MELO3C010016 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C010016
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionTranscription initiation factor TFIID subunit 12
Locationchr2 : 10986998 .. 10987400 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGAAATGGAAGAACCCTGTAGTAGAATTCTCAGCAAAAGAAGTATTGGCAAATTGGTTAACCAAATCGATCCATCTGAGAGATTGGATCCTGAAGTGGAAGATATACTCGTTGATCTGGCAGAAGAGTTTGTTGAGTCAATTACAACATTCGGTTGCTCATTAGCGAAGCATCGCAAATCTACTACATTGGAAGCAAAAGACATCCTTCTACATCTTGAAAAAAATTGGAATCTAACACTTCCTGGGTTTGGTAGTGACGAGATTAAGATATTCAGAAAACCGCTTACAAATGATACTCACAGAGAACGTCTTGCAGCAGTAAAAAATCTATTGTGGCAAGCGAGATGGCAAGTACCAGAAGTTCTGCTGGACAGGCCGCTGGAAATACCAAAAGCAGTCTAA

mRNA sequence

AGAAATGGAAGAACCCTGTAGTAGAATTCTCAGCAAAAGAAGTATTGGCAAATTGGTTAACCAAATCGATCCATCTGAGAGATTGGATCCTGAAGTGGAAGATATACTCGTTGATCTGGCAGAAGAGTTTGTTGAGTCAATTACAACATTCGGTTGCTCATTAGCGAAGCATCGCAAATCTACTACATTGGAAGCAAAAGACATCCTTCTACATCTTGAAAAAAATTGGAATCTAACACTTCCTGGGTTTGGTAGTGACGAGATTAAGATATTCAGAAAACCGCTTACAAATGATACTCACAGAGAACGTCTTGCAGCAGTAAAAAATCTATTGTGGCAAGCGAGATGGCAAGTACCAGAAGTTCTGCTGGACAGGCCGCTGGAAATACCAAAAGCAGTCTAA

Coding sequence (CDS)

ATGGAAGAACCCTGTAGTAGAATTCTCAGCAAAAGAAGTATTGGCAAATTGGTTAACCAAATCGATCCATCTGAGAGATTGGATCCTGAAGTGGAAGATATACTCGTTGATCTGGCAGAAGAGTTTGTTGAGTCAATTACAACATTCGGTTGCTCATTAGCGAAGCATCGCAAATCTACTACATTGGAAGCAAAAGACATCCTTCTACATCTTGAAAAAAATTGGAATCTAACACTTCCTGGGTTTGGTAGTGACGAGATTAAGATATTCAGAAAACCGCTTACAAATGATACTCACAGAGAACGTCTTGCAGCAGTAAAAAATCTATTGTGGCAAGCGAGATGGCAAGTACCAGAAGTTCTGCTGGACAGGCCGCTGGAAATACCAAAAGCAGTCTAA

Protein sequence

MEEPCSRILSKRSIGKLVNQIDPSERLDPEVEDILVDLAEEFVESITTFGCSLAKHRKSTTLEAKDILLHLEKNWNLTLPGFGSDEIKIFRKPLTNDTHRERLAAVKNLLWQARWQVPEVLLDRPLEIPKAV*
Homology
[Close]
BLAST of MELO3C010016 vs. Swiss-Prot
Match: TAF12_ARATH (Transcription initiation factor TFIID subunit 12 OS=Arabidopsis thaliana GN=TAF12 PE=1 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 4.0e-39
Identity = 78/101 (77.23%), Postives = 86/101 (85.15%), Query Frame = 1 

Query: 7   RILSKRSIGKLVNQIDPSERLDPEVEDILVDLAEEFVESITTFGCSLAKHRKSTTLEAKD 66
           RIL KRSI +L+ QIDPSE+LDPEVEDIL D+AE+FVESITTFGCSLAKHRKS  LEAKD
Sbjct: 398 RILGKRSIHELLQQIDPSEKLDPEVEDILSDIAEDFVESITTFGCSLAKHRKSDILEAKD 457

Query: 67  ILLHLEKNWNLTLPGFGSDEIKIFRKPLTNDTHRERLAAVK 108
           ILLH+E+NWN+  PGF SDE K FRKPLT D H+ERLAA+K
Sbjct: 458 ILLHVERNWNIRPPGFSSDEFKTFRKPLTTDIHKERLAAIK 498

[Close]
BLAST of MELO3C010016 vs. Swiss-Prot
Match: TAF12_XENLA (Transcription initiation factor TFIID subunit 12 OS=Xenopus laevis GN=taf12 PE=2 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 7.9e-27
Identity = 48/102 (47.06%), Postives = 80/102 (78.43%), Query Frame = 1 

Query: 6   SRILSKRSIGKLVNQIDPSERLDPEVEDILVDLAEEFVESITTFGCSLAKHRKSTTLEAK 65
           +++LSK+ +  LV ++DP+E+LD +VE++L+ +A++F+ES+ +  C LA+HRKS TLE K
Sbjct: 58  NQVLSKKKLHDLVREVDPNEQLDEDVEEMLLQIADDFIESVVSAACQLARHRKSNTLEVK 117

Query: 66  DILLHLEKNWNLTLPGFGSDEIKIFRKPLTNDTHRERLAAVK 108
           D+ LHLE+ WN+ +PGFGS+EI+ ++K  T + H++R+A +K
Sbjct: 118 DVQLHLERQWNMWIPGFGSEEIRPYKKACTTEAHKQRMALIK 159

[Close]
BLAST of MELO3C010016 vs. Swiss-Prot
Match: TAF12_MOUSE (Transcription initiation factor TFIID subunit 12 OS=Mus musculus GN=Taf12 PE=1 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.0e-26
Identity = 47/102 (46.08%), Postives = 81/102 (79.41%), Query Frame = 1 

Query: 6   SRILSKRSIGKLVNQIDPSERLDPEVEDILVDLAEEFVESITTFGCSLAKHRKSTTLEAK 65
           +++L+K+ +  LV ++DP+E+LD +VE++L+ +A++F+ES+ T  C LA+HRKS+TLE K
Sbjct: 55  NQVLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVK 114

Query: 66  DILLHLEKNWNLTLPGFGSDEIKIFRKPLTNDTHRERLAAVK 108
           D+ LHLE+ WN+ +PGFGS+EI+ ++K  T + H++R+A ++
Sbjct: 115 DVQLHLERQWNMWIPGFGSEEIRPYKKACTTEAHKQRMALIR 156

[Close]
BLAST of MELO3C010016 vs. Swiss-Prot
Match: TAF12_HUMAN (Transcription initiation factor TFIID subunit 12 OS=Homo sapiens GN=TAF12 PE=1 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.0e-26
Identity = 47/102 (46.08%), Postives = 81/102 (79.41%), Query Frame = 1 

Query: 6   SRILSKRSIGKLVNQIDPSERLDPEVEDILVDLAEEFVESITTFGCSLAKHRKSTTLEAK 65
           +++L+K+ +  LV ++DP+E+LD +VE++L+ +A++F+ES+ T  C LA+HRKS+TLE K
Sbjct: 55  NQVLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVK 114

Query: 66  DILLHLEKNWNLTLPGFGSDEIKIFRKPLTNDTHRERLAAVK 108
           D+ LHLE+ WN+ +PGFGS+EI+ ++K  T + H++R+A ++
Sbjct: 115 DVQLHLERQWNMWIPGFGSEEIRPYKKACTTEAHKQRMALIR 156

[Close]
BLAST of MELO3C010016 vs. Swiss-Prot
Match: TAF12_BOVIN (Transcription initiation factor TFIID subunit 12 OS=Bos taurus GN=TAF12 PE=2 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.0e-26
Identity = 47/102 (46.08%), Postives = 81/102 (79.41%), Query Frame = 1 

Query: 6   SRILSKRSIGKLVNQIDPSERLDPEVEDILVDLAEEFVESITTFGCSLAKHRKSTTLEAK 65
           +++L+K+ +  LV ++DP+E+LD +VE++L+ +A++F+ES+ T  C LA+HRKS+TLE K
Sbjct: 55  NQVLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVK 114

Query: 66  DILLHLEKNWNLTLPGFGSDEIKIFRKPLTNDTHRERLAAVK 108
           D+ LHLE+ WN+ +PGFGS+EI+ ++K  T + H++R+A ++
Sbjct: 115 DVQLHLERQWNMWIPGFGSEEIRPYKKACTTEAHKQRMALIR 156

[Close]
BLAST of MELO3C010016 vs. TrEMBL
Match: A0A0A0KEX0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G452070 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 9.9e-53
Identity = 106/107 (99.07%), Postives = 107/107 (100.00%), Query Frame = 1 

Query: 1   MEEPCSRILSKRSIGKLVNQIDPSERLDPEVEDILVDLAEEFVESITTFGCSLAKHRKST 60
           MEEPCSRILSKRSIGKLVNQIDPSERLDPEVEDILVDLAEEFVESITTFGCSLAKHRKST
Sbjct: 373 MEEPCSRILSKRSIGKLVNQIDPSERLDPEVEDILVDLAEEFVESITTFGCSLAKHRKST 432

Query: 61  TLEAKDILLHLEKNWNLTLPGFGSDEIKIFRKPLTNDTHRERLAAVK 108
           TLEAKDILLHLEKNWNLTLPGFGSDEIKIFRKPLTNDTHRER+AAVK
Sbjct: 433 TLEAKDILLHLEKNWNLTLPGFGSDEIKIFRKPLTNDTHRERVAAVK 479

[Close]
BLAST of MELO3C010016 vs. TrEMBL
Match: M5WDV6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017159mg PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.1e-43
Identity = 87/106 (82.08%), Postives = 99/106 (93.40%), Query Frame = 1 

Query: 2   EEPCSRILSKRSIGKLVNQIDPSERLDPEVEDILVDLAEEFVESITTFGCSLAKHRKSTT 61
           +E C+RILSKRSI +LVNQIDPSE+LDPEVEDIL+D+A+EFVESITTF CSLAKHRKSTT
Sbjct: 355 DESCNRILSKRSIHELVNQIDPSEKLDPEVEDILMDIADEFVESITTFSCSLAKHRKSTT 414

Query: 62  LEAKDILLHLEKNWNLTLPGFGSDEIKIFRKPLTNDTHRERLAAVK 108
           LEAKDILLH+EKNWN+TLPGFG DEIK FRKPLTND H+ERL+ +K
Sbjct: 415 LEAKDILLHIEKNWNITLPGFGGDEIKGFRKPLTNDIHKERLSVIK 460

[Close]
BLAST of MELO3C010016 vs. TrEMBL
Match: A0A059A4S4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K02056 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.6e-42
Identity = 84/106 (79.25%), Postives = 98/106 (92.45%), Query Frame = 1 

Query: 2   EEPCSRILSKRSIGKLVNQIDPSERLDPEVEDILVDLAEEFVESITTFGCSLAKHRKSTT 61
           +E C+RILSKRSI +LVNQIDPSE+LDPEVEDILVD+AEEFVESIT FGCSLAKHRKST+
Sbjct: 387 DESCNRILSKRSIHELVNQIDPSEKLDPEVEDILVDIAEEFVESITAFGCSLAKHRKSTS 446

Query: 62  LEAKDILLHLEKNWNLTLPGFGSDEIKIFRKPLTNDTHRERLAAVK 108
           LEAKDILLHLE+NWN+ LPGF +DE+K +RKP+TND H+ERLA +K
Sbjct: 447 LEAKDILLHLERNWNIALPGFSADEVKSYRKPVTNDIHKERLAVIK 492

[Close]
BLAST of MELO3C010016 vs. TrEMBL
Match: A0A059A3M4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K02056 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.6e-42
Identity = 84/106 (79.25%), Postives = 98/106 (92.45%), Query Frame = 1 

Query: 2   EEPCSRILSKRSIGKLVNQIDPSERLDPEVEDILVDLAEEFVESITTFGCSLAKHRKSTT 61
           +E C+RILSKRSI +LVNQIDPSE+LDPEVEDILVD+AEEFVESIT FGCSLAKHRKST+
Sbjct: 403 DESCNRILSKRSIHELVNQIDPSEKLDPEVEDILVDIAEEFVESITAFGCSLAKHRKSTS 462

Query: 62  LEAKDILLHLEKNWNLTLPGFGSDEIKIFRKPLTNDTHRERLAAVK 108
           LEAKDILLHLE+NWN+ LPGF +DE+K +RKP+TND H+ERLA +K
Sbjct: 463 LEAKDILLHLERNWNIALPGFSADEVKSYRKPVTNDIHKERLAVIK 508

[Close]
BLAST of MELO3C010016 vs. TrEMBL
Match: W9RG68_9ROSA (Transcription initiation factor TFIID subunit 12 OS=Morus notabilis GN=L484_015424 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.6e-42
Identity = 84/106 (79.25%), Postives = 98/106 (92.45%), Query Frame = 1 

Query: 2   EEPCSRILSKRSIGKLVNQIDPSERLDPEVEDILVDLAEEFVESITTFGCSLAKHRKSTT 61
           +E C+RILSKRSI +LV+Q+DPSE+LDPEVEDIL+D+A++FVESITTFGCSLAKHRKSTT
Sbjct: 427 DESCNRILSKRSIHELVSQVDPSEKLDPEVEDILMDIADDFVESITTFGCSLAKHRKSTT 486

Query: 62  LEAKDILLHLEKNWNLTLPGFGSDEIKIFRKPLTNDTHRERLAAVK 108
           LEAKDILLHLE+NWN+TLPGFG DEIK FRKP+ ND H ERL A+K
Sbjct: 487 LEAKDILLHLERNWNITLPGFGGDEIKSFRKPVVNDIHMERLVAIK 532

[Close]
BLAST of MELO3C010016 vs. TAIR10
Match: AT3G10070.1 (AT3G10070.1 TBP-associated factor 12)

HSP 1 Score: 162.2 bits (409), Expect = 2.3e-40
Identity = 78/101 (77.23%), Postives = 86/101 (85.15%), Query Frame = 1 

Query: 7   RILSKRSIGKLVNQIDPSERLDPEVEDILVDLAEEFVESITTFGCSLAKHRKSTTLEAKD 66
           RIL KRSI +L+ QIDPSE+LDPEVEDIL D+AE+FVESITTFGCSLAKHRKS  LEAKD
Sbjct: 398 RILGKRSIHELLQQIDPSEKLDPEVEDILSDIAEDFVESITTFGCSLAKHRKSDILEAKD 457

Query: 67  ILLHLEKNWNLTLPGFGSDEIKIFRKPLTNDTHRERLAAVK 108
           ILLH+E+NWN+  PGF SDE K FRKPLT D H+ERLAA+K
Sbjct: 458 ILLHVERNWNIRPPGFSSDEFKTFRKPLTTDIHKERLAAIK 498

[Close]
BLAST of MELO3C010016 vs. TAIR10
Match: AT1G17440.1 (AT1G17440.1 Transcription initiation factor TFIID subunit A)

HSP 1 Score: 120.2 bits (300), Expect = 9.9e-28
Identity = 58/108 (53.70%), Postives = 82/108 (75.93%), Query Frame = 1 

Query: 3   EPCSRILSKRSIGKLVNQIDPSERLDPEVEDILVDLAEEFVESITTFGCSLAKHRKSTTL 62
           E  +++L KR I  LV+Q+D   +LDP+VED+L+++A++F++S+T+F CSLAKHRKS+ L
Sbjct: 522 EATNQLLGKRKIQDLVSQVDVHAKLDPDVEDLLLEVADDFIDSVTSFACSLAKHRKSSVL 581

Query: 63  EAKDILLHLEKNWNLTLPGFGSDEIKIFRKPLTNDTHRERLAAVKNLL 111
           E KDILLHLEKN +LT+PGF S++ K   K +  D H++RLA V+ LL
Sbjct: 582 EPKDILLHLEKNLHLTIPGFSSED-KRQTKTVPTDLHKKRLAMVRALL 628

[Close]
BLAST of MELO3C010016 vs. NCBI nr
Match: gi|659125404|ref|XP_008462670.1| (PREDICTED: transcription initiation factor TFIID subunit 12 [Cucumis melo])

HSP 1 Score: 215.3 bits (547), Expect = 6.4e-53
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1 

Query: 1   MEEPCSRILSKRSIGKLVNQIDPSERLDPEVEDILVDLAEEFVESITTFGCSLAKHRKST 60
           MEEPCSRILSKRSIGKLVNQIDPSERLDPEVEDILVDLAEEFVESITTFGCSLAKHRKST
Sbjct: 348 MEEPCSRILSKRSIGKLVNQIDPSERLDPEVEDILVDLAEEFVESITTFGCSLAKHRKST 407

Query: 61  TLEAKDILLHLEKNWNLTLPGFGSDEIKIFRKPLTNDTHRERLAAVK 108
           TLEAKDILLHLEKNWNLTLPGFGSDEIKIFRKPLTNDTHRERLAAVK
Sbjct: 408 TLEAKDILLHLEKNWNLTLPGFGSDEIKIFRKPLTNDTHRERLAAVK 454

[Close]
BLAST of MELO3C010016 vs. NCBI nr
Match: gi|778717464|ref|XP_011657696.1| (PREDICTED: transcription initiation factor TFIID subunit 12 isoform X2 [Cucumis sativus])

HSP 1 Score: 214.2 bits (544), Expect = 1.4e-52
Identity = 106/107 (99.07%), Postives = 107/107 (100.00%), Query Frame = 1 

Query: 1   MEEPCSRILSKRSIGKLVNQIDPSERLDPEVEDILVDLAEEFVESITTFGCSLAKHRKST 60
           MEEPCSRILSKRSIGKLVNQIDPSERLDPEVEDILVDLAEEFVESITTFGCSLAKHRKST
Sbjct: 330 MEEPCSRILSKRSIGKLVNQIDPSERLDPEVEDILVDLAEEFVESITTFGCSLAKHRKST 389

Query: 61  TLEAKDILLHLEKNWNLTLPGFGSDEIKIFRKPLTNDTHRERLAAVK 108
           TLEAKDILLHLEKNWNLTLPGFGSDEIKIFRKPLTNDTHRER+AAVK
Sbjct: 390 TLEAKDILLHLEKNWNLTLPGFGSDEIKIFRKPLTNDTHRERVAAVK 436

[Close]
BLAST of MELO3C010016 vs. NCBI nr
Match: gi|778717461|ref|XP_011657695.1| (PREDICTED: transcription initiation factor TFIID subunit 12 isoform X1 [Cucumis sativus])

HSP 1 Score: 214.2 bits (544), Expect = 1.4e-52
Identity = 106/107 (99.07%), Postives = 107/107 (100.00%), Query Frame = 1 

Query: 1   MEEPCSRILSKRSIGKLVNQIDPSERLDPEVEDILVDLAEEFVESITTFGCSLAKHRKST 60
           MEEPCSRILSKRSIGKLVNQIDPSERLDPEVEDILVDLAEEFVESITTFGCSLAKHRKST
Sbjct: 373 MEEPCSRILSKRSIGKLVNQIDPSERLDPEVEDILVDLAEEFVESITTFGCSLAKHRKST 432

Query: 61  TLEAKDILLHLEKNWNLTLPGFGSDEIKIFRKPLTNDTHRERLAAVK 108
           TLEAKDILLHLEKNWNLTLPGFGSDEIKIFRKPLTNDTHRER+AAVK
Sbjct: 433 TLEAKDILLHLEKNWNLTLPGFGSDEIKIFRKPLTNDTHRERVAAVK 479

[Close]
BLAST of MELO3C010016 vs. NCBI nr
Match: gi|659134063|ref|XP_008467013.1| (PREDICTED: LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 12-like, partial [Cucumis melo])

HSP 1 Score: 209.1 bits (531), Expect = 4.6e-51
Identity = 104/107 (97.20%), Postives = 105/107 (98.13%), Query Frame = 1 

Query: 1   MEEPCSRILSKRSIGKLVNQIDPSERLDPEVEDILVDLAEEFVESITTFGCSLAKHRKST 60
           MEEPCSRILSKRSIGKLVNQI+PSERLDPEVEDILVDLAEEFVESITTFGCSLAKHRKST
Sbjct: 183 MEEPCSRILSKRSIGKLVNQINPSERLDPEVEDILVDLAEEFVESITTFGCSLAKHRKST 242

Query: 61  TLEAKDILLHLEKNWNLTLPGFGSDEIKIFRKPLTNDTHRERLAAVK 108
           TLEAKDILLHLEKNWNLTLPGFGSDEIKIFRKPL NDTHRERLAA K
Sbjct: 243 TLEAKDILLHLEKNWNLTLPGFGSDEIKIFRKPLINDTHRERLAAXK 289

[Close]
BLAST of MELO3C010016 vs. NCBI nr
Match: gi|595814479|ref|XP_007203746.1| (hypothetical protein PRUPE_ppa017159mg [Prunus persica])

HSP 1 Score: 184.1 bits (466), Expect = 1.6e-43
Identity = 87/106 (82.08%), Postives = 99/106 (93.40%), Query Frame = 1 

Query: 2   EEPCSRILSKRSIGKLVNQIDPSERLDPEVEDILVDLAEEFVESITTFGCSLAKHRKSTT 61
           +E C+RILSKRSI +LVNQIDPSE+LDPEVEDIL+D+A+EFVESITTF CSLAKHRKSTT
Sbjct: 355 DESCNRILSKRSIHELVNQIDPSEKLDPEVEDILMDIADEFVESITTFSCSLAKHRKSTT 414

Query: 62  LEAKDILLHLEKNWNLTLPGFGSDEIKIFRKPLTNDTHRERLAAVK 108
           LEAKDILLH+EKNWN+TLPGFG DEIK FRKPLTND H+ERL+ +K
Sbjct: 415 LEAKDILLHIEKNWNITLPGFGGDEIKGFRKPLTNDIHKERLSVIK 460

The following BLAST results are available for this feature:
BLAST of MELO3C010016 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TAF12_ARATH4.0e-3977.23Transcription initiation factor TFIID subunit 12 OS=Arabidopsis thaliana GN=TAF1... [more]
TAF12_XENLA7.9e-2747.06Transcription initiation factor TFIID subunit 12 OS=Xenopus laevis GN=taf12 PE=2... [more]
TAF12_MOUSE1.0e-2646.08Transcription initiation factor TFIID subunit 12 OS=Mus musculus GN=Taf12 PE=1 S... [more]
TAF12_HUMAN1.0e-2646.08Transcription initiation factor TFIID subunit 12 OS=Homo sapiens GN=TAF12 PE=1 S... [more]
TAF12_BOVIN1.0e-2646.08Transcription initiation factor TFIID subunit 12 OS=Bos taurus GN=TAF12 PE=2 SV=... [more]
BLAST of MELO3C010016 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KEX0_CUCSA9.9e-5399.07Uncharacterized protein OS=Cucumis sativus GN=Csa_6G452070 PE=4 SV=1[more]
M5WDV6_PRUPE1.1e-4382.08Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017159mg PE=4 SV=1[more]
A0A059A4S4_EUCGR1.6e-4279.25Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K02056 PE=4 SV=1[more]
A0A059A3M4_EUCGR1.6e-4279.25Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K02056 PE=4 SV=1[more]
W9RG68_9ROSA1.6e-4279.25Transcription initiation factor TFIID subunit 12 OS=Morus notabilis GN=L484_0154... [more]
BLAST of MELO3C010016 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G10070.12.3e-4077.23 TBP-associated factor 12[more]
AT1G17440.19.9e-2853.70 Transcription initiation factor TFIID subunit A[more]
BLAST of MELO3C010016 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659125404|ref|XP_008462670.1|6.4e-53100.00PREDICTED: transcription initiation factor TFIID subunit 12 [Cucumis melo][more]
gi|778717464|ref|XP_011657696.1|1.4e-5299.07PREDICTED: transcription initiation factor TFIID subunit 12 isoform X2 [Cucumis ... [more]
gi|778717461|ref|XP_011657695.1|1.4e-5299.07PREDICTED: transcription initiation factor TFIID subunit 12 isoform X1 [Cucumis ... [more]
gi|659134063|ref|XP_008467013.1|4.6e-5197.20PREDICTED: LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 12... [more]
gi|595814479|ref|XP_007203746.1|1.6e-4382.08hypothetical protein PRUPE_ppa017159mg [Prunus persica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003228TFIID_TAF12_dom
IPR009072Histone-fold
Vocabulary: Biological Process
TermDefinition
GO:0006352DNA-templated transcription, initiation
Vocabulary: Cellular Component
TermDefinition
GO:0005669transcription factor TFIID complex
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006352 DNA-templated transcription, initiation
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation
biological_process GO:0006366 transcription from RNA polymerase II promoter
cellular_component GO:0005840 ribosome
cellular_component GO:0005669 transcription factor TFIID complex
molecular_function GO:0046982 protein heterodimerization activity
molecular_function GO:0003743 translation initiation factor activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C010016T1MELO3C010016T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003228Transcription initiation factor TFIIDPRODOMPD012998coord: 6..80
score: 3.0
IPR003228Transcription initiation factor TFIIDPFAMPF03847TFIID_20kDacoord: 10..77
score: 8.9
IPR009072Histone-foldGENE3DG3DSA:1.10.20.10coord: 6..78
score: 2.9
IPR009072Histone-foldunknownSSF47113Histone-foldcoord: 7..78
score: 1.09
NoneNo IPR availablePANTHERPTHR12264FAMILY NOT NAMEDcoord: 6..107
score: 1.8

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C010016Cucumber (Chinese Long) v3cucmeB044
MELO3C010016Cucumber (Gy14) v1cgymeB574
MELO3C010016Cucurbita maxima (Rimu)cmameB069
MELO3C010016Cucurbita maxima (Rimu)cmameB107
MELO3C010016Cucurbita moschata (Rifu)cmomeB061
MELO3C010016Cucurbita moschata (Rifu)cmomeB099
MELO3C010016Wild cucumber (PI 183967)cpimeB044
MELO3C010016Cucumber (Chinese Long) v2cumeB043
MELO3C010016Watermelon (Charleston Gray)mewcgB239
MELO3C010016Watermelon (97103) v1mewmB263
MELO3C010016Cucurbita pepo (Zucchini)cpemeB007
MELO3C010016Cucurbita pepo (Zucchini)cpemeB332
MELO3C010016Bottle gourd (USVL1VR-Ls)lsimeB398
MELO3C010016Cucumber (Gy14) v2cgybmeB040
MELO3C010016Silver-seed gourdcarmeB0540
MELO3C010016Silver-seed gourdcarmeB0946