MELO3C008722 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C008722
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionCleavage and polyadenylation specificity factor subunit 1
Locationchr5 : 17868079 .. 17871494 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGATCAAGATGTTGGTCACGTTGAGAATCATAACTTGAGTGCTGATGAGCTGCAGCAAACTTACTCTGTGGAAGAGTTCGAAATTCGGATTTTGGAACCAGAAAAATCTGGTGGCCCTTGGCAAACTAGGGCTACAATTGCTATGCACAGTTCTGAAAATGCCCTTACCATTCGAGTTGTTACACTGTTGGTCAGTTCTTTTGCTTTTCTTTCCTTTCCCTTGTTAATCATTTTTGGTGATCCTATTTTCCAAAAAATTCTAGCTCACAAGGATAGGGTATGATGAGTTAATAGTTGTAGACAAAAGAAAGAGTATTATGTTAGGATACTTCCTAGTAAGAATCAAGATCTAAAGTATAATGAGAATTAAAGAAGAAACTACAATATAACCCTAGTATAAAGGAACTTGGAACCACCCTCTTGAGTGCTCTCACCCAAGCCCAAGATTGCTCTACAAAATAGTTTTCCCTTCACCCATCCTCTTACTATTTATACAACATCTAGTAACTAACTTGGTAGACCCTCAAATATATACACCTATAAAAGGAAGGGTAAAAAGGGAATTACACATGAGACACCACTGTCGTGACTTTGGGCAAAGTGTCAATATTAGACATGGATATGTCAGACATGCTCTCGACATGTATCGGATACGTGAAAATTTGCGTGCCCCTTGTTATTACGTTTTAATTTTGGACACATGAGGACATGCCATCAAACACATAGACCCAAAAACCAAACCTTTTAAAACAAACGGTGACATTGGAGAAAGATGGTAGATGGAAGAAGGTTGAACAAGTACAAAGAGGTGTGGTGGGCGGAGGAAGGTTGAACAACTGGACGACAATAGAGAGAGGTGGTCGGCATGCAACTCCAACATCGGGGGAAGGGAGAGCACAATTGAGGATGAGGGTGAAGGCGGAGGGCAGTTAGGCGTGGGAATAGGCAAGAAGGAAATAATATTTATAGTTTGGGTTCTTCTTTTGGGCTTTGGGCTTTCTTAAATCCCATTTCATTTGATGTGGCCCTGGTTATTTTTTCTGTTGAAATTGACCTTTTCTTTTCTTTTATTATTATTTTTTAAAATGGTTATTTTTAATAACTAATACAAAAAGCTAGTATTAATAATTTTTATTACTCAATAAAAATAATTACCCCAGCGTGTTGTGTCTTACATTTTCAAAAATTGGCACATTGCCATGTCATACTGTGTCCTGTCACGTGTCTCGTGTCCATGCCCGTGCTTCTTAGATTATGGGCATATGTTTTGAAGACTTTTTGTAGTAATCAGTAAGGTACTACTTTTTTGGACTCAATCCCTTTTTTGTAAGTTTAGGTTTTTCTTGGTCAGTTGTTTTCTTCCTTTTGGTGTGTTCTTGTTTTATCCTTTCATTTTTCTGAACAAAGACTTGTTTTCTTATTCCAATATAAAATAATAAGTAAGAAGCACCTTTTCTCTGTTTCTTGAGTTGGCTTTCTAATAGATCTCCAATTACGAAACTGTATCAATGTAGGGAGTATCGGAGATCTAGTTAACGTGCAATTGTGTTAGACCCAACAATTTTGTTCAGTTAGGAAGGTTGACTTGTGAAATTCTTTGGGGAGATATAGGGAAGATTAATTTGGGTGAGAGAGAGAGGAGAGGTAGGAAGCTTTGGAATTTCATTTGTAAGTACCTTTAGCTTTAATGCACTACGTTGATTTCAGTAACTTTCTATATCTGTCTTTTGGTTTTATTAAAAAAATTTAAAGAAATAAATTGACATAGTACGCATTTTTCTCCCTTTTTTGTAGAACGCAACTACAAAAGAGAATGAAACACTTTTAGCTGTTGGAACTGCATATGTGCAAGGGGAGGATGTTGCTGCAAGAGGAAGAGTACTTTTATTTTCTGTTGGAAAAGATGCTGATAATTCACAGACCTTGGTACATTGTTTCTAAACTTTCTATTATTTGTTTTACTATGTAATTATTAATCTATGTTTTTTTTGTTTTTTTTTGGGTTAATCTAGGAACATAAATTTTGAAGGTTGCTATCTGAAAACTTTGGAAGTTTCAAATTCAAAACATTCTTTCATTGTTTGCTCGTTGATATTTCAACCTTTGGTTCTTAACTTATTTCAGGTTTCAGAGGTTTATTCGAAAGAATTGAAGGGTGCTATTTCTGCTTTGGCCTCTCTGCAAGGTCATCTATTGATAGCGTCTGGTCCTAAAATAATCTTACACAAATGGACTGGTGCAGAGTTGAATGGCATTGCATTTTATGATGTTCCACCTTTATATGTTGTGAGCTTGAACATTGTACGTTCTACTTTTTCACTGCACTTTATCTCTTAGTTATATTTATGATATTTACATGTTAAATCTAGGCATATGTCTTGAGTGTTGCTATTAGTGTCTAACTAATCCAAGCATTGTTTATGGCCCATGTGTTGAAGTTTTTGAATGGGAAGGAAATTTATGTTGAACATACCTGAGCTTTGAATCCTATCTTTACAGATAGTGCCTCTTTCAAGAAAACTTAATCTATCATGCAAGAATTTACTTATTGGTACTATTACTCAGTAGTTTGTCTCTCTTAAAAAATTTTTGGATATGCAAAAAAGCGGTAGAAATAAATCTAGAAATATGAAAAGTTTTACTATTCACGTGGATGATGTTCCAGTCTTACATTTCCCGGACTTCAAGCCTGTCTTAGTGTGTGTATGGGAACTGCTGCAGGTCAAGAATTTCATACTTCTTGGTGATATACACAAGAGCATTTACTTTTTGAGTTGGAAAGAACAGGGAGCTCAACTGAGCTTGTTGGCGAAGGATTTTGGTTCTCTAGACTGCTATGCAACAGAATTTCTGATTGATGGAAGCACTCTTAGCCTTACTGTTTCTGATGATCAGAAGAATATTCAGGTACGTTTCTTATTTGAATATTGCTCTCCCTTTCTTTCCTGTGTAAACTAAACTTTACAATAAAGTAACATATTTCTTGTTTGTTTATTCAAATATTTTATATGTATACCACAACAGATATTTTATTATGCACCTAAGTCAACCGAAAGTTGGAAAGGGCAGAAGCTTCTATCAAGAGCTGAATTTCATGTCGGTGCTCATGTGACGAAGTTTCTACGGCTACAGATGTTGTCTACCAGTTCAGACAAAGCATGCAGTACAGTTTCTGACAAGACCAACCGCTTTGCTTTGTTATTCGGCACCCTTGATGGAAGTATTGGTTGTATTGCGCCTCTTGATGAACTCACATTTCGAAGACTGCAGTCATTACAAAAGAAGCTTGGTGATGCCGTTCCCCATGTTGGTGGTTTAAACCCAAGGTCTTTTCGCCAGTTTCATTCAAATGGAAAGGTTCATCGACGTGGGCCAGATAGTATAGTTGATTGTGAATTACTGTGCCAGTAA

mRNA sequence

ATGGTTGATCAAGATGTTGGTCACGTTGAGAATCATAACTTGAGTGCTGATGAGCTGCAGCAAACTTACTCTGTGGAAGAGTTCGAAATTCGGATTTTGGAACCAGAAAAATCTGGTGGCCCTTGGCAAACTAGGGCTACAATTGCTATGCACAGTTCTGAAAATGCCCTTACCATTCGAGTTGTTACACTGTTGAACGCAACTACAAAAGAGAATGAAACACTTTTAGCTGTTGGAACTGCATATGTGCAAGGGGAGGATGTTGCTGCAAGAGGAAGAGTACTTTTATTTTCTGTTGGAAAAGATGCTGATAATTCACAGACCTTGGTTTCAGAGGTTTATTCGAAAGAATTGAAGGGTGCTATTTCTGCTTTGGCCTCTCTGCAAGGTCATCTATTGATAGCGTCTGGTCCTAAAATAATCTTACACAAATGGACTGGTGCAGAGTTGAATGGCATTGCATTTTATGATGTTCCACCTTTATATGTTGTGAGCTTGAACATTGTCAAGAATTTCATACTTCTTGGTGATATACACAAGAGCATTTACTTTTTGAGTTGGAAAGAACAGGGAGCTCAACTGAGCTTGTTGGCGAAGGATTTTGGTTCTCTAGACTGCTATGCAACAGAATTTCTGATTGATGGAAGCACTCTTAGCCTTACTGTTTCTGATGATCAGAAGAATATTCAGATATTTTATTATGCACCTAAGTCAACCGAAAGTTGGAAAGGGCAGAAGCTTCTATCAAGAGCTGAATTTCATGTCGGTGCTCATGTGACGAAGTTTCTACGGCTACAGATGTTGTCTACCAGTTCAGACAAAGCATGCAGTACAGTTTCTGACAAGACCAACCGCTTTGCTTTGTTATTCGGCACCCTTGATGGAAGTATTGGTTGTATTGCGCCTCTTGATGAACTCACATTTCGAAGACTGCAGTCATTACAAAAGAAGCTTGGTGATGCCGTTCCCCATGTTGGTGGTTTAAACCCAAGGTCTTTTCGCCAGTTTCATTCAAATGGAAAGGTTCATCGACGTGGGCCAGATAGTATAGTTGATTGTGAATTACTGTGCCAGTAA

Coding sequence (CDS)

ATGGTTGATCAAGATGTTGGTCACGTTGAGAATCATAACTTGAGTGCTGATGAGCTGCAGCAAACTTACTCTGTGGAAGAGTTCGAAATTCGGATTTTGGAACCAGAAAAATCTGGTGGCCCTTGGCAAACTAGGGCTACAATTGCTATGCACAGTTCTGAAAATGCCCTTACCATTCGAGTTGTTACACTGTTGAACGCAACTACAAAAGAGAATGAAACACTTTTAGCTGTTGGAACTGCATATGTGCAAGGGGAGGATGTTGCTGCAAGAGGAAGAGTACTTTTATTTTCTGTTGGAAAAGATGCTGATAATTCACAGACCTTGGTTTCAGAGGTTTATTCGAAAGAATTGAAGGGTGCTATTTCTGCTTTGGCCTCTCTGCAAGGTCATCTATTGATAGCGTCTGGTCCTAAAATAATCTTACACAAATGGACTGGTGCAGAGTTGAATGGCATTGCATTTTATGATGTTCCACCTTTATATGTTGTGAGCTTGAACATTGTCAAGAATTTCATACTTCTTGGTGATATACACAAGAGCATTTACTTTTTGAGTTGGAAAGAACAGGGAGCTCAACTGAGCTTGTTGGCGAAGGATTTTGGTTCTCTAGACTGCTATGCAACAGAATTTCTGATTGATGGAAGCACTCTTAGCCTTACTGTTTCTGATGATCAGAAGAATATTCAGATATTTTATTATGCACCTAAGTCAACCGAAAGTTGGAAAGGGCAGAAGCTTCTATCAAGAGCTGAATTTCATGTCGGTGCTCATGTGACGAAGTTTCTACGGCTACAGATGTTGTCTACCAGTTCAGACAAAGCATGCAGTACAGTTTCTGACAAGACCAACCGCTTTGCTTTGTTATTCGGCACCCTTGATGGAAGTATTGGTTGTATTGCGCCTCTTGATGAACTCACATTTCGAAGACTGCAGTCATTACAAAAGAAGCTTGGTGATGCCGTTCCCCATGTTGGTGGTTTAAACCCAAGGTCTTTTCGCCAGTTTCATTCAAATGGAAAGGTTCATCGACGTGGGCCAGATAGTATAGTTGATTGTGAATTACTGTGCCAGTAA

Protein sequence

MVDQDVGHVENHNLSADELQQTYSVEEFEIRILEPEKSGGPWQTRATIAMHSSENALTIRVVTLLNATTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDADNSQTLVSEVYSKELKGAISALASLQGHLLIASGPKIILHKWTGAELNGIAFYDVPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQLSLLAKDFGSLDCYATEFLIDGSTLSLTVSDDQKNIQIFYYAPKSTESWKGQKLLSRAEFHVGAHVTKFLRLQMLSTSSDKACSTVSDKTNRFALLFGTLDGSIGCIAPLDELTFRRLQSLQKKLGDAVPHVGGLNPRSFRQFHSNGKVHRRGPDSIVDCELLCQ*
Homology
[Close]
BLAST of MELO3C008722 vs. Swiss-Prot
Match: CPSF1_ARATH (Cleavage and polyadenylation specificity factor subunit 1 OS=Arabidopsis thaliana GN=CPSF160 PE=1 SV=2)

HSP 1 Score: 570.1 bits (1468), Expect = 1.7e-161
Identity = 281/358 (78.49%), Postives = 320/358 (89.39%), Query Frame = 1 

Query: 1    MVDQDVGH-VENHNLSADELQQTYSVEEFEIRILEPEKSGGPWQTRATIAMHSSENALTI 60
            +VDQ+ G  ++NHN+S+D+LQ+TY+VEEFEI+ILEPE+SGGPW+T+A I M +SE+ALT+
Sbjct: 1055 LVDQEAGQQLDNHNMSSDDLQRTYTVEEFEIQILEPERSGGPWETKAKIPMQTSEHALTV 1114

Query: 61   RVVTLLNATTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDADNSQTLVSEVYSKELK 120
            RVVTLLNA+T ENETLLAVGTAYVQGEDVAARGRVLLFS GK+ DNSQ +V+EVYS+ELK
Sbjct: 1115 RVVTLLNASTGENETLLAVGTAYVQGEDVAARGRVLLFSFGKNGDNSQNVVTEVYSRELK 1174

Query: 121  GAISALASLQGHLLIASGPKIILHKWTGAELNGIAFYDVPPLYVVSLNIVKNFILLGDIH 180
            GAISA+AS+QGHLLI+SGPKIILHKW G ELNG+AF+D PPLYVVS+N+VK+FILLGD+H
Sbjct: 1175 GAISAVASIQGHLLISSGPKIILHKWNGTELNGVAFFDAPPLYVVSMNVVKSFILLGDVH 1234

Query: 181  KSIYFLSWKEQGAQLSLLAKDFGSLDCYATEFLIDGSTLSLTVSDDQKNIQIFYYAPKST 240
            KSIYFLSWKEQG+QLSLLAKDF SLDC+ATEFLIDGSTLSL VSD+QKNIQ+FYYAPK  
Sbjct: 1235 KSIYFLSWKEQGSQLSLLAKDFESLDCFATEFLIDGSTLSLAVSDEQKNIQVFYYAPKMI 1294

Query: 241  ESWKGQKLLSRAEFHVGAHVTKFLRLQMLSTSSDKACSTVSDKTNRFALLFGTLDGSIGC 300
            ESWKG KLLSRAEFHVGAHV+KFLRLQM+S+         +DK NRFALLFGTLDGS GC
Sbjct: 1295 ESWKGLKLLSRAEFHVGAHVSKFLRLQMVSSG--------ADKINRFALLFGTLDGSFGC 1354

Query: 301  IAPLDELTFRRLQSLQKKLGDAVPHVGGLNPRSFRQFHSNGKVHRRGPDSIVDCELLC 358
            IAPLDE+TFRRLQSLQKKL DAVPHV GLNP +FRQF S+GK  R GPDSIVDCELLC
Sbjct: 1355 IAPLDEVTFRRLQSLQKKLVDAVPHVAGLNPLAFRQFRSSGKARRSGPDSIVDCELLC 1404

[Close]
BLAST of MELO3C008722 vs. Swiss-Prot
Match: CPSF1_ORYSJ (Probable cleavage and polyadenylation specificity factor subunit 1 OS=Oryza sativa subsp. japonica GN=Os04g0252200 PE=3 SV=2)

HSP 1 Score: 534.6 bits (1376), Expect = 8.1e-151
Identity = 274/358 (76.54%), Postives = 303/358 (84.64%), Query Frame = 1 

Query: 1    MVDQD-VGHVENHNLSADELQQTYSVEEFEIRILEPEKSGGPWQTRATIAMHSSENALTI 60
            M DQ+ V H++N   S D L +TY+V+EFE+RILE EK GG W+T++TI M   ENALT+
Sbjct: 1053 MADQESVHHMDNDVTSTDALHKTYTVDEFEVRILELEKPGGHWETKSTIPMQLFENALTV 1112

Query: 61   RVVTLLNATTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDADNSQTLVSEVYSKELK 120
            R+VTL N TTKENETLLA+GTAYV GEDVAARGRVLLFS  K ++NSQ LV+EVYSKE K
Sbjct: 1113 RIVTLHNTTTKENETLLAIGTAYVLGEDVAARGRVLLFSFTK-SENSQNLVTEVYSKESK 1172

Query: 121  GAISALASLQGHLLIASGPKIILHKWTGAELNGIAFYDVPPLYVVSLNIVKNFILLGDIH 180
            GA+SA+ASLQGHLLIASGPKI L+KWTGAEL  +AFYD P L+VVSLNIVKNF+L GDIH
Sbjct: 1173 GAVSAVASLQGHLLIASGPKITLNKWTGAELTAVAFYDAP-LHVVSLNIVKNFVLFGDIH 1232

Query: 181  KSIYFLSWKEQGAQLSLLAKDFGSLDCYATEFLIDGSTLSLTVSDDQKNIQIFYYAPKST 240
            KSIYFLSWKEQG+QLSLLAKDFGSLDC+ATEFLIDGSTLSL  SD  KN+QIFYYAPK  
Sbjct: 1233 KSIYFLSWKEQGSQLSLLAKDFGSLDCFATEFLIDGSTLSLVASDSDKNVQIFYYAPKMV 1292

Query: 241  ESWKGQKLLSRAEFHVGAHVTKFLRLQMLSTSSDKACSTVSDKTNRFALLFGTLDGSIGC 300
            ESWKGQKLLSRAEFHVGAH+TKFLRLQML T         S+KTNRFALLFG LDG IGC
Sbjct: 1293 ESWKGQKLLSRAEFHVGAHITKFLRLQMLPTQ-----GLSSEKTNRFALLFGNLDGGIGC 1352

Query: 301  IAPLDELTFRRLQSLQKKLGDAVPHVGGLNPRSFRQFHSNGKVHRRGPDSIVDCELLC 358
            IAP+DELTFRRLQSLQ+KL DAVPHV GLNPRSFRQFHSNGK HR GPD+I+D ELLC
Sbjct: 1353 IAPIDELTFRRLQSLQRKLVDAVPHVCGLNPRSFRQFHSNGKGHRPGPDNIIDFELLC 1403

[Close]
BLAST of MELO3C008722 vs. Swiss-Prot
Match: CPSF1_MOUSE (Cleavage and polyadenylation specificity factor subunit 1 OS=Mus musculus GN=Cpsf1 PE=1 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 8.6e-52
Identity = 123/339 (36.28%), Postives = 186/339 (54.87%), Query Frame = 1 

Query: 26   EEFEIRILEPEKSGGPWQT--RATIAMHSSENALTIRVVTLLNATTKEN-ETLLAVGTAY 85
            E F I+++ P      W+    A I +   E+   ++ V+L +  T    +  +A GT  
Sbjct: 1070 EAFSIQLISPVS----WEAIPNARIELEEWEHVTCMKTVSLRSEETVSGLKGYVAAGTCL 1129

Query: 86   VQGEDVAARGRVLLFSVGKDA-DNSQTLVSE----VYSKELKGAISALASLQGHLLIASG 145
            +QGE+V  RGR+L+  V +   +  Q L       +Y KE KG ++AL    GHL+ A G
Sbjct: 1130 MQGEEVTCRGRILIMDVIEVVPEPGQPLTKNKFKVLYEKEQKGPVTALCHCNGHLVSAIG 1189

Query: 146  PKIILHKWTGAELNGIAFYDVPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQLSLL 205
             KI L     +EL G+AF D   LY+  +  VKNFIL  D+ KSI  L ++E+   LSL+
Sbjct: 1190 QKIFLWSLRASELTGMAFIDTQ-LYIHQMISVKNFILAADVMKSISLLRYQEESKTLSLV 1249

Query: 206  AKDFGSLDCYATEFLIDGSTLSLTVSDDQKNIQIFYYAPKSTESWKGQKLLSRAEFHVGA 265
            ++D   L+ Y+ +F++D + L   VSD  +N+ ++ Y P++ ES+ G +LL RA+FHVGA
Sbjct: 1250 SRDAKPLEVYSVDFMVDNAQLGFLVSDRDRNLMVYMYLPEAKESFGGMRLLRRADFHVGA 1309

Query: 266  HVTKFLRLQMLSTSSDKACSTVSDKTNRFALLFGTLDGSIGCIAPLDELTFRRLQSLQKK 325
            HV  F R      +   +  +V  + N+    F TLDG IG + P+ E T+RRL  LQ  
Sbjct: 1310 HVNTFWRTPCRGAAEGPSKKSVVWE-NKHITWFATLDGGIGLLLPMQEKTYRRLLMLQNA 1369

Query: 326  LGDAVPHVGGLNPRSFRQFHSNGKVHRRGPDSIVDCELL 357
            L   +PH  GLNPR+FR  H + ++ +    +++D ELL
Sbjct: 1370 LTTMLPHHAGLNPRAFRMLHVDRRILQNAVRNVLDGELL 1402

[Close]
BLAST of MELO3C008722 vs. Swiss-Prot
Match: CPSF1_BOVIN (Cleavage and polyadenylation specificity factor subunit 1 OS=Bos taurus GN=CPSF1 PE=1 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 1.1e-51
Identity = 127/355 (35.77%), Postives = 190/355 (53.52%), Query Frame = 1 

Query: 10   ENHNLSADELQQTYSVEEFEIRILEPEKSGGPWQT--RATIAMHSSENALTIRVVTLLNA 69
            E   +  DE       E F I+++ P      W+    A I +   E+   ++ V+L + 
Sbjct: 1057 EFETIERDERYVHPQQEAFCIQLISPVS----WEAIPNARIELEEWEHVTCMKTVSLRSE 1116

Query: 70   TTKEN-ETLLAVGTAYVQGEDVAARGRVLLFSVGKDA-DNSQTLVSE----VYSKELKGA 129
             T    +  +A GT  +QGE+V  RGR+L+  V +   +  Q L       +Y KE KG 
Sbjct: 1117 ETVSGLKGYVAAGTCLMQGEEVTCRGRILIMDVIEVVPEPGQPLTKNKFKVLYEKEQKGP 1176

Query: 130  ISALASLQGHLLIASGPKIILHKWTGAELNGIAFYDVPPLYVVSLNIVKNFILLGDIHKS 189
            ++AL    GHL+ A G KI L     +EL G+AF D   LY+  +  VKNFIL  D+ KS
Sbjct: 1177 VTALCHCNGHLVSAIGQKIFLWSLRASELTGMAFIDTQ-LYIHQMISVKNFILAADVMKS 1236

Query: 190  IYFLSWKEQGAQLSLLAKDFGSLDCYATEFLIDGSTLSLTVSDDQKNIQIFYYAPKSTES 249
            I  L ++E+   LSL+++D   L+ Y+ +F++D + L   VSD  +N+ ++ Y P++ ES
Sbjct: 1237 ISLLRYQEESKTLSLVSRDAKPLEVYSVDFMVDNAQLGFLVSDRDRNLMVYMYLPEAKES 1296

Query: 250  WKGQKLLSRAEFHVGAHVTKFLRLQMLSTSSDKACSTVSDKTNRFALLFGTLDGSIGCIA 309
            + G +LL RA+FHVGAHV  F R      +   +  +V  + N+    F TLDG IG + 
Sbjct: 1297 FGGMRLLRRADFHVGAHVNTFWRTPCRGAAEGPSKKSVVWE-NKHITWFATLDGGIGLLL 1356

Query: 310  PLDELTFRRLQSLQKKLGDAVPHVGGLNPRSFRQFHSNGKVHRRGPDSIVDCELL 357
            P+ E T+RRL  LQ  L   +PH  GLNPR+FR  H + +V +    +++D ELL
Sbjct: 1357 PMQEKTYRRLLMLQNALTTMLPHHAGLNPRAFRMLHVDRRVLQNAVRNVLDGELL 1405

[Close]
BLAST of MELO3C008722 vs. Swiss-Prot
Match: CPSF1_HUMAN (Cleavage and polyadenylation specificity factor subunit 1 OS=Homo sapiens GN=CPSF1 PE=1 SV=2)

HSP 1 Score: 204.5 bits (519), Expect = 1.9e-51
Identity = 129/359 (35.93%), Postives = 190/359 (52.92%), Query Frame = 1 

Query: 10   ENHNLSADELQQTYSVEEFEIRILEPEKSGGPWQT--RATIAMHSSENALTIRVVTLLNA 69
            E   +  DE       E F I+++ P      W+    A I +   E+   ++ V+L + 
Sbjct: 1056 EFETIERDERYIHPQQEAFSIQLISPVS----WEAIPNARIELQEWEHVTCMKTVSLRSE 1115

Query: 70   TTKEN-ETLLAVGTAYVQGEDVAARGRVLLFSVGKDA-DNSQTLVSE----VYSKELKGA 129
             T    +  +A GT  +QGE+V  RGR+L+  V +   +  Q L       +Y KE KG 
Sbjct: 1116 ETVSGLKGYVAAGTCLMQGEEVTCRGRILIMDVIEVVPEPGQPLTKNKFKVLYEKEQKGP 1175

Query: 130  ISALASLQGHLLIASGPKIILHKWTGAELNGIAFYDVPPLYVVSLNIVKNFILLGDIHKS 189
            ++AL    GHL+ A G KI L     +EL G+AF D   LY+  +  VKNFIL  D+ KS
Sbjct: 1176 VTALCHCNGHLVSAIGQKIFLWSLRASELTGMAFIDTQ-LYIHQMISVKNFILAADVMKS 1235

Query: 190  IYFLSWKEQGAQLSLLAKDFGSLDCYATEFLIDGSTLSLTVSDDQKNIQIFYYAPKSTES 249
            I  L ++E+   LSL+++D   L+ Y+ +F++D + L   VSD  +N+ ++ Y P++ ES
Sbjct: 1236 ISLLRYQEESKTLSLVSRDAKPLEVYSVDFMVDNAQLGFLVSDRDRNLMVYMYLPEAKES 1295

Query: 250  WKGQKLLSRAEFHVGAHVTKFLRLQMLSTSSDKACSTVSDKT----NRFALLFGTLDGSI 309
            + G +LL RA+FHVGAHV  F R     T    A   +S K+    N+    F TLDG I
Sbjct: 1296 FGGMRLLRRADFHVGAHVNTFWR-----TPCRGATEGLSKKSVVWENKHITWFATLDGGI 1355

Query: 310  GCIAPLDELTFRRLQSLQKKLGDAVPHVGGLNPRSFRQFHSNGKVHRRGPDSIVDCELL 357
            G + P+ E T+RRL  LQ  L   +PH  GLNPR+FR  H + +  +    +++D ELL
Sbjct: 1356 GLLLPMQEKTYRRLLMLQNALTTMLPHHAGLNPRAFRMLHVDRRTLQNAVRNVLDGELL 1404

[Close]
BLAST of MELO3C008722 vs. TrEMBL
Match: A0A0A0LKI9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G074280 PE=4 SV=1)

HSP 1 Score: 706.1 bits (1821), Expect = 2.2e-200
Identity = 356/357 (99.72%), Postives = 356/357 (99.72%), Query Frame = 1 

Query: 1    MVDQDVGHVENHNLSADELQQTYSVEEFEIRILEPEKSGGPWQTRATIAMHSSENALTIR 60
            MVDQDVGHVENHNLSADELQQTYSVEEFEIRILEPEKSGGPWQTRATIAMHSSENALTIR
Sbjct: 1058 MVDQDVGHVENHNLSADELQQTYSVEEFEIRILEPEKSGGPWQTRATIAMHSSENALTIR 1117

Query: 61   VVTLLNATTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDADNSQTLVSEVYSKELKG 120
            VVTLLN TTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDADNSQTLVSEVYSKELKG
Sbjct: 1118 VVTLLNTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDADNSQTLVSEVYSKELKG 1177

Query: 121  AISALASLQGHLLIASGPKIILHKWTGAELNGIAFYDVPPLYVVSLNIVKNFILLGDIHK 180
            AISALASLQGHLLIASGPKIILHKWTGAELNGIAFYDVPPLYVVSLNIVKNFILLGDIHK
Sbjct: 1178 AISALASLQGHLLIASGPKIILHKWTGAELNGIAFYDVPPLYVVSLNIVKNFILLGDIHK 1237

Query: 181  SIYFLSWKEQGAQLSLLAKDFGSLDCYATEFLIDGSTLSLTVSDDQKNIQIFYYAPKSTE 240
            SIYFLSWKEQGAQLSLLAKDFGSLDCYATEFLIDGSTLSLTVSDDQKNIQIFYYAPKSTE
Sbjct: 1238 SIYFLSWKEQGAQLSLLAKDFGSLDCYATEFLIDGSTLSLTVSDDQKNIQIFYYAPKSTE 1297

Query: 241  SWKGQKLLSRAEFHVGAHVTKFLRLQMLSTSSDKACSTVSDKTNRFALLFGTLDGSIGCI 300
            SWKGQKLLSRAEFHVGAHVTKFLRLQMLSTSSDKACSTVSDKTNRFALLFGTLDGSIGCI
Sbjct: 1298 SWKGQKLLSRAEFHVGAHVTKFLRLQMLSTSSDKACSTVSDKTNRFALLFGTLDGSIGCI 1357

Query: 301  APLDELTFRRLQSLQKKLGDAVPHVGGLNPRSFRQFHSNGKVHRRGPDSIVDCELLC 358
            APLDELTFRRLQSLQKKLGDAVPHVGGLNPRSFRQFHSNGKVHRRGPDSIVDCELLC
Sbjct: 1358 APLDELTFRRLQSLQKKLGDAVPHVGGLNPRSFRQFHSNGKVHRRGPDSIVDCELLC 1414

[Close]
BLAST of MELO3C008722 vs. TrEMBL
Match: A0A061FZK0_THECC (Cleavage and polyadenylation specificity factor 160 isoform 2 OS=Theobroma cacao GN=TCM_014995 PE=4 SV=1)

HSP 1 Score: 628.6 bits (1620), Expect = 4.6e-177
Identity = 312/359 (86.91%), Postives = 338/359 (94.15%), Query Frame = 1 

Query: 1    MVDQDVGH-VENHNLSADELQQTYSVEEFEIRILEPEKSGGPWQTRATIAMHSSENALTI 60
            +VDQ+VGH ++NHNLS+DELQ+TY+V+EFE+RILEPEKSGGPW+T+ATI M SSENALT+
Sbjct: 861  LVDQEVGHQMDNHNLSSDELQRTYTVDEFEVRILEPEKSGGPWETKATIPMQSSENALTV 920

Query: 61   RVVTLLNATTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDADNSQTLVSEVYSKELK 120
            RVVTL N TTKENE+LLA+GTAY+QGEDVAARGRV+L S+G++ DN Q LVSEVYSKELK
Sbjct: 921  RVVTLFNTTTKENESLLAIGTAYIQGEDVAARGRVILCSIGRNTDNLQNLVSEVYSKELK 980

Query: 121  GAISALASLQGHLLIASGPKIILHKWTGAELNGIAFYDVPPLYVVSLNIVKNFILLGDIH 180
            GAISALASLQGHLLIASGPKIILH WTG+ELNGIAFYD PPLYVVSLNIVKNFILLGD+H
Sbjct: 981  GAISALASLQGHLLIASGPKIILHNWTGSELNGIAFYDAPPLYVVSLNIVKNFILLGDVH 1040

Query: 181  KSIYFLSWKEQGAQLSLLAKDFGSLDCYATEFLIDGSTLSLTVSDDQKNIQIFYYAPKST 240
            KSIYFLSWKEQGAQLSLLAKDFGSLDC+ATEFLIDGSTLSL VSD+QKNIQIFYYAPK +
Sbjct: 1041 KSIYFLSWKEQGAQLSLLAKDFGSLDCFATEFLIDGSTLSLMVSDEQKNIQIFYYAPKMS 1100

Query: 241  ESWKGQKLLSRAEFHVGAHVTKFLRLQMLSTSSDKACSTV-SDKTNRFALLFGTLDGSIG 300
            ESWKGQKLLSRAEFHVGAHVTKFLRLQMLSTSSD+  +T  SDKTNRFALLFGTLDGSIG
Sbjct: 1101 ESWKGQKLLSRAEFHVGAHVTKFLRLQMLSTSSDRTSATAGSDKTNRFALLFGTLDGSIG 1160

Query: 301  CIAPLDELTFRRLQSLQKKLGDAVPHVGGLNPRSFRQFHSNGKVHRRGPDSIVDCELLC 358
            CIAPLDELTFRRLQSLQKKL DAVPHV GLNPRSFRQFHSNGK HR GPDSIVDCELLC
Sbjct: 1161 CIAPLDELTFRRLQSLQKKLVDAVPHVAGLNPRSFRQFHSNGKAHRPGPDSIVDCELLC 1219

[Close]
BLAST of MELO3C008722 vs. TrEMBL
Match: A0A061G7F2_THECC (Cleavage and polyadenylation specificity factor 160 isoform 1 OS=Theobroma cacao GN=TCM_014995 PE=4 SV=1)

HSP 1 Score: 628.6 bits (1620), Expect = 4.6e-177
Identity = 312/359 (86.91%), Postives = 338/359 (94.15%), Query Frame = 1 

Query: 1    MVDQDVGH-VENHNLSADELQQTYSVEEFEIRILEPEKSGGPWQTRATIAMHSSENALTI 60
            +VDQ+VGH ++NHNLS+DELQ+TY+V+EFE+RILEPEKSGGPW+T+ATI M SSENALT+
Sbjct: 1061 LVDQEVGHQMDNHNLSSDELQRTYTVDEFEVRILEPEKSGGPWETKATIPMQSSENALTV 1120

Query: 61   RVVTLLNATTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDADNSQTLVSEVYSKELK 120
            RVVTL N TTKENE+LLA+GTAY+QGEDVAARGRV+L S+G++ DN Q LVSEVYSKELK
Sbjct: 1121 RVVTLFNTTTKENESLLAIGTAYIQGEDVAARGRVILCSIGRNTDNLQNLVSEVYSKELK 1180

Query: 121  GAISALASLQGHLLIASGPKIILHKWTGAELNGIAFYDVPPLYVVSLNIVKNFILLGDIH 180
            GAISALASLQGHLLIASGPKIILH WTG+ELNGIAFYD PPLYVVSLNIVKNFILLGD+H
Sbjct: 1181 GAISALASLQGHLLIASGPKIILHNWTGSELNGIAFYDAPPLYVVSLNIVKNFILLGDVH 1240

Query: 181  KSIYFLSWKEQGAQLSLLAKDFGSLDCYATEFLIDGSTLSLTVSDDQKNIQIFYYAPKST 240
            KSIYFLSWKEQGAQLSLLAKDFGSLDC+ATEFLIDGSTLSL VSD+QKNIQIFYYAPK +
Sbjct: 1241 KSIYFLSWKEQGAQLSLLAKDFGSLDCFATEFLIDGSTLSLMVSDEQKNIQIFYYAPKMS 1300

Query: 241  ESWKGQKLLSRAEFHVGAHVTKFLRLQMLSTSSDKACSTV-SDKTNRFALLFGTLDGSIG 300
            ESWKGQKLLSRAEFHVGAHVTKFLRLQMLSTSSD+  +T  SDKTNRFALLFGTLDGSIG
Sbjct: 1301 ESWKGQKLLSRAEFHVGAHVTKFLRLQMLSTSSDRTSATAGSDKTNRFALLFGTLDGSIG 1360

Query: 301  CIAPLDELTFRRLQSLQKKLGDAVPHVGGLNPRSFRQFHSNGKVHRRGPDSIVDCELLC 358
            CIAPLDELTFRRLQSLQKKL DAVPHV GLNPRSFRQFHSNGK HR GPDSIVDCELLC
Sbjct: 1361 CIAPLDELTFRRLQSLQKKLVDAVPHVAGLNPRSFRQFHSNGKAHRPGPDSIVDCELLC 1419

[Close]
BLAST of MELO3C008722 vs. TrEMBL
Match: F6HAK2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0022g01860 PE=4 SV=1)

HSP 1 Score: 622.5 bits (1604), Expect = 3.3e-175
Identity = 311/360 (86.39%), Postives = 334/360 (92.78%), Query Frame = 1 

Query: 1    MVDQDVGH-VENHNLSADELQQTYSVEEFEIRILEPEKSGGPWQTRATIAMHSSENALTI 60
            +VDQ+ GH +EN NLS+DEL ++YSV+EFE+R+LEPEKSG PWQTRATI M SSENALT+
Sbjct: 1046 LVDQEAGHQLENDNLSSDELHRSYSVDEFEVRVLEPEKSGAPWQTRATIPMQSSENALTV 1105

Query: 61   RVVTLLNATTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDADNSQTLVSEVYSKELK 120
            RVVTL N TTKENETLLA+GTAYVQGEDVAARGRVLLFSVGK+ DNSQ LVSE+YSKELK
Sbjct: 1106 RVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSVGKNTDNSQNLVSEIYSKELK 1165

Query: 121  GAISALASLQGHLLIASGPKIILHKWTGAELNGIAFYDVPPLYVVSLNIVKNFILLGDIH 180
            GAISA+ASLQGHLLIASGPKIILHKWTG ELNG+AF+D PPLYVVSLNIVKNFILLGDIH
Sbjct: 1166 GAISAVASLQGHLLIASGPKIILHKWTGTELNGVAFFDAPPLYVVSLNIVKNFILLGDIH 1225

Query: 181  KSIYFLSWKEQGAQLSLLAKDFGSLDCYATEFLIDGSTLSLTVSDDQKNIQIFYYAPKST 240
            +SIYFLSWKEQGAQL+LLAKDFGSLDC+ATEFLIDGSTLSL VSDDQKNIQIFYYAPK +
Sbjct: 1226 RSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLIVSDDQKNIQIFYYAPKMS 1285

Query: 241  ESWKGQKLLSRAEFHVGAHVTKFLRLQMLSTSSDKACSTV-SDKTNRFALLFGTLDGSIG 300
            ESWKGQKLLSRAEFHVGAHVTKFLRLQML  SSD+  +T  SDKTNRFALLFGTLDGSIG
Sbjct: 1286 ESWKGQKLLSRAEFHVGAHVTKFLRLQMLPASSDRTSATQGSDKTNRFALLFGTLDGSIG 1345

Query: 301  CIAPLDELTFRRLQSLQKKLGDAVPHVGGLNPRSFRQFHSNGKVHRRGPDSIVDCELLCQ 359
            CIAPLDELTFRRLQSLQKKL DAVPHV GLNPRSFRQF SNGK HR GPD+IVDCELLCQ
Sbjct: 1346 CIAPLDELTFRRLQSLQKKLVDAVPHVAGLNPRSFRQFRSNGKAHRPGPDNIVDCELLCQ 1405

[Close]
BLAST of MELO3C008722 vs. TrEMBL
Match: A0A067FDF3_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0005452mg PE=4 SV=1)

HSP 1 Score: 619.0 bits (1595), Expect = 3.6e-174
Identity = 308/358 (86.03%), Postives = 335/358 (93.58%), Query Frame = 1 

Query: 1   MVDQDVGH-VENHNLSADELQQTYSVEEFEIRILEPEKSGGPWQTRATIAMHSSENALTI 60
           ++DQ+VGH ++NHNLS+ +L +TY+VEE+E+RILEP+++GGPWQTRATI M SSENALT+
Sbjct: 494 LIDQEVGHQIDNHNLSSVDLHRTYTVEEYEVRILEPDRAGGPWQTRATIPMQSSENALTV 553

Query: 61  RVVTLLNATTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDADNSQTLVSEVYSKELK 120
           RVVTL N TTKENETLLA+GTAYVQGEDVAARGRVLLFS G++ADN Q LV+EVYSKELK
Sbjct: 554 RVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELK 613

Query: 121 GAISALASLQGHLLIASGPKIILHKWTGAELNGIAFYDVPPLYVVSLNIVKNFILLGDIH 180
           GAISALASLQGHLLIASGPKIILHKWTG ELNGIAFYD PPLYVVSLNIVKNFILLGDIH
Sbjct: 614 GAISALASLQGHLLIASGPKIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFILLGDIH 673

Query: 181 KSIYFLSWKEQGAQLSLLAKDFGSLDCYATEFLIDGSTLSLTVSDDQKNIQIFYYAPKST 240
           KSIYFLSWKEQGAQL+LLAKDFGSLDC+ATEFLIDGSTLSL VSD+QKNIQIFYYAPK +
Sbjct: 674 KSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMS 733

Query: 241 ESWKGQKLLSRAEFHVGAHVTKFLRLQMLSTSSDK-ACSTVSDKTNRFALLFGTLDGSIG 300
           ESWKGQKLLSRAEFHVGAHVTKFLRLQML+TSSD+   +  SDKTNRFALLFGTLDGSIG
Sbjct: 734 ESWKGQKLLSRAEFHVGAHVTKFLRLQMLATSSDRTGAAPGSDKTNRFALLFGTLDGSIG 793

Query: 301 CIAPLDELTFRRLQSLQKKLGDAVPHVGGLNPRSFRQFHSNGKVHRRGPDSIVDCELL 357
           CIAPLDELTFRRLQSLQKKL D+VPHV GLNPRSFRQFHSNGK HR GPDSIVDCELL
Sbjct: 794 CIAPLDELTFRRLQSLQKKLVDSVPHVAGLNPRSFRQFHSNGKAHRPGPDSIVDCELL 851

[Close]
BLAST of MELO3C008722 vs. TAIR10
Match: AT5G51660.1 (AT5G51660.1 cleavage and polyadenylation specificity factor 160)

HSP 1 Score: 570.1 bits (1468), Expect = 9.8e-163
Identity = 281/358 (78.49%), Postives = 320/358 (89.39%), Query Frame = 1 

Query: 1    MVDQDVGH-VENHNLSADELQQTYSVEEFEIRILEPEKSGGPWQTRATIAMHSSENALTI 60
            +VDQ+ G  ++NHN+S+D+LQ+TY+VEEFEI+ILEPE+SGGPW+T+A I M +SE+ALT+
Sbjct: 1055 LVDQEAGQQLDNHNMSSDDLQRTYTVEEFEIQILEPERSGGPWETKAKIPMQTSEHALTV 1114

Query: 61   RVVTLLNATTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDADNSQTLVSEVYSKELK 120
            RVVTLLNA+T ENETLLAVGTAYVQGEDVAARGRVLLFS GK+ DNSQ +V+EVYS+ELK
Sbjct: 1115 RVVTLLNASTGENETLLAVGTAYVQGEDVAARGRVLLFSFGKNGDNSQNVVTEVYSRELK 1174

Query: 121  GAISALASLQGHLLIASGPKIILHKWTGAELNGIAFYDVPPLYVVSLNIVKNFILLGDIH 180
            GAISA+AS+QGHLLI+SGPKIILHKW G ELNG+AF+D PPLYVVS+N+VK+FILLGD+H
Sbjct: 1175 GAISAVASIQGHLLISSGPKIILHKWNGTELNGVAFFDAPPLYVVSMNVVKSFILLGDVH 1234

Query: 181  KSIYFLSWKEQGAQLSLLAKDFGSLDCYATEFLIDGSTLSLTVSDDQKNIQIFYYAPKST 240
            KSIYFLSWKEQG+QLSLLAKDF SLDC+ATEFLIDGSTLSL VSD+QKNIQ+FYYAPK  
Sbjct: 1235 KSIYFLSWKEQGSQLSLLAKDFESLDCFATEFLIDGSTLSLAVSDEQKNIQVFYYAPKMI 1294

Query: 241  ESWKGQKLLSRAEFHVGAHVTKFLRLQMLSTSSDKACSTVSDKTNRFALLFGTLDGSIGC 300
            ESWKG KLLSRAEFHVGAHV+KFLRLQM+S+         +DK NRFALLFGTLDGS GC
Sbjct: 1295 ESWKGLKLLSRAEFHVGAHVSKFLRLQMVSSG--------ADKINRFALLFGTLDGSFGC 1354

Query: 301  IAPLDELTFRRLQSLQKKLGDAVPHVGGLNPRSFRQFHSNGKVHRRGPDSIVDCELLC 358
            IAPLDE+TFRRLQSLQKKL DAVPHV GLNP +FRQF S+GK  R GPDSIVDCELLC
Sbjct: 1355 IAPLDEVTFRRLQSLQKKLVDAVPHVAGLNPLAFRQFRSSGKARRSGPDSIVDCELLC 1404

[Close]
BLAST of MELO3C008722 vs. TAIR10
Match: AT4G05420.1 (AT4G05420.1 damaged DNA binding protein 1A)

HSP 1 Score: 90.1 bits (222), Expect = 3.0e-18
Identity = 80/278 (28.78%), Postives = 131/278 (47.12%), Query Frame = 1 

Query: 69   TKENETLLAVGTAYVQGED-VAARGRVLLFSVGKDADNSQTLVSEVYSKELKGAISALAS 128
            T++      VGTAYV  E+    +GR+L+F V    D    L++E   KE KGA+ +L +
Sbjct: 777  TEDKNVYYCVGTAYVLPEENEPTKGRILVFIV---EDGRLQLIAE---KETKGAVYSLNA 836

Query: 129  LQGHLLIASGPKIILHKWT-----GAELNGIAFY--DVPPLYVVSLNIVKNFILLGDIHK 188
              G LL A   KI L+KW        EL     +   +  LYV +     +FI++GD+ K
Sbjct: 837  FNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRG---DFIVVGDLMK 896

Query: 189  SIYFLSWKEQGAQLSLLAKDFGSLDCYATEFLIDGSTLSLTVSDDQKNIQIFYYAPKSTE 248
            SI  L +K +   +   A+D+ +    A E L D   + L   ++   + +   +  +T+
Sbjct: 897  SISLLLYKHEEGAIEERARDYNANWMSAVEILDD--DIYLGAENNFNLLTVKKNSEGATD 956

Query: 249  SWKGQKLLSRAEFHVGAHVTKFLRLQMLSTSSDKACSTVSDKTNRFALLFGTLDGSIGCI 308
              +G +L    E+H+G  V +F    ++    D     +        ++FGT++G IG I
Sbjct: 957  EERG-RLEVVGEYHLGEFVNRFRHGSLVMRLPDSEIGQIP------TVIFGTVNGVIGVI 1016

Query: 309  APLDELTFRRLQSLQKKLGDAVPHVGGLNPRSFRQFHS 339
            A L +  +  L+ LQ  L   +  VGGL+   +R F++
Sbjct: 1017 ASLPQEQYTFLEKLQSSLRKVIKGVGGLSHEQWRSFNN 1036

[Close]
BLAST of MELO3C008722 vs. TAIR10
Match: AT4G21100.1 (AT4G21100.1 damaged DNA binding protein 1B)

HSP 1 Score: 84.7 bits (208), Expect = 1.2e-16
Identity = 80/278 (28.78%), Postives = 125/278 (44.96%), Query Frame = 1 

Query: 69   TKENETLLAVGTAYVQGED-VAARGRVLLFSVGKDADNSQTLVSEVYSKELKGAISALAS 128
            T +      VGTAYV  E+    +GR+L+F V    +    L++E   KE KGA+ +L +
Sbjct: 777  TDDKNVYYCVGTAYVLPEENEPTKGRILVFIV---EEGRLQLITE---KETKGAVYSLNA 836

Query: 129  LQGHLLIASGPKIILHKWT-----GAELNGIAFY--DVPPLYVVSLNIVKNFILLGDIHK 188
              G LL +   KI L+KW        EL     +   +  LYV +     +FI +GD+ K
Sbjct: 837  FNGKLLASINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRG---DFIAVGDLMK 896

Query: 189  SIYFLSWKEQGAQLSLLAKDFGSLDCYATEFLIDGSTLSLTVSDDQKNIQIFYYAPKSTE 248
            SI  L +K +   +   A+D+ +    A E L D   L    +D+  NI       +   
Sbjct: 897  SISLLIYKHEEGAIEERARDYNANWMTAVEILNDDIYLG---TDNCFNIFTVKKNNEGAT 956

Query: 249  SWKGQKLLSRAEFHVGAHVTKFLRLQMLSTSSDKACSTVSDKTNRFALLFGTLDGSIGCI 308
              +  ++    E+H+G  V +F    ++    D      SD      ++FGT+ G IG I
Sbjct: 957  DEERARMEVVGEYHIGEFVNRFRHGSLVMKLPD------SDIGQIPTVIFGTVSGMIGVI 1016

Query: 309  APLDELTFRRLQSLQKKLGDAVPHVGGLNPRSFRQFHS 339
            A L +  +  L+ LQ  L   +  VGGL+   +R F++
Sbjct: 1017 ASLPQEQYAFLEKLQTSLRKVIKGVGGLSHEQWRSFNN 1036

[Close]
BLAST of MELO3C008722 vs. NCBI nr
Match: gi|659082456|ref|XP_008441850.1| (PREDICTED: cleavage and polyadenylation specificity factor subunit 1 isoform X1 [Cucumis melo])

HSP 1 Score: 707.6 bits (1825), Expect = 1.1e-200
Identity = 357/357 (100.00%), Postives = 357/357 (100.00%), Query Frame = 1 

Query: 1    MVDQDVGHVENHNLSADELQQTYSVEEFEIRILEPEKSGGPWQTRATIAMHSSENALTIR 60
            MVDQDVGHVENHNLSADELQQTYSVEEFEIRILEPEKSGGPWQTRATIAMHSSENALTIR
Sbjct: 1058 MVDQDVGHVENHNLSADELQQTYSVEEFEIRILEPEKSGGPWQTRATIAMHSSENALTIR 1117

Query: 61   VVTLLNATTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDADNSQTLVSEVYSKELKG 120
            VVTLLNATTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDADNSQTLVSEVYSKELKG
Sbjct: 1118 VVTLLNATTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDADNSQTLVSEVYSKELKG 1177

Query: 121  AISALASLQGHLLIASGPKIILHKWTGAELNGIAFYDVPPLYVVSLNIVKNFILLGDIHK 180
            AISALASLQGHLLIASGPKIILHKWTGAELNGIAFYDVPPLYVVSLNIVKNFILLGDIHK
Sbjct: 1178 AISALASLQGHLLIASGPKIILHKWTGAELNGIAFYDVPPLYVVSLNIVKNFILLGDIHK 1237

Query: 181  SIYFLSWKEQGAQLSLLAKDFGSLDCYATEFLIDGSTLSLTVSDDQKNIQIFYYAPKSTE 240
            SIYFLSWKEQGAQLSLLAKDFGSLDCYATEFLIDGSTLSLTVSDDQKNIQIFYYAPKSTE
Sbjct: 1238 SIYFLSWKEQGAQLSLLAKDFGSLDCYATEFLIDGSTLSLTVSDDQKNIQIFYYAPKSTE 1297

Query: 241  SWKGQKLLSRAEFHVGAHVTKFLRLQMLSTSSDKACSTVSDKTNRFALLFGTLDGSIGCI 300
            SWKGQKLLSRAEFHVGAHVTKFLRLQMLSTSSDKACSTVSDKTNRFALLFGTLDGSIGCI
Sbjct: 1298 SWKGQKLLSRAEFHVGAHVTKFLRLQMLSTSSDKACSTVSDKTNRFALLFGTLDGSIGCI 1357

Query: 301  APLDELTFRRLQSLQKKLGDAVPHVGGLNPRSFRQFHSNGKVHRRGPDSIVDCELLC 358
            APLDELTFRRLQSLQKKLGDAVPHVGGLNPRSFRQFHSNGKVHRRGPDSIVDCELLC
Sbjct: 1358 APLDELTFRRLQSLQKKLGDAVPHVGGLNPRSFRQFHSNGKVHRRGPDSIVDCELLC 1414

[Close]
BLAST of MELO3C008722 vs. NCBI nr
Match: gi|659082458|ref|XP_008441851.1| (PREDICTED: cleavage and polyadenylation specificity factor subunit 1 isoform X2 [Cucumis melo])

HSP 1 Score: 707.6 bits (1825), Expect = 1.1e-200
Identity = 357/357 (100.00%), Postives = 357/357 (100.00%), Query Frame = 1 

Query: 1    MVDQDVGHVENHNLSADELQQTYSVEEFEIRILEPEKSGGPWQTRATIAMHSSENALTIR 60
            MVDQDVGHVENHNLSADELQQTYSVEEFEIRILEPEKSGGPWQTRATIAMHSSENALTIR
Sbjct: 819  MVDQDVGHVENHNLSADELQQTYSVEEFEIRILEPEKSGGPWQTRATIAMHSSENALTIR 878

Query: 61   VVTLLNATTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDADNSQTLVSEVYSKELKG 120
            VVTLLNATTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDADNSQTLVSEVYSKELKG
Sbjct: 879  VVTLLNATTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDADNSQTLVSEVYSKELKG 938

Query: 121  AISALASLQGHLLIASGPKIILHKWTGAELNGIAFYDVPPLYVVSLNIVKNFILLGDIHK 180
            AISALASLQGHLLIASGPKIILHKWTGAELNGIAFYDVPPLYVVSLNIVKNFILLGDIHK
Sbjct: 939  AISALASLQGHLLIASGPKIILHKWTGAELNGIAFYDVPPLYVVSLNIVKNFILLGDIHK 998

Query: 181  SIYFLSWKEQGAQLSLLAKDFGSLDCYATEFLIDGSTLSLTVSDDQKNIQIFYYAPKSTE 240
            SIYFLSWKEQGAQLSLLAKDFGSLDCYATEFLIDGSTLSLTVSDDQKNIQIFYYAPKSTE
Sbjct: 999  SIYFLSWKEQGAQLSLLAKDFGSLDCYATEFLIDGSTLSLTVSDDQKNIQIFYYAPKSTE 1058

Query: 241  SWKGQKLLSRAEFHVGAHVTKFLRLQMLSTSSDKACSTVSDKTNRFALLFGTLDGSIGCI 300
            SWKGQKLLSRAEFHVGAHVTKFLRLQMLSTSSDKACSTVSDKTNRFALLFGTLDGSIGCI
Sbjct: 1059 SWKGQKLLSRAEFHVGAHVTKFLRLQMLSTSSDKACSTVSDKTNRFALLFGTLDGSIGCI 1118

Query: 301  APLDELTFRRLQSLQKKLGDAVPHVGGLNPRSFRQFHSNGKVHRRGPDSIVDCELLC 358
            APLDELTFRRLQSLQKKLGDAVPHVGGLNPRSFRQFHSNGKVHRRGPDSIVDCELLC
Sbjct: 1119 APLDELTFRRLQSLQKKLGDAVPHVGGLNPRSFRQFHSNGKVHRRGPDSIVDCELLC 1175

[Close]
BLAST of MELO3C008722 vs. NCBI nr
Match: gi|778667872|ref|XP_011648998.1| (PREDICTED: cleavage and polyadenylation specificity factor subunit 1 [Cucumis sativus])

HSP 1 Score: 706.1 bits (1821), Expect = 3.2e-200
Identity = 356/357 (99.72%), Postives = 356/357 (99.72%), Query Frame = 1 

Query: 1    MVDQDVGHVENHNLSADELQQTYSVEEFEIRILEPEKSGGPWQTRATIAMHSSENALTIR 60
            MVDQDVGHVENHNLSADELQQTYSVEEFEIRILEPEKSGGPWQTRATIAMHSSENALTIR
Sbjct: 1058 MVDQDVGHVENHNLSADELQQTYSVEEFEIRILEPEKSGGPWQTRATIAMHSSENALTIR 1117

Query: 61   VVTLLNATTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDADNSQTLVSEVYSKELKG 120
            VVTLLN TTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDADNSQTLVSEVYSKELKG
Sbjct: 1118 VVTLLNTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDADNSQTLVSEVYSKELKG 1177

Query: 121  AISALASLQGHLLIASGPKIILHKWTGAELNGIAFYDVPPLYVVSLNIVKNFILLGDIHK 180
            AISALASLQGHLLIASGPKIILHKWTGAELNGIAFYDVPPLYVVSLNIVKNFILLGDIHK
Sbjct: 1178 AISALASLQGHLLIASGPKIILHKWTGAELNGIAFYDVPPLYVVSLNIVKNFILLGDIHK 1237

Query: 181  SIYFLSWKEQGAQLSLLAKDFGSLDCYATEFLIDGSTLSLTVSDDQKNIQIFYYAPKSTE 240
            SIYFLSWKEQGAQLSLLAKDFGSLDCYATEFLIDGSTLSLTVSDDQKNIQIFYYAPKSTE
Sbjct: 1238 SIYFLSWKEQGAQLSLLAKDFGSLDCYATEFLIDGSTLSLTVSDDQKNIQIFYYAPKSTE 1297

Query: 241  SWKGQKLLSRAEFHVGAHVTKFLRLQMLSTSSDKACSTVSDKTNRFALLFGTLDGSIGCI 300
            SWKGQKLLSRAEFHVGAHVTKFLRLQMLSTSSDKACSTVSDKTNRFALLFGTLDGSIGCI
Sbjct: 1298 SWKGQKLLSRAEFHVGAHVTKFLRLQMLSTSSDKACSTVSDKTNRFALLFGTLDGSIGCI 1357

Query: 301  APLDELTFRRLQSLQKKLGDAVPHVGGLNPRSFRQFHSNGKVHRRGPDSIVDCELLC 358
            APLDELTFRRLQSLQKKLGDAVPHVGGLNPRSFRQFHSNGKVHRRGPDSIVDCELLC
Sbjct: 1358 APLDELTFRRLQSLQKKLGDAVPHVGGLNPRSFRQFHSNGKVHRRGPDSIVDCELLC 1414

[Close]
BLAST of MELO3C008722 vs. NCBI nr
Match: gi|590671948|ref|XP_007038473.1| (Cleavage and polyadenylation specificity factor 160 isoform 1 [Theobroma cacao])

HSP 1 Score: 628.6 bits (1620), Expect = 6.6e-177
Identity = 312/359 (86.91%), Postives = 338/359 (94.15%), Query Frame = 1 

Query: 1    MVDQDVGH-VENHNLSADELQQTYSVEEFEIRILEPEKSGGPWQTRATIAMHSSENALTI 60
            +VDQ+VGH ++NHNLS+DELQ+TY+V+EFE+RILEPEKSGGPW+T+ATI M SSENALT+
Sbjct: 1061 LVDQEVGHQMDNHNLSSDELQRTYTVDEFEVRILEPEKSGGPWETKATIPMQSSENALTV 1120

Query: 61   RVVTLLNATTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDADNSQTLVSEVYSKELK 120
            RVVTL N TTKENE+LLA+GTAY+QGEDVAARGRV+L S+G++ DN Q LVSEVYSKELK
Sbjct: 1121 RVVTLFNTTTKENESLLAIGTAYIQGEDVAARGRVILCSIGRNTDNLQNLVSEVYSKELK 1180

Query: 121  GAISALASLQGHLLIASGPKIILHKWTGAELNGIAFYDVPPLYVVSLNIVKNFILLGDIH 180
            GAISALASLQGHLLIASGPKIILH WTG+ELNGIAFYD PPLYVVSLNIVKNFILLGD+H
Sbjct: 1181 GAISALASLQGHLLIASGPKIILHNWTGSELNGIAFYDAPPLYVVSLNIVKNFILLGDVH 1240

Query: 181  KSIYFLSWKEQGAQLSLLAKDFGSLDCYATEFLIDGSTLSLTVSDDQKNIQIFYYAPKST 240
            KSIYFLSWKEQGAQLSLLAKDFGSLDC+ATEFLIDGSTLSL VSD+QKNIQIFYYAPK +
Sbjct: 1241 KSIYFLSWKEQGAQLSLLAKDFGSLDCFATEFLIDGSTLSLMVSDEQKNIQIFYYAPKMS 1300

Query: 241  ESWKGQKLLSRAEFHVGAHVTKFLRLQMLSTSSDKACSTV-SDKTNRFALLFGTLDGSIG 300
            ESWKGQKLLSRAEFHVGAHVTKFLRLQMLSTSSD+  +T  SDKTNRFALLFGTLDGSIG
Sbjct: 1301 ESWKGQKLLSRAEFHVGAHVTKFLRLQMLSTSSDRTSATAGSDKTNRFALLFGTLDGSIG 1360

Query: 301  CIAPLDELTFRRLQSLQKKLGDAVPHVGGLNPRSFRQFHSNGKVHRRGPDSIVDCELLC 358
            CIAPLDELTFRRLQSLQKKL DAVPHV GLNPRSFRQFHSNGK HR GPDSIVDCELLC
Sbjct: 1361 CIAPLDELTFRRLQSLQKKLVDAVPHVAGLNPRSFRQFHSNGKAHRPGPDSIVDCELLC 1419

[Close]
BLAST of MELO3C008722 vs. NCBI nr
Match: gi|590671952|ref|XP_007038474.1| (Cleavage and polyadenylation specificity factor 160 isoform 2 [Theobroma cacao])

HSP 1 Score: 628.6 bits (1620), Expect = 6.6e-177
Identity = 312/359 (86.91%), Postives = 338/359 (94.15%), Query Frame = 1 

Query: 1    MVDQDVGH-VENHNLSADELQQTYSVEEFEIRILEPEKSGGPWQTRATIAMHSSENALTI 60
            +VDQ+VGH ++NHNLS+DELQ+TY+V+EFE+RILEPEKSGGPW+T+ATI M SSENALT+
Sbjct: 861  LVDQEVGHQMDNHNLSSDELQRTYTVDEFEVRILEPEKSGGPWETKATIPMQSSENALTV 920

Query: 61   RVVTLLNATTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDADNSQTLVSEVYSKELK 120
            RVVTL N TTKENE+LLA+GTAY+QGEDVAARGRV+L S+G++ DN Q LVSEVYSKELK
Sbjct: 921  RVVTLFNTTTKENESLLAIGTAYIQGEDVAARGRVILCSIGRNTDNLQNLVSEVYSKELK 980

Query: 121  GAISALASLQGHLLIASGPKIILHKWTGAELNGIAFYDVPPLYVVSLNIVKNFILLGDIH 180
            GAISALASLQGHLLIASGPKIILH WTG+ELNGIAFYD PPLYVVSLNIVKNFILLGD+H
Sbjct: 981  GAISALASLQGHLLIASGPKIILHNWTGSELNGIAFYDAPPLYVVSLNIVKNFILLGDVH 1040

Query: 181  KSIYFLSWKEQGAQLSLLAKDFGSLDCYATEFLIDGSTLSLTVSDDQKNIQIFYYAPKST 240
            KSIYFLSWKEQGAQLSLLAKDFGSLDC+ATEFLIDGSTLSL VSD+QKNIQIFYYAPK +
Sbjct: 1041 KSIYFLSWKEQGAQLSLLAKDFGSLDCFATEFLIDGSTLSLMVSDEQKNIQIFYYAPKMS 1100

Query: 241  ESWKGQKLLSRAEFHVGAHVTKFLRLQMLSTSSDKACSTV-SDKTNRFALLFGTLDGSIG 300
            ESWKGQKLLSRAEFHVGAHVTKFLRLQMLSTSSD+  +T  SDKTNRFALLFGTLDGSIG
Sbjct: 1101 ESWKGQKLLSRAEFHVGAHVTKFLRLQMLSTSSDRTSATAGSDKTNRFALLFGTLDGSIG 1160

Query: 301  CIAPLDELTFRRLQSLQKKLGDAVPHVGGLNPRSFRQFHSNGKVHRRGPDSIVDCELLC 358
            CIAPLDELTFRRLQSLQKKL DAVPHV GLNPRSFRQFHSNGK HR GPDSIVDCELLC
Sbjct: 1161 CIAPLDELTFRRLQSLQKKLVDAVPHVAGLNPRSFRQFHSNGKAHRPGPDSIVDCELLC 1219

The following BLAST results are available for this feature:
BLAST of MELO3C008722 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CPSF1_ARATH1.7e-16178.49Cleavage and polyadenylation specificity factor subunit 1 OS=Arabidopsis thalian... [more]
CPSF1_ORYSJ8.1e-15176.54Probable cleavage and polyadenylation specificity factor subunit 1 OS=Oryza sati... [more]
CPSF1_MOUSE8.6e-5236.28Cleavage and polyadenylation specificity factor subunit 1 OS=Mus musculus GN=Cps... [more]
CPSF1_BOVIN1.1e-5135.77Cleavage and polyadenylation specificity factor subunit 1 OS=Bos taurus GN=CPSF1... [more]
CPSF1_HUMAN1.9e-5135.93Cleavage and polyadenylation specificity factor subunit 1 OS=Homo sapiens GN=CPS... [more]
BLAST of MELO3C008722 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LKI9_CUCSA2.2e-20099.72Uncharacterized protein OS=Cucumis sativus GN=Csa_2G074280 PE=4 SV=1[more]
A0A061FZK0_THECC4.6e-17786.91Cleavage and polyadenylation specificity factor 160 isoform 2 OS=Theobroma cacao... [more]
A0A061G7F2_THECC4.6e-17786.91Cleavage and polyadenylation specificity factor 160 isoform 1 OS=Theobroma cacao... [more]
F6HAK2_VITVI3.3e-17586.39Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0022g01860 PE=4 SV=... [more]
A0A067FDF3_CITSI3.6e-17486.03Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0005452mg PE=4 ... [more]
BLAST of MELO3C008722 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G51660.19.8e-16378.49 cleavage and polyadenylation specificity factor 160[more]
AT4G05420.13.0e-1828.78 damaged DNA binding protein 1A[more]
AT4G21100.11.2e-1628.78 damaged DNA binding protein 1B[more]
BLAST of MELO3C008722 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659082456|ref|XP_008441850.1|1.1e-200100.00PREDICTED: cleavage and polyadenylation specificity factor subunit 1 isoform X1 ... [more]
gi|659082458|ref|XP_008441851.1|1.1e-200100.00PREDICTED: cleavage and polyadenylation specificity factor subunit 1 isoform X2 ... [more]
gi|778667872|ref|XP_011648998.1|3.2e-20099.72PREDICTED: cleavage and polyadenylation specificity factor subunit 1 [Cucumis sa... [more]
gi|590671948|ref|XP_007038473.1|6.6e-17786.91Cleavage and polyadenylation specificity factor 160 isoform 1 [Theobroma cacao][more]
gi|590671952|ref|XP_007038474.1|6.6e-17786.91Cleavage and polyadenylation specificity factor 160 isoform 2 [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004871Cleavage/polyA-sp_fac_asu_C
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0048449 floral organ formation
biological_process GO:0016570 histone modification
biological_process GO:0009909 regulation of flower development
cellular_component GO:0005829 cytosol
cellular_component GO:0005634 nucleus
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C008722T1MELO3C008722T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004871Cleavage/polyadenylation specificity factor, A subunit, C-terminalPFAMPF03178CPSF_Acoord: 28..358
score: 1.0
NoneNo IPR availablePANTHERPTHR10644DNA REPAIR/RNA PROCESSING CPSF FAMILYcoord: 9..358
score: 8.3E
NoneNo IPR availablePANTHERPTHR10644:SF2CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 1coord: 9..358
score: 8.3E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C008722Cucsa.178510Cucumber (Gy14) v1cgymeB320
MELO3C008722CsGy2G007480Cucumber (Gy14) v2cgybmeB120
MELO3C008722CsaV3_2G009710Cucumber (Chinese Long) v3cucmeB141
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C008722Cucurbita pepo (Zucchini)cpemeB102
MELO3C008722Cucurbita pepo (Zucchini)cpemeB777
MELO3C008722Bottle gourd (USVL1VR-Ls)lsimeB115
MELO3C008722Silver-seed gourdcarmeB0170
MELO3C008722Silver-seed gourdcarmeB0712
MELO3C008722Watermelon (97103) v2mewmbB369
MELO3C008722Wax gourdmewgoB456
MELO3C008722Wax gourdmewgoB468
MELO3C008722Cucurbita maxima (Rimu)cmameB175
MELO3C008722Cucurbita maxima (Rimu)cmameB737
MELO3C008722Cucurbita moschata (Rifu)cmomeB164
MELO3C008722Cucurbita moschata (Rifu)cmomeB725
MELO3C008722Wild cucumber (PI 183967)cpimeB139
MELO3C008722Cucumber (Chinese Long) v2cumeB133
MELO3C008722Watermelon (Charleston Gray)mewcgB367
MELO3C008722Watermelon (97103) v1mewmB426