MELO3C010029 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C010029
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionVacuolar protein sorting-associated protein 13A, putative
Locationchr2 : 11305282 .. 11305647 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAATGACTGGTACACAAACAACTGTTGAGAAGTCACAAGTTGATGATCGTGCAGTGGGAAAACCTCGAGGATGGCTTAACTGGCTATCCCTTGGTATGTTAGGTGCTGGGGGTACTGAAGATTCAAGTCAATTTTCTGGTGTCATTTCTGATGATGTCGTAAAGGTATTTGTCTTGTTTCATCTTTTCTATGATGATCAAAACACTTACTTTTGTTTTTATTTGTAGGATATATACAAGGCTACCGAATTCCACCCTTCGGTTTTTCCTAATGTCAGTGCAGCTGATGAAGGAAGAATCTGCTTTTGTGCCATCGAATTCGACATTCATCAGATCTCAGCAACTTTGATGAGCAAGTATTAA

mRNA sequence

ATGGTAATGACTGGTACACAAACAACTGTTGAGAAGTCACAAGTTGATGATCGTGCAGTGGGAAAACCTCGAGGATGGCTTAACTGGCTATCCCTTGGTATGTTAGGTGCTGGGGGTACTGAAGATTCAAGTCAATTTTCTGGTGTCATTTCTGATGATGTCGTAAAGGATATATACAAGGCTACCGAATTCCACCCTTCGGTTTTTCCTAATGTCAGTGCAGCTGATGAAGGAAGAATCTGCTTTTGTGCCATCGAATTCGACATTCATCAGATCTCAGCAACTTTGATGAGCAAGTATTAA

Coding sequence (CDS)

ATGGTAATGACTGGTACACAAACAACTGTTGAGAAGTCACAAGTTGATGATCGTGCAGTGGGAAAACCTCGAGGATGGCTTAACTGGCTATCCCTTGGTATGTTAGGTGCTGGGGGTACTGAAGATTCAAGTCAATTTTCTGGTGTCATTTCTGATGATGTCGTAAAGGATATATACAAGGCTACCGAATTCCACCCTTCGGTTTTTCCTAATGTCAGTGCAGCTGATGAAGGAAGAATCTGCTTTTGTGCCATCGAATTCGACATTCATCAGATCTCAGCAACTTTGATGAGCAAGTATTAA

Protein sequence

MVMTGTQTTVEKSQVDDRAVGKPRGWLNWLSLGMLGAGGTEDSSQFSGVISDDVVKDIYKATEFHPSVFPNVSAADEGRICFCAIEFDIHQISATLMSKY*
Homology
[Close]
BLAST of MELO3C010029 vs. TrEMBL
Match: A0A0A0M027_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G652810 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 1.4e-46
Identity = 94/99 (94.95%), Postives = 95/99 (95.96%), Query Frame = 1 

Query: 1   MVMTGTQTTVEKSQVDDRAVGKPRGWLNWLSLGMLGAGGTEDSSQFSGVISDDVVKDIYK 60
           M MTG QTTVEKSQVDDRAVGKPRGWLNWLSLGMLGAGGTEDSSQFSGVISDDVVKDIYK
Sbjct: 69  MAMTGAQTTVEKSQVDDRAVGKPRGWLNWLSLGMLGAGGTEDSSQFSGVISDDVVKDIYK 128

Query: 61  ATEFHPSVFPNVSAADEGRICFCAIEFDIHQISATLMSK 100
           AT+FHPSVF NVSAADEGRICFCAIEFDIH ISATLMSK
Sbjct: 129 ATKFHPSVFSNVSAADEGRICFCAIEFDIHHISATLMSK 167

[Close]
BLAST of MELO3C010029 vs. TrEMBL
Match: W9QCI9_9ROSA (Putative vacuolar protein sorting-associated protein 13C OS=Morus notabilis GN=L484_010461 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 8.7e-25
Identity = 58/91 (63.74%), Postives = 72/91 (79.12%), Query Frame = 1 

Query: 9   TVEKSQVDDRAVGKPRGWLNWLSLGMLGAGGTEDSSQFSGVISDDVVKDIYKATEFHPSV 68
           +V+KS+ D+   GK RGWLNWLSLGMLGAGGT+DSSQFSGV+SD+V+KDIY+AT+FHP+ 
Sbjct: 282 SVDKSRNDEHLAGKSRGWLNWLSLGMLGAGGTDDSSQFSGVVSDEVIKDIYEATKFHPNT 341

Query: 69  FPNVSAADEGRICFCAIEFDIHQISATLMSK 100
             NV+AA   +I FCAI+F IHQ   T   K
Sbjct: 342 -SNVNAATNDKIYFCAIKFCIHQARGTTEPK 371

[Close]
BLAST of MELO3C010029 vs. TrEMBL
Match: B9RXC4_RICCO (Vacuolar protein sorting-associated protein, putative OS=Ricinus communis GN=RCOM_0902510 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.5e-24
Identity = 57/100 (57.00%), Postives = 76/100 (76.00%), Query Frame = 1 

Query: 1   MVMTGTQTTVEKSQVDDRAVGKPRGWLNWLSLGMLGAGGTEDSSQFSGVISDDVVKDIYK 60
           M + G   +++KS+ D+R +G+ RGWLNWLS GMLGAGGT+DS+QFSGV+SD+VVKDIY+
Sbjct: 420 MGVNGIDISLKKSRNDERLLGRSRGWLNWLSRGMLGAGGTDDSTQFSGVVSDEVVKDIYE 479

Query: 61  ATEFHPSVFPNVSAADEGRICFCAIEFDIHQISATLMSKY 101
           AT+FHPSVF +       ++  CAI+  I QI+A L SKY
Sbjct: 480 ATKFHPSVFSSGVVDATDKMFICAIKLSIGQITAALYSKY 519

[Close]
BLAST of MELO3C010029 vs. TrEMBL
Match: F6I5I1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0024g00200 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.5e-24
Identity = 57/100 (57.00%), Postives = 71/100 (71.00%), Query Frame = 1 

Query: 1   MVMTGTQTTVEKSQVDDRAVGKPRGWLNWLSLGMLGAGGTEDSSQFSGVISDDVVKDIYK 60
           M  +    TVEK   D+R+  + RGWLNWLSLGMLGAGGT+DS +FSGV+SD+V+KDIY+
Sbjct: 68  MGTSSANATVEKLPNDERSSSRSRGWLNWLSLGMLGAGGTDDSGEFSGVVSDEVIKDIYE 127

Query: 61  ATEFHPSVFPNVSAADEGRICFCAIEFDIHQISATLMSKY 101
           AT+FHP +  NV AA    I    ++F IHQISATL   Y
Sbjct: 128 ATKFHPVLLSNVDAAAADEIYLSTVKFSIHQISATLRRTY 167

[Close]
BLAST of MELO3C010029 vs. TrEMBL
Match: R0GSB5_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10000020mg PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 2.5e-24
Identity = 55/90 (61.11%), Postives = 69/90 (76.67%), Query Frame = 1 

Query: 7   QTTVEKSQVDDRAVGKPRGWLNWLSLGMLGAGGTEDSSQFSGVISDDVVKDIYKATEFHP 66
           Q+  EK Q DD    K RGWLNWLS GMLGAGGTEDSSQFSGV+SD+VVKDI+KAT+FHP
Sbjct: 432 QSASEKEQSDDPISNKSRGWLNWLSRGMLGAGGTEDSSQFSGVVSDEVVKDIHKATKFHP 491

Query: 67  SVFPNVSAADEGRICFCAIEFDIHQISATL 97
               + + +  G+IC C++  ++H+ISATL
Sbjct: 492 LSLSSKNTSATGKICTCSVRLNVHKISATL 521

[Close]
BLAST of MELO3C010029 vs. TAIR10
Match: AT5G24740.1 (AT5G24740.1 Protein of unknown function (DUF1162))

HSP 1 Score: 109.8 bits (273), Expect = 1.0e-24
Identity = 52/90 (57.78%), Postives = 64/90 (71.11%), Query Frame = 1 

Query: 7   QTTVEKSQVDDRAVGKPRGWLNWLSLGMLGAGGTEDSSQFSGVISDDVVKDIYKATEFHP 66
           Q+  EK   DD  + K RGWLNWLS GMLGAGGTEDSSQFSGV+SD+VVKDI+KAT+F+P
Sbjct: 397 QSAPEKEPSDDPTLNKSRGWLNWLSRGMLGAGGTEDSSQFSGVVSDEVVKDIHKATKFYP 456

Query: 67  SVFPNVSAADEGRICFCAIEFDIHQISATL 97
                 + +  G+IC C+I  ++ + SATL
Sbjct: 457 LSSSPRNTSATGKICTCSIRLNVRKFSATL 486

[Close]
BLAST of MELO3C010029 vs. NCBI nr
Match: gi|659085896|ref|XP_008443663.1| (PREDICTED: putative vacuolar protein sorting-associated protein 13A [Cucumis melo])

HSP 1 Score: 203.4 bits (516), Expect = 1.9e-49
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1 

Query: 1   MVMTGTQTTVEKSQVDDRAVGKPRGWLNWLSLGMLGAGGTEDSSQFSGVISDDVVKDIYK 60
           MVMTGTQTTVEKSQVDDRAVGKPRGWLNWLSLGMLGAGGTEDSSQFSGVISDDVVKDIYK
Sbjct: 413 MVMTGTQTTVEKSQVDDRAVGKPRGWLNWLSLGMLGAGGTEDSSQFSGVISDDVVKDIYK 472

Query: 61  ATEFHPSVFPNVSAADEGRICFCAIEFDIHQISATLMSK 100
           ATEFHPSVFPNVSAADEGRICFCAIEFDIHQISATLMSK
Sbjct: 473 ATEFHPSVFPNVSAADEGRICFCAIEFDIHQISATLMSK 511

[Close]
BLAST of MELO3C010029 vs. NCBI nr
Match: gi|778664064|ref|XP_011660209.1| (PREDICTED: uncharacterized protein LOC101204937 isoform X1 [Cucumis sativus])

HSP 1 Score: 193.4 bits (490), Expect = 2.0e-46
Identity = 94/99 (94.95%), Postives = 95/99 (95.96%), Query Frame = 1 

Query: 1   MVMTGTQTTVEKSQVDDRAVGKPRGWLNWLSLGMLGAGGTEDSSQFSGVISDDVVKDIYK 60
           M MTG QTTVEKSQVDDRAVGKPRGWLNWLSLGMLGAGGTEDSSQFSGVISDDVVKDIYK
Sbjct: 413 MAMTGAQTTVEKSQVDDRAVGKPRGWLNWLSLGMLGAGGTEDSSQFSGVISDDVVKDIYK 472

Query: 61  ATEFHPSVFPNVSAADEGRICFCAIEFDIHQISATLMSK 100
           AT+FHPSVF NVSAADEGRICFCAIEFDIH ISATLMSK
Sbjct: 473 ATKFHPSVFSNVSAADEGRICFCAIEFDIHHISATLMSK 511

[Close]
BLAST of MELO3C010029 vs. NCBI nr
Match: gi|700211553|gb|KGN66649.1| (hypothetical protein Csa_1G652810 [Cucumis sativus])

HSP 1 Score: 193.4 bits (490), Expect = 2.0e-46
Identity = 94/99 (94.95%), Postives = 95/99 (95.96%), Query Frame = 1 

Query: 1   MVMTGTQTTVEKSQVDDRAVGKPRGWLNWLSLGMLGAGGTEDSSQFSGVISDDVVKDIYK 60
           M MTG QTTVEKSQVDDRAVGKPRGWLNWLSLGMLGAGGTEDSSQFSGVISDDVVKDIYK
Sbjct: 69  MAMTGAQTTVEKSQVDDRAVGKPRGWLNWLSLGMLGAGGTEDSSQFSGVISDDVVKDIYK 128

Query: 61  ATEFHPSVFPNVSAADEGRICFCAIEFDIHQISATLMSK 100
           AT+FHPSVF NVSAADEGRICFCAIEFDIH ISATLMSK
Sbjct: 129 ATKFHPSVFSNVSAADEGRICFCAIEFDIHHISATLMSK 167

[Close]
BLAST of MELO3C010029 vs. NCBI nr
Match: gi|778664067|ref|XP_011660210.1| (PREDICTED: uncharacterized protein LOC101204937 isoform X2 [Cucumis sativus])

HSP 1 Score: 193.4 bits (490), Expect = 2.0e-46
Identity = 94/99 (94.95%), Postives = 95/99 (95.96%), Query Frame = 1 

Query: 1   MVMTGTQTTVEKSQVDDRAVGKPRGWLNWLSLGMLGAGGTEDSSQFSGVISDDVVKDIYK 60
           M MTG QTTVEKSQVDDRAVGKPRGWLNWLSLGMLGAGGTEDSSQFSGVISDDVVKDIYK
Sbjct: 413 MAMTGAQTTVEKSQVDDRAVGKPRGWLNWLSLGMLGAGGTEDSSQFSGVISDDVVKDIYK 472

Query: 61  ATEFHPSVFPNVSAADEGRICFCAIEFDIHQISATLMSK 100
           AT+FHPSVF NVSAADEGRICFCAIEFDIH ISATLMSK
Sbjct: 473 ATKFHPSVFSNVSAADEGRICFCAIEFDIHHISATLMSK 511

[Close]
BLAST of MELO3C010029 vs. NCBI nr
Match: gi|802585537|ref|XP_012070481.1| (PREDICTED: uncharacterized protein LOC105632652 [Jatropha curcas])

HSP 1 Score: 122.9 bits (307), Expect = 3.3e-25
Identity = 61/100 (61.00%), Postives = 75/100 (75.00%), Query Frame = 1 

Query: 1   MVMTGTQTTVEKSQVDDRAVGKPRGWLNWLSLGMLGAGGTEDSSQFSGVISDDVVKDIYK 60
           M + G   +V KS+ ++  +G+ RGWLNWLS GMLGAGGT+DSSQFSGV+SD+VVKDIY+
Sbjct: 421 MGVNGANISVAKSRNNETYLGRSRGWLNWLSRGMLGAGGTDDSSQFSGVVSDEVVKDIYE 480

Query: 61  ATEFHPSVFPNVSAADEGRICFCAIEFDIHQISATLMSKY 101
           ATEFHPSV  +  A    RI  CAI+  I QI+ATL SKY
Sbjct: 481 ATEFHPSVLSSGDADANDRIFTCAIKLTIGQIAATLQSKY 520

The following BLAST results are available for this feature:
BLAST of MELO3C010029 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M027_CUCSA1.4e-4694.95Uncharacterized protein OS=Cucumis sativus GN=Csa_1G652810 PE=4 SV=1[more]
W9QCI9_9ROSA8.7e-2563.74Putative vacuolar protein sorting-associated protein 13C OS=Morus notabilis GN=L... [more]
B9RXC4_RICCO1.5e-2457.00Vacuolar protein sorting-associated protein, putative OS=Ricinus communis GN=RCO... [more]
F6I5I1_VITVI1.5e-2457.00Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0024g00200 PE=4 SV=... [more]
R0GSB5_9BRAS2.5e-2461.11Uncharacterized protein OS=Capsella rubella GN=CARUB_v10000020mg PE=4 SV=1[more]
BLAST of MELO3C010029 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G24740.11.0e-2457.78 Protein of unknown function (DUF1162)[more]
BLAST of MELO3C010029 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659085896|ref|XP_008443663.1|1.9e-49100.00PREDICTED: putative vacuolar protein sorting-associated protein 13A [Cucumis mel... [more]
gi|778664064|ref|XP_011660209.1|2.0e-4694.95PREDICTED: uncharacterized protein LOC101204937 isoform X1 [Cucumis sativus][more]
gi|700211553|gb|KGN66649.1|2.0e-4694.95hypothetical protein Csa_1G652810 [Cucumis sativus][more]
gi|778664067|ref|XP_011660210.1|2.0e-4694.95PREDICTED: uncharacterized protein LOC101204937 isoform X2 [Cucumis sativus][more]
gi|802585537|ref|XP_012070481.1|3.3e-2561.00PREDICTED: uncharacterized protein LOC105632652 [Jatropha curcas][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR026847VPS13
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C010029T1MELO3C010029T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026847Vacuolar protein sorting-associated protein 13PANTHERPTHR16166VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13coord: 11..98
score: 2.4
NoneNo IPR availablePANTHERPTHR16166:SF100SUBFAMILY NOT NAMEDcoord: 11..98
score: 2.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C010029Cla009520Watermelon (97103) v1mewmB263
MELO3C010029Cla97C03G061100Watermelon (97103) v2mewmbB244
MELO3C010029CSPI01G32070Wild cucumber (PI 183967)cpimeB044
MELO3C010029Lsi06G006810Bottle gourd (USVL1VR-Ls)lsimeB398
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C010029Cucurbita pepo (Zucchini)cpemeB007
MELO3C010029Cucurbita pepo (Zucchini)cpemeB332
MELO3C010029Cucumber (Gy14) v2cgybmeB040
MELO3C010029Silver-seed gourdcarmeB0540
MELO3C010029Silver-seed gourdcarmeB0946
MELO3C010029Cucumber (Chinese Long) v3cucmeB044
MELO3C010029Wax gourdmewgoB315
MELO3C010029Cucumber (Gy14) v1cgymeB574
MELO3C010029Cucurbita maxima (Rimu)cmameB069
MELO3C010029Cucurbita maxima (Rimu)cmameB107
MELO3C010029Cucurbita moschata (Rifu)cmomeB061
MELO3C010029Cucurbita moschata (Rifu)cmomeB099
MELO3C010029Cucumber (Chinese Long) v2cumeB043
MELO3C010029Watermelon (Charleston Gray)mewcgB239