGAAGCTACCAGCTTCCAGCCGACAGTGATCAGCTTCAACATTGTGCTTCTGGGGATGTGTAAAGCACACAGGGTTTTTGAAGGCATTGAGTTACTAATAACAATGGTTGAAAAAGGTTGCCCACCGAATGAAACTAGTTATGTCTTGTTAATCGAGGGGATTGCTTATGCCGGTTGGCGAGCAGAGGCTATGGAGTTGGCCAACTCTCTGTACAGATTGGGAGTTATTTCTGAAGATTCTTCCAAGCGTTTGAACAAGACATTTCCAATGCTTGACGTTTATAAAGGGCTAAGCTTATCAGAAAGCAAGAACCAACTCTTGCAAAGCTGA

Coding sequence (CDS)

ATGTTTTCATCGGAATTTCTCCCTCAGAGCCTCCATTTCACCAATCCATTATCGAAGCCAACAATTCCCCAATCACATTCAGATTCCATCCCCACTCGCAGATTTTCAAACAAAACCTACCTCAGAAATGTCACTTCTTCTGCTGAATCTAGACAACCCCATTTCCCTAATCTCGATAACAGAGATGCCCATTTGATGAAACTCCTTAACAGGTCCTGCAGAGCTGGGAAGCACAACGAGTCCCTCTATTTTCTCGAAAGCGTGGTGAGTAAAGGCTTCAAACCTGATGTTGTGCTCTGTACTAAACTCATTAAAGGGTTTTTTAATTCTAGAAATTTGAAGAAAGCTGTGAGGGTTATGGAGATTTTGGAAACTTATGGTGACCCTGATGTTTATTCTTACAATGCTATGATCAGTGGGTTTAGTAAAGCCAACCAAATTGATTCTGCAAACCAGGTGTTTGATAGAATGCGCAGCAGGGGTTTTTCTCCTGATATCGTTACTTACAATATAATGATTGGGAGTTTGTGTAGTAGGGGGAAGCTTGCGCTTGCTTTTGAAGTTATGGATGAGCTTTTGAAGGATGGGTGTAAGCCATCTGTGATTACTTACACAATTCTTATAGAAGCAACAATTCTTGAAGGTAGAATAAATGAAGCTCTTGAGCTGTTTGATGAGTTGCTGTCGAGGGGCCTCCGTCCTGACTTGTATACATACAATGCCATCATTCGAGGTATTTGCAAGGAAGGAATGGAGGATCGAGCCGTGGATTTTGTTCGAGATTTATCCGCTAGAGGGTGTAATCCAGATGTGGTATCATACAATATTCTGCTGCGTTCTTTTCTAAACAAAAGCAGGTGGGAAGATGGGGAGAAGCTTATGAAAGACATGGTTTTAAGTGGCTGTGAGCCAAATGTCGTTACTCACAGCATTTTAATTAGTTCGTTTTGTCGAGAAGGGAGAGTAAGGGAAGCCGTGAATGTGTTGGAGGTGATGAAGGAGAAAGGGTTAACCCCGGATGCATATAGCTATGATCCACTGATTTCTGCCTTCTGCAAAGAAGGGAGATTGGATTTAGCAATTGAGTATTTGGACAAAATGGTTTCTGATGGTTGTTTGCCTGATATTGTAAACTACAATACAATTTTAGCTACACTTTGTAAATTCGGTTGTGCTGATCTTGCTTTAGACATCTTTGAGAAGCTGGATGAAGTGGGTTGCCCTCCAAATGTGAGTTCCTACAACACAATGTTCAGTGCACTTTGGAGCTGTGGGAACAAGATCAAGGCTCTGGAGATGATATCAGAAATGATAAGAAAAGGAATTGATCCCGATGAGATAACATACAATTCTCTGATCTCGTGCTTGTGTCGGGACGGGTTGGTTGACGAGGCTATTGGATTGTTGGTAGACATGGAAGCTACCAGCTTCCAGCCGACAGTGATCAGCTTCAACATTGTGCTTCTGGGGATGTGTAAAGCACACAGGGTTTTTGAAGGCATTGAGTTACTAATAACAATGGTTGAAAAAGGTTGCCCACCGAATGAAACTAGTTATGTCTTGTTAATCGAGGGGATTGCTTATGCCGGTTGGCGAGCAGAGGCTATGGAGTTGGCCAACTCTCTGTACAGATTGGGAGTTATTTCTGAAGATTCTTCCAAGCGTTTGAACAAGACATTTCCAATGCTTGACGTTTATAAAGGGCTAAGCTTATCAGAAAGCAAGAACCAACTCTTGCAAAGCTGA

Protein sequence

MFSSEFLPQSLHFTNPLSKPTIPQSHSDSIPTRRFSNKTYLRNVTSSAESRQPHFPNLDNRDAHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAVRVMEILETYGDPDVYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPDIVTYNIMIGSLCSRGKLALAFEVMDELLKDGCKPSVITYTILIEATILEGRINEALELFDELLSRGLRPDLYTYNAIIRGICKEGMEDRAVDFVRDLSARGCNPDVVSYNILLRSFLNKSRWEDGEKLMKDMVLSGCEPNVVTHSILISSFCREGRVREAVNVLEVMKEKGLTPDAYSYDPLISAFCKEGRLDLAIEYLDKMVSDGCLPDIVNYNTILATLCKFGCADLALDIFEKLDEVGCPPNVSSYNTMFSALWSCGNKIKALEMISEMIRKGIDPDEITYNSLISCLCRDGLVDEAIGLLVDMEATSFQPTVISFNIVLLGMCKAHRVFEGIELLITMVEKGCPPNETSYVLLIEGIAYAGWRAEAMELANSLYRLGVISEDSSKRLNKTFPMLDVYKGLSLSESKNQLLQS
Homology
[Close]
BLAST of MELO3C010128.2 vs. NCBI nr
Match: XP_008443759.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic [Cucumis melo])

HSP 1 Score: 327.4 bits (838), Expect = 9.8e-86
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0 

Query: 1   MFSSEFLPQSLHFTNPLSKPTIPQSHSDSIPTRRFSNKTYLRNVTSSAESRQPHFPNLDN 60
           MFSSEFLPQSLHFTNPLSKPTIPQSHSDSIPTRRFSNKTYLRNVTSSAESRQPHFPNLDN
Sbjct: 1   MFSSEFLPQSLHFTNPLSKPTIPQSHSDSIPTRRFSNKTYLRNVTSSAESRQPHFPNLDN 60

Query: 61  RDAHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAVRVM 120
           RDAHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAVRVM
Sbjct: 61  RDAHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAVRVM 120

Query: 121 EILETYGDPDVYSYNAMISGFSKANQIDSANQVFDRMRSRGF 163
           EILETYGDPDVYSYNAMISGFSKANQIDSANQVFDRMRSRGF
Sbjct: 121 EILETYGDPDVYSYNAMISGFSKANQIDSANQVFDRMRSRGF 162

[Close]
BLAST of MELO3C010128.2 vs. NCBI nr
Match: XP_004142590.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic [Cucumis sativus] >KGN66736.1 hypothetical protein Csa_1G666460 [Cucumis sativus])

HSP 1 Score: 312.8 bits (800), Expect = 2.5e-81
Identity = 155/162 (95.68%), Postives = 158/162 (97.53%), Query Frame = 0 

Query: 1   MFSSEFLPQSLHFTNPLSKPTIPQSHSDSIPTRRFSNKTYLRNVTSSAESRQPHFPNLDN 60
           MFSSEFLPQSLHFTNPL+KPTIPQS SDSIP  RFSNKT+LRNVTSSAE RQPHFPNLDN
Sbjct: 1   MFSSEFLPQSLHFTNPLAKPTIPQSRSDSIPACRFSNKTHLRNVTSSAEFRQPHFPNLDN 60

Query: 61  RDAHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAVRVM 120
           RDAHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKA+RVM
Sbjct: 61  RDAHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVM 120

Query: 121 EILETYGDPDVYSYNAMISGFSKANQIDSANQVFDRMRSRGF 163
           EILETYGDPDVYSYNAMISGFSKANQIDSANQVFDRMRSRGF
Sbjct: 121 EILETYGDPDVYSYNAMISGFSKANQIDSANQVFDRMRSRGF 162

[Close]
BLAST of MELO3C010128.2 vs. NCBI nr
Match: XP_023515375.1 (pentatricopeptide repeat-containing protein At3g04760, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 280.0 bits (715), Expect = 1.8e-71
Identity = 141/162 (87.04%), Postives = 148/162 (91.36%), Query Frame = 0 

Query: 1   MFSSEFLPQSLHFTNPLSKPTIPQSHSDSIPTRRFSNKTYLRNVTSSAESRQPHFPNLDN 60
           MFSSE L QSLHF NPLS PTIPQSHS S  TRRF NKT+LRN  SSAE+R+PH P LDN
Sbjct: 1   MFSSELLSQSLHFINPLSNPTIPQSHSSSF-TRRFPNKTHLRNGASSAETREPHDPILDN 60

Query: 61  RDAHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAVRVM 120
           R+ HLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKA+RVM
Sbjct: 61  RETHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVM 120

Query: 121 EILETYGDPDVYSYNAMISGFSKANQIDSANQVFDRMRSRGF 163
           EILETYGDPDVYSYNAMISGFSKANQI+SAN+VFDRMR RGF
Sbjct: 121 EILETYGDPDVYSYNAMISGFSKANQIESANEVFDRMRRRGF 161

[Close]
BLAST of MELO3C010128.2 vs. NCBI nr
Match: XP_022960811.1 (pentatricopeptide repeat-containing protein At3g04760, chloroplastic [Cucurbita moschata])

HSP 1 Score: 279.6 bits (714), Expect = 2.3e-71
Identity = 141/162 (87.04%), Postives = 148/162 (91.36%), Query Frame = 0 

Query: 1   MFSSEFLPQSLHFTNPLSKPTIPQSHSDSIPTRRFSNKTYLRNVTSSAESRQPHFPNLDN 60
           MFSSE L QSLHF NPLS PTIPQSHS S  TRRF NKT+LRN  SSAE+R+PH P LDN
Sbjct: 1   MFSSELLSQSLHFINPLSNPTIPQSHSSSF-TRRFPNKTHLRNGASSAETREPHDPILDN 60

Query: 61  RDAHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAVRVM 120
           R+ HLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKA+RVM
Sbjct: 61  RETHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVM 120

Query: 121 EILETYGDPDVYSYNAMISGFSKANQIDSANQVFDRMRSRGF 163
           EILETYGDPDVYSYNAMISGFSKANQI+SAN+VFDRMR RGF
Sbjct: 121 EILETYGDPDVYSYNAMISGFSKANQIESANKVFDRMRRRGF 161

[Close]
BLAST of MELO3C010128.2 vs. NCBI nr
Match: XP_022988060.1 (pentatricopeptide repeat-containing protein At3g04760, chloroplastic [Cucurbita maxima])

HSP 1 Score: 277.3 bits (708), Expect = 1.2e-70
Identity = 140/162 (86.42%), Postives = 147/162 (90.74%), Query Frame = 0 

Query: 1   MFSSEFLPQSLHFTNPLSKPTIPQSHSDSIPTRRFSNKTYLRNVTSSAESRQPHFPNLDN 60
           MFSSE L QSLHF NPLS PTIPQSHS S  TRRF NKT+LRN  SSAE+R+PH P LDN
Sbjct: 1   MFSSELLSQSLHFINPLSNPTIPQSHSSSF-TRRFPNKTHLRNGASSAETREPHDPILDN 60

Query: 61  RDAHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAVRVM 120
           R+ HLMKLLNRSCRAGKHNESLYFLESVVSKG KPDVVLCTKLIKGFFNSRNLKKA+RVM
Sbjct: 61  RETHLMKLLNRSCRAGKHNESLYFLESVVSKGLKPDVVLCTKLIKGFFNSRNLKKAMRVM 120

Query: 121 EILETYGDPDVYSYNAMISGFSKANQIDSANQVFDRMRSRGF 163
           EILETYGDPDVYSYNAMISGFSKANQI+SAN+VFDRMR RGF
Sbjct: 121 EILETYGDPDVYSYNAMISGFSKANQIESANKVFDRMRRRGF 161

[Close]
BLAST of MELO3C010128.2 vs. TAIR10
Match: AT3G04760.1 (Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 99.4 bits (246), Expect = 7.9e-21
Identity = 47/82 (57.32%), Postives = 61/82 (74.39%), Query Frame = 0 

Query: 43  NVTSSAESRQPHFPNLDNRDAHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTK 102
           + T   E RQ H  +L  RD  ++K+ +RSCR+G + ESL+ LE++V KG+ PDV+LCTK
Sbjct: 70  DATLPTERRQQHSQSLGFRDTQMLKIFHRSCRSGNYIESLHLLETMVRKGYNPDVILCTK 129

Query: 103 LIKGFFNSRNLKKAVRVMEILE 125
           LIKGFF  RN+ KAVRVMEILE
Sbjct: 130 LIKGFFTLRNIPKAVRVMEILE 151

[Close]
BLAST of MELO3C010128.2 vs. TAIR10
Match: AT2G39620.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 52.0 bits (123), Expect = 1.4e-06
Identity = 31/86 (36.05%), Postives = 46/86 (53.49%), Query Frame = 0 

Query: 74  RAGKHNESL-YFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAVRVMEILETYG-DPDV 133
           RAG H E+L +F      KG  PD    T  +K    S + KK +R+ +++   G + DV
Sbjct: 76  RAGLHREALGFFGYMSEEKGIDPDKYSFTFALKACAGSMDFKKGLRIHDLIAEMGLESDV 135

Query: 134 YSYNAMISGFSKANQIDSANQVFDRM 158
           Y   A++  + KA  + SA QVFD+M
Sbjct: 136 YIGTALVEMYCKARDLVSARQVFDKM 161

[Close]
BLAST of MELO3C010128.2 vs. TAIR10
Match: AT3G22670.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 50.4 bits (119), Expect = 4.2e-06
Identity = 28/95 (29.47%), Postives = 48/95 (50.53%), Query Frame = 0 

Query: 65  LMKLLNRSCRAGKHNESL-YFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAVRVMEIL 124
           + K++ R  ++GK+N+++  FLE   S G K D +    L+       +++ A  V   L
Sbjct: 206 MSKVMRRLAKSGKYNKAVDAFLEMEKSYGVKTDTIAMNSLMDALVKENSIEHAHEVFLKL 265

Query: 125 ETYGDPDVYSYNAMISGFSKANQIDSANQVFDRMR 159
                PD  ++N +I GF KA + D A  + D M+
Sbjct: 266 FDTIKPDARTFNILIHGFCKARKFDDARAMMDLMK 300

[Close]
BLAST of MELO3C010128.2 vs. TAIR10
Match: AT1G20300.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 46.2 bits (108), Expect = 7.9e-05
Identity = 24/91 (26.37%), Postives = 44/91 (48.35%), Query Frame = 0 

Query: 68  LLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAVRVMEILETYG 127
           L+ R  RAG  +E+++    +   G  PD +  + +I      R   +A    + L+   
Sbjct: 192 LIRRYVRAGLASEAVHCFNRMEDYGCVPDKIAFSIVISNLSRKRRASEAQSFFDSLKDRF 251

Query: 128 DPDVYSYNAMISGFSKANQIDSANQVFDRMR 159
           +PDV  Y  ++ G+ +A +I  A +VF  M+
Sbjct: 252 EPDVIVYTNLVRGWCRAGEISEAEKVFKEMK 282

[Close]
BLAST of MELO3C010128.2 vs. TAIR10
Match: AT2G01740.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 44.7 bits (104), Expect = 2.3e-04
Identity = 29/110 (26.36%), Postives = 55/110 (50.00%), Query Frame = 0 

Query: 51  RQPHFPNLDNRDAHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNS 110
           +  + P+    + H+ +L+N +C       SL FL  +VS+G+ P       ++      
Sbjct: 14  KSSNLPDPFTCNKHIHQLINSNCGI----LSLKFLAYLVSRGYTPHRSSFNSVVSFVCKL 73

Query: 111 RNLKKAVRVMEILETYG-DPDVYSYNAMISGFSKANQIDSANQVFDRMRS 160
             +K A  ++  +  +G +PDV SYN++I G  +   I SA+ V + +R+
Sbjct: 74  GQVKFAEDIVHSMPRFGCEPDVISYNSLIDGHCRNGDIRSASLVLESLRA 119

[Close]
BLAST of MELO3C010128.2 vs. Swiss-Prot
Match: sp|Q9SR00|PP213_ARATH (Pentatricopeptide repeat-containing protein At3g04760, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g04760 PE=2 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.4e-19
Identity = 47/82 (57.32%), Postives = 61/82 (74.39%), Query Frame = 0 

Query: 43  NVTSSAESRQPHFPNLDNRDAHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTK 102
           + T   E RQ H  +L  RD  ++K+ +RSCR+G + ESL+ LE++V KG+ PDV+LCTK
Sbjct: 70  DATLPTERRQQHSQSLGFRDTQMLKIFHRSCRSGNYIESLHLLETMVRKGYNPDVILCTK 129

Query: 103 LIKGFFNSRNLKKAVRVMEILE 125
           LIKGFF  RN+ KAVRVMEILE
Sbjct: 130 LIKGFFTLRNIPKAVRVMEILE 151

[Close]
BLAST of MELO3C010128.2 vs. Swiss-Prot
Match: sp|O80647|PP195_ARATH (Pentatricopeptide repeat-containing protein At2g39620 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E33 PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 2.6e-05
Identity = 31/86 (36.05%), Postives = 46/86 (53.49%), Query Frame = 0 

Query: 74  RAGKHNESL-YFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAVRVMEILETYG-DPDV 133
           RAG H E+L +F      KG  PD    T  +K    S + KK +R+ +++   G + DV
Sbjct: 76  RAGLHREALGFFGYMSEEKGIDPDKYSFTFALKACAGSMDFKKGLRIHDLIAEMGLESDV 135

Query: 134 YSYNAMISGFSKANQIDSANQVFDRM 158
           Y   A++  + KA  + SA QVFD+M
Sbjct: 136 YIGTALVEMYCKARDLVSARQVFDKM 161

[Close]
BLAST of MELO3C010128.2 vs. Swiss-Prot
Match: sp|Q9LUJ4|PP248_ARATH (Pentatricopeptide repeat-containing protein At3g22670, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g22670 PE=2 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 7.6e-05
Identity = 28/95 (29.47%), Postives = 48/95 (50.53%), Query Frame = 0 

Query: 65  LMKLLNRSCRAGKHNESL-YFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAVRVMEIL 124
           + K++ R  ++GK+N+++  FLE   S G K D +    L+       +++ A  V   L
Sbjct: 206 MSKVMRRLAKSGKYNKAVDAFLEMEKSYGVKTDTIAMNSLMDALVKENSIEHAHEVFLKL 265

Query: 125 ETYGDPDVYSYNAMISGFSKANQIDSANQVFDRMR 159
                PD  ++N +I GF KA + D A  + D M+
Sbjct: 266 FDTIKPDARTFNILIHGFCKARKFDDARAMMDLMK 300

[Close]
BLAST of MELO3C010128.2 vs. TrEMBL
Match: tr|A0A1S3B9K3|A0A1S3B9K3_CUCME (pentatricopeptide repeat-containing protein At3g04760, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103487275 PE=4 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 6.5e-86
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0 

Query: 1   MFSSEFLPQSLHFTNPLSKPTIPQSHSDSIPTRRFSNKTYLRNVTSSAESRQPHFPNLDN 60
           MFSSEFLPQSLHFTNPLSKPTIPQSHSDSIPTRRFSNKTYLRNVTSSAESRQPHFPNLDN
Sbjct: 1   MFSSEFLPQSLHFTNPLSKPTIPQSHSDSIPTRRFSNKTYLRNVTSSAESRQPHFPNLDN 60

Query: 61  RDAHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAVRVM 120
           RDAHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAVRVM
Sbjct: 61  RDAHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAVRVM 120

Query: 121 EILETYGDPDVYSYNAMISGFSKANQIDSANQVFDRMRSRGF 163
           EILETYGDPDVYSYNAMISGFSKANQIDSANQVFDRMRSRGF
Sbjct: 121 EILETYGDPDVYSYNAMISGFSKANQIDSANQVFDRMRSRGF 162

[Close]
BLAST of MELO3C010128.2 vs. TrEMBL
Match: tr|A0A0A0M3C6|A0A0A0M3C6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G666460 PE=4 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 1.7e-81
Identity = 155/162 (95.68%), Postives = 158/162 (97.53%), Query Frame = 0 

Query: 1   MFSSEFLPQSLHFTNPLSKPTIPQSHSDSIPTRRFSNKTYLRNVTSSAESRQPHFPNLDN 60
           MFSSEFLPQSLHFTNPL+KPTIPQS SDSIP  RFSNKT+LRNVTSSAE RQPHFPNLDN
Sbjct: 1   MFSSEFLPQSLHFTNPLAKPTIPQSRSDSIPACRFSNKTHLRNVTSSAEFRQPHFPNLDN 60

Query: 61  RDAHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAVRVM 120
           RDAHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKA+RVM
Sbjct: 61  RDAHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVM 120

Query: 121 EILETYGDPDVYSYNAMISGFSKANQIDSANQVFDRMRSRGF 163
           EILETYGDPDVYSYNAMISGFSKANQIDSANQVFDRMRSRGF
Sbjct: 121 EILETYGDPDVYSYNAMISGFSKANQIDSANQVFDRMRSRGF 162

[Close]
BLAST of MELO3C010128.2 vs. TrEMBL
Match: tr|A0A2P5C367|A0A2P5C367_PARAD (Tetratricopeptide-like helical domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_188020 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.3e-41
Identity = 93/172 (54.07%), Postives = 128/172 (74.42%), Query Frame = 0 

Query: 1   MFSSEFLPQSLHFT-NPLSKPTIPQSHSDSI---------PTRRFSNKTYLRNVTSSAES 60
           + S+EFLPQSL  T +P  KPT  + H  ++          ++ FS K +   V  S ++
Sbjct: 3   IISTEFLPQSLAITVHP--KPTSQKLHHSTVVSCRVPSFSESKNFSRKPFDSRV--SVDT 62

Query: 61  RQPHFPNLDNRDAHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNS 120
           R PH    D ++ HL+K LNRSC+AGK+NE+LYFL+ ++SKGFKPDV+LCTK+++GFF S
Sbjct: 63  RAPHLHRNDYKENHLLKALNRSCKAGKYNEALYFLQLMISKGFKPDVILCTKVMRGFFYS 122

Query: 121 RNLKKAVRVMEILETYGDPDVYSYNAMISGFSKANQIDSANQVFDRMRSRGF 163
           RN++KA+RVMEILE +G+PD++SYNAMISGF KAN+I+ ANQV DRMR++GF
Sbjct: 123 RNVQKAIRVMEILEKHGEPDLFSYNAMISGFCKANRIELANQVLDRMRAQGF 170

[Close]
BLAST of MELO3C010128.2 vs. TrEMBL
Match: tr|A0A061F8R7|A0A061F8R7_THECC (Pentatricopeptide repeat (PPR-like) superfamily protein OS=Theobroma cacao OX=3641 GN=TCM_026185 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 1.7e-41
Identity = 94/170 (55.29%), Postives = 120/170 (70.59%), Query Frame = 0 

Query: 1   MFSSEFLPQSLHFTNPLSKPTI-PQSHSDSIPT-------RRFSNKTYLRNVTSSAESRQ 60
           +FS+E +  SL FT    KPT    SH  S+ +          S     + V  SAE+R 
Sbjct: 3   LFSTELVTHSLPFTTQQLKPTSNSHSHHTSLVSCLNHESQDSSSKSRNNQKVRVSAETRP 62

Query: 61  PHFPNLDNRDAHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRN 120
            H  + D ++ HLMKLLNRSC+AGK+NE+ YFLE +V KG+KPDVVLCTK+IKGFFN RN
Sbjct: 63  THLLSFDFKETHLMKLLNRSCKAGKYNEAFYFLECMVGKGYKPDVVLCTKMIKGFFNGRN 122

Query: 121 LKKAVRVMEILETYGDPDVYSYNAMISGFSKANQIDSANQVFDRMRSRGF 163
           ++KA RV+EILE YG+PDV++YNA+ISGF K N++D AN+V DRMRSRGF
Sbjct: 123 VEKATRVIEILEKYGEPDVFAYNAIISGFCKMNRLDFANKVLDRMRSRGF 172

[Close]
BLAST of MELO3C010128.2 vs. TrEMBL
Match: tr|A0A2P5C0H0|A0A2P5C0H0_9ROSA (Tetratricopeptide-like helical domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_302290 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 3.7e-41
Identity = 92/172 (53.49%), Postives = 128/172 (74.42%), Query Frame = 0 

Query: 1   MFSSEFLPQSLHFT-NPLSKPTIPQSHSDSI---------PTRRFSNKTYLRNVTSSAES 60
           + S+EFLPQSL  T +P  KPT  + H  ++          ++ FS + +  N   S ++
Sbjct: 3   IISTEFLPQSLPITVHP--KPTSQKLHHSTVVSCRVPSFSESKNFSRRPF--NSRVSVDT 62

Query: 61  RQPHFPNLDNRDAHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNS 120
           R PH    D R+ HL+K LNRSC+AGK+NE+LYFL+ ++SKGFKPDV+LCTK++KGFF S
Sbjct: 63  RAPHLHRNDYRENHLLKALNRSCKAGKYNEALYFLQLMISKGFKPDVILCTKVMKGFFYS 122

Query: 121 RNLKKAVRVMEILETYGDPDVYSYNAMISGFSKANQIDSANQVFDRMRSRGF 163
           R+++KA+RVMEILE +G+PD++SYNAMISGF KAN+I+ AN+V DRMR++GF
Sbjct: 123 RDVQKAIRVMEILEKHGEPDLFSYNAMISGFCKANRIELANKVLDRMRAQGF 170

The following BLAST results are available for this feature:
BLAST of MELO3C010128.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008443759.19.8e-86100.00PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic ... [more]
XP_004142590.12.5e-8195.68PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic ... [more]
XP_023515375.11.8e-7187.04pentatricopeptide repeat-containing protein At3g04760, chloroplastic [Cucurbita ... [more]
XP_022960811.12.3e-7187.04pentatricopeptide repeat-containing protein At3g04760, chloroplastic [Cucurbita ... [more]
XP_022988060.11.2e-7086.42pentatricopeptide repeat-containing protein At3g04760, chloroplastic [Cucurbita ... [more]
BLAST of MELO3C010128.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G04760.17.9e-2157.32Pentatricopeptide repeat (PPR-like) superfamily protein[more]
AT2G39620.11.4e-0636.05Pentatricopeptide repeat (PPR) superfamily protein[more]
AT3G22670.14.2e-0629.47Pentatricopeptide repeat (PPR) superfamily protein[more]
AT1G20300.17.9e-0526.37Pentatricopeptide repeat (PPR) superfamily protein[more]
AT2G01740.12.3e-0426.36Tetratricopeptide repeat (TPR)-like superfamily protein[more]
BLAST of MELO3C010128.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9SR00|PP213_ARATH1.4e-1957.32Pentatricopeptide repeat-containing protein At3g04760, chloroplastic OS=Arabidop... [more]
sp|O80647|PP195_ARATH2.6e-0536.05Pentatricopeptide repeat-containing protein At2g39620 OS=Arabidopsis thaliana OX... [more]
sp|Q9LUJ4|PP248_ARATH7.6e-0529.47Pentatricopeptide repeat-containing protein At3g22670, mitochondrial OS=Arabidop... [more]
BLAST of MELO3C010128.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3B9K3|A0A1S3B9K3_CUCME6.5e-86100.00pentatricopeptide repeat-containing protein At3g04760, chloroplastic OS=Cucumis ... [more]
tr|A0A0A0M3C6|A0A0A0M3C6_CUCSA1.7e-8195.68Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G666460 PE=4 SV=1[more]
tr|A0A2P5C367|A0A2P5C367_PARAD1.3e-4154.07Tetratricopeptide-like helical domain containing protein OS=Parasponia andersoni... [more]
tr|A0A061F8R7|A0A061F8R7_THECC1.7e-4155.29Pentatricopeptide repeat (PPR-like) superfamily protein OS=Theobroma cacao OX=36... [more]
tr|A0A2P5C0H0|A0A2P5C0H0_9ROSA3.7e-4153.49Tetratricopeptide-like helical domain containing protein OS=Trema orientalis OX=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0009507 chloroplast
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C010128.2.1MELO3C010128.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 85..122
e-value: 1.8E-5
score: 24.6
coord: 179..210
e-value: 5.6E-5
score: 23.0
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 237..271
e-value: 1.0E-7
score: 29.6
coord: 342..376
e-value: 1.9E-9
score: 35.1
coord: 202..235
e-value: 1.2E-6
score: 26.3
coord: 379..411
e-value: 2.1E-5
score: 22.4
coord: 132..166
e-value: 6.2E-11
score: 39.8
coord: 272..306
e-value: 3.5E-8
score: 31.1
coord: 167..201
e-value: 9.4E-9
score: 32.9
coord: 307..341
e-value: 6.0E-9
score: 33.5
coord: 447..480
e-value: 2.0E-8
score: 31.9
coord: 482..516
e-value: 5.4E-5
score: 21.1
coord: 413..446
e-value: 2.6E-4
score: 18.9
IPR002885Pentatricopeptide repeatPFAMPF12854PPR_1coord: 440..473
e-value: 1.8E-13
score: 49.8
coord: 335..368
e-value: 7.5E-10
score: 38.3
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 479..526
e-value: 1.7E-8
score: 34.4
coord: 269..318
e-value: 2.5E-15
score: 56.3
coord: 214..248
e-value: 5.6E-9
score: 35.9
coord: 129..178
e-value: 1.7E-18
score: 66.4
coord: 374..421
e-value: 5.5E-11
score: 42.4
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 130..164
score: 13.943
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 375..409
score: 11.126
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 340..374
score: 12.88
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 61..95
score: 7.278
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 480..514
score: 10.227
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 410..444
score: 11.181
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 305..339
score: 13.208
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 235..269
score: 12.047
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 515..549
score: 6.982
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 200..234
score: 11.641
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 445..479
score: 12.562
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 96..126
score: 6.555
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 165..199
score: 12.781
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 270..304
score: 11.926
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 284..402
e-value: 1.6E-35
score: 125.1
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 49..179
e-value: 3.2E-31
score: 110.1
coord: 180..283
e-value: 5.0E-31
score: 109.4
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 403..473
e-value: 9.9E-19
score: 69.5
coord: 474..544
e-value: 1.1E-10
score: 43.3
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 10..542
NoneNo IPR availablePANTHERPTHR24015:SF572SUBFAMILY NOT NAMEDcoord: 10..542
NoneNo IPR availableSUPERFAMILYSSF81901HCP-likecoord: 339..449
coord: 107..232

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C010128.2Csa1G665940Cucumber (Chinese Long) v2cumedB035
MELO3C010128.2CSPI01G32970Wild cucumber (PI 183967)cpimedB038
MELO3C010128.2Cucsa.027550Cucumber (Gy14) v1cgymedB646
MELO3C010128.2CmoCh10G010810Cucurbita moschata (Rifu)cmomedB068
MELO3C010128.2Lsi06G007720Bottle gourd (USVL1VR-Ls)lsimedB420
MELO3C010128.2CsGy1G031790Cucumber (Gy14) v2cgybmedB034
MELO3C010128.2Cla003500Watermelon (97103) v1medwmB261
MELO3C010128.2Bhi02G001054Wax gourdmedwgoB310
MELO3C010128.2CsaV3_1G045110Cucumber (Chinese Long) v3cucmedB041
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C010128.2Watermelon (97103) v2medwmbB229
MELO3C010128.2Cucurbita maxima (Rimu)cmamedB075
MELO3C010128.2Cucurbita maxima (Rimu)cmamedB114
MELO3C010128.2Cucurbita moschata (Rifu)cmomedB107
MELO3C010128.2Watermelon (Charleston Gray)medwcgB230
MELO3C010128.2Watermelon (97103) v1medwmB254
MELO3C010128.2Silver-seed gourdcarmedB0906