MELO3C008570.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C008570.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	DUF679 domain membrane protein 2
Location	chr05 : 13346083 .. 13346292 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCCTCCGCCGTTGAAAAAACCCTTACCGGCATCAGAAACCTAATTCGTCTCCTCCCCACCGGCACCGTCTTTCTTTTCCAATTCCTCAGTCCAATCCTCACCAACAGCGGCTACCGCGAACCAATCAACAAAAAAGGCAGAGAGATAAAGAAGAAGAACAAAACGTTGTACTCGTTCTTCCTTGGGCGAAAGAAAATAGTGTAG

mRNA sequence

ATGGCTGCCTCCGCCGTTGAAAAAACCCTTACCGGCATCAGAAACCTAATTCGTCTCCTCCCCACCGGCACCGTCTTTCTTTTCCAATTCCTCAGTCCAATCCTCACCAACAGCGGCTACCGCGAACCAATCAACAAAAAAGGCAGAGAGATAAAGAAGAAGAACAAAACGTTGTACTCGTTCTTCCTTGGGCGAAAGAAAATAGTGTAG

Coding sequence (CDS)

ATGGCTGCCTCCGCCGTTGAAAAAACCCTTACCGGCATCAGAAACCTAATTCGTCTCCTCCCCACCGGCACCGTCTTTCTTTTCCAATTCCTCAGTCCAATCCTCACCAACAGCGGCTACCGCGAACCAATCAACAAAAAAGGCAGAGAGATAAAGAAGAAGAACAAAACGTTGTACTCGTTCTTCCTTGGGCGAAAGAAAATAGTGTAG

Protein sequence

MAASAVEKTLTGIRNLIRLLPTGTVFLFQFLSPILTNSGYREPINKKGREIKKKNKTLYSFFLGRKKIV

Homology

[Close]

BLAST of MELO3C008570.2 vs. NCBI nr
Match: XP_022954144.1 (protein DMP2-like [Cucurbita moschata])

HSP 1 Score: 81.6 bits (200), Expect = 1.1e-12
Identity = 41/46 (89.13%), Postives = 42/46 (91.30%), Query Frame = 0


Query: 1  MAASAVEKTLTGIRNLIRLLPTGTVFLFQFLSPILTNSGYREPINK 47
          MAASA EKTLTG+ NLIRLLPTGTVFLFQFLSPILTNSG  EPINK
Sbjct: 23 MAASATEKTLTGVGNLIRLLPTGTVFLFQFLSPILTNSGQCEPINK 68

[Close]

BLAST of MELO3C008570.2 vs. NCBI nr
Match: XP_022973688.1 (protein DMP2-like [Cucurbita maxima])

HSP 1 Score: 81.6 bits (200), Expect = 1.1e-12
Identity = 41/46 (89.13%), Postives = 42/46 (91.30%), Query Frame = 0


Query: 1  MAASAVEKTLTGIRNLIRLLPTGTVFLFQFLSPILTNSGYREPINK 47
          MAASA EKTLTG+ NLIRLLPTGTVFLFQFLSPILTNSG  EPINK
Sbjct: 1  MAASATEKTLTGVGNLIRLLPTGTVFLFQFLSPILTNSGQCEPINK 46

[Close]

BLAST of MELO3C008570.2 vs. NCBI nr
Match: XP_022975703.1 (protein DMP2-like [Cucurbita maxima])

HSP 1 Score: 81.6 bits (200), Expect = 1.1e-12
Identity = 41/46 (89.13%), Postives = 42/46 (91.30%), Query Frame = 0


Query: 1  MAASAVEKTLTGIRNLIRLLPTGTVFLFQFLSPILTNSGYREPINK 47
          MAASA EKTLTG+ NLIRLLPTGTVFLFQFLSPILTNSG  EPINK
Sbjct: 23 MAASATEKTLTGVGNLIRLLPTGTVFLFQFLSPILTNSGQCEPINK 68

[Close]

BLAST of MELO3C008570.2 vs. NCBI nr
Match: XP_023539190.1 (protein DMP2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 81.6 bits (200), Expect = 1.1e-12
Identity = 41/46 (89.13%), Postives = 42/46 (91.30%), Query Frame = 0


Query: 1  MAASAVEKTLTGIRNLIRLLPTGTVFLFQFLSPILTNSGYREPINK 47
          MAASA EKTLTG+ NLIRLLPTGTVFLFQFLSPILTNSG  EPINK
Sbjct: 23 MAASATEKTLTGVGNLIRLLPTGTVFLFQFLSPILTNSGQCEPINK 68

[Close]

BLAST of MELO3C008570.2 vs. NCBI nr
Match: XP_008438763.1 (PREDICTED: uncharacterized protein LOC103483776 [Cucumis melo])

HSP 1 Score: 81.3 bits (199), Expect = 1.5e-12
Identity = 40/46 (86.96%), Postives = 42/46 (91.30%), Query Frame = 0


Query: 1  MAASAVEKTLTGIRNLIRLLPTGTVFLFQFLSPILTNSGYREPINK 47
          MA SA EKTLTG+ NLIRLLPTGTVFLFQFLSPILTNSG+ EPINK
Sbjct: 24 MATSATEKTLTGVGNLIRLLPTGTVFLFQFLSPILTNSGHCEPINK 69

[Close]

BLAST of MELO3C008570.2 vs. TAIR10
Match: AT3G21550.1 (DUF679 domain membrane protein 2)

HSP 1 Score: 56.2 bits (134), Expect = 9.1e-09
Identity = 25/40 (62.50%), Postives = 35/40 (87.50%), Query Frame = 0


Query: 7  EKTLTGIRNLIRLLPTGTVFLFQFLSPILTNSGYREPINK 47
          ++T +G+ +LI+LLPTGTVFLFQFL+P+LTN+G+   INK
Sbjct: 10 DRTYSGVGDLIKLLPTGTVFLFQFLNPVLTNNGHCLLINK 49

[Close]

BLAST of MELO3C008570.2 vs. TAIR10
Match: AT3G21520.1 (DUF679 domain membrane protein 1)

HSP 1 Score: 47.8 bits (112), Expect = 3.2e-06
Identity = 21/39 (53.85%), Postives = 30/39 (76.92%), Query Frame = 0


Query: 8  KTLTGIRNLIRLLPTGTVFLFQFLSPILTNSGYREPINK 47
          K+LTG+ +LI+LLPTGT+F++  L+P+LTN G     NK
Sbjct: 25 KSLTGLESLIKLLPTGTLFIYLLLNPVLTNDGECSTGNK 63

[Close]

BLAST of MELO3C008570.2 vs. TAIR10
Match: AT5G46090.1 (Protein of unknown function (DUF679))

HSP 1 Score: 42.7 bits (99), Expect = 1.0e-04
Identity = 22/39 (56.41%), Postives = 23/39 (58.97%), Query Frame = 0


Query: 1  MAASAVEKTLTGIRNLIRLLPTGTVFLFQFLSPILTNSG 40
          M   A+ KT     NL  LLPTGTV  FQ LSPI TN G
Sbjct: 37 MMQKAIGKTFQTTANLANLLPTGTVLAFQILSPICTNVG 75

[Close]

BLAST of MELO3C008570.2 vs. TAIR10
Match: AT3G02430.1 (Protein of unknown function (DUF679))

HSP 1 Score: 42.4 bits (98), Expect = 1.4e-04
Identity = 19/39 (48.72%), Postives = 26/39 (66.67%), Query Frame = 0


Query: 1  MAASAVEKTLTGIRNLIRLLPTGTVFLFQFLSPILTNSG 40
          M+  A+  TLT   NL  LLPTGT+  FQ L+P+ T++G
Sbjct: 36 MSQRAMSNTLTSAANLSNLLPTGTLLAFQLLTPVFTSNG 74

[Close]

BLAST of MELO3C008570.2 vs. TAIR10
Match: AT4G18425.1 (Protein of unknown function (DUF679))

HSP 1 Score: 39.7 bits (91), Expect = 8.8e-04
Identity = 19/42 (45.24%), Postives = 26/42 (61.90%), Query Frame = 0


Query: 5  AVEKTLTGIRNLIRLLPTGTVFLFQFLSPILTNSGYREPINK 47
          A+ +T     +L  LLPTGTV  FQ LSPI +N G  + ++K
Sbjct: 40 AIGQTFQTTAHLANLLPTGTVLAFQLLSPIFSNGGQCDLVSK 81

[Close]

BLAST of MELO3C008570.2 vs. Swiss-Prot
Match: sp|Q9LVF1|DMP2_ARATH (Protein DMP2 OS=Arabidopsis thaliana OX=3702 GN=DMP2 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.6e-07
Identity = 25/40 (62.50%), Postives = 35/40 (87.50%), Query Frame = 0


Query: 7  EKTLTGIRNLIRLLPTGTVFLFQFLSPILTNSGYREPINK 47
          ++T +G+ +LI+LLPTGTVFLFQFL+P+LTN+G+   INK
Sbjct: 10 DRTYSGVGDLIKLLPTGTVFLFQFLNPVLTNNGHCLLINK 49

[Close]

BLAST of MELO3C008570.2 vs. Swiss-Prot
Match: sp|Q9LVF4|DMP1_ARATH (Protein DMP1 OS=Arabidopsis thaliana OX=3702 GN=DMP1 PE=2 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 5.8e-05
Identity = 21/39 (53.85%), Postives = 30/39 (76.92%), Query Frame = 0


Query: 8  KTLTGIRNLIRLLPTGTVFLFQFLSPILTNSGYREPINK 47
          K+LTG+ +LI+LLPTGT+F++  L+P+LTN G     NK
Sbjct: 25 KSLTGLESLIKLLPTGTLFIYLLLNPVLTNDGECSTGNK 63

[Close]

BLAST of MELO3C008570.2 vs. TrEMBL
Match: tr|A0A1S3AXU6|A0A1S3AXU6_CUCME (uncharacterized protein LOC103483776 OS=Cucumis melo OX=3656 GN=LOC103483776 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 9.6e-13
Identity = 40/46 (86.96%), Postives = 42/46 (91.30%), Query Frame = 0


Query: 1  MAASAVEKTLTGIRNLIRLLPTGTVFLFQFLSPILTNSGYREPINK 47
          MA SA EKTLTG+ NLIRLLPTGTVFLFQFLSPILTNSG+ EPINK
Sbjct: 24 MATSATEKTLTGVGNLIRLLPTGTVFLFQFLSPILTNSGHCEPINK 69

[Close]

BLAST of MELO3C008570.2 vs. TrEMBL
Match: tr|A0A0A0LAH2|A0A0A0LAH2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G150800 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.8e-11
Identity = 38/46 (82.61%), Postives = 41/46 (89.13%), Query Frame = 0


Query: 1  MAASAVEKTLTGIRNLIRLLPTGTVFLFQFLSPILTNSGYREPINK 47
          MA+S  EKTLTG+ NLIRLLPTGTVFLFQFLSPI TNSG+ EPINK
Sbjct: 20 MASSPTEKTLTGVGNLIRLLPTGTVFLFQFLSPIPTNSGHCEPINK 65

[Close]

BLAST of MELO3C008570.2 vs. TrEMBL
Match: tr|A0A0A0L536|A0A0A0L536_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G150790 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.5e-08
Identity = 33/47 (70.21%), Postives = 40/47 (85.11%), Query Frame = 0


Query: 1  MAASAV-EKTLTGIRNLIRLLPTGTVFLFQFLSPILTNSGYREPINK 47
          MA S + +KT TG  +LI++LPTGTVFLFQFLSP+LTNSG+ EPINK
Sbjct: 1  MATSQLNQKTFTGAGDLIKILPTGTVFLFQFLSPVLTNSGHCEPINK 47

[Close]

BLAST of MELO3C008570.2 vs. TrEMBL
Match: tr|A0A1S3AZA4|A0A1S3AZA4_CUCME (uncharacterized protein LOC103484187 OS=Cucumis melo OX=3656 GN=LOC103484187 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.2e-08
Identity = 32/47 (68.09%), Postives = 40/47 (85.11%), Query Frame = 0


Query: 1  MAASAV-EKTLTGIRNLIRLLPTGTVFLFQFLSPILTNSGYREPINK 47
          MA S + +KT TG  +LI++LPTGTVFLFQFLSP+LTNSG+ EP+NK
Sbjct: 13 MATSQLNQKTFTGAGDLIKILPTGTVFLFQFLSPVLTNSGHCEPVNK 59

[Close]

BLAST of MELO3C008570.2 vs. TrEMBL
Match: tr|A0A0A0L7S6|A0A0A0L7S6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G150780 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.1e-08
Identity = 32/46 (69.57%), Postives = 37/46 (80.43%), Query Frame = 0


Query: 1  MAASAVEKTLTGIRNLIRLLPTGTVFLFQFLSPILTNSGYREPINK 47
          MA S+ +KTLTG  +LIR+LPTGTVFLFQFLSP LTNSG+    NK
Sbjct: 1  MATSSKQKTLTGAGDLIRILPTGTVFLFQFLSPSLTNSGHCNSFNK 46

The following BLAST results are available for this feature:

BLAST of MELO3C008570.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022954144.1	1.1e-12	89.13	protein DMP2-like [Cucurbita moschata]	[more]
XP_022973688.1	1.1e-12	89.13	protein DMP2-like [Cucurbita maxima]	[more]
XP_022975703.1	1.1e-12	89.13	protein DMP2-like [Cucurbita maxima]	[more]
XP_023539190.1	1.1e-12	89.13	protein DMP2-like [Cucurbita pepo subsp. pepo]	[more]
XP_008438763.1	1.5e-12	86.96	PREDICTED: uncharacterized protein LOC103483776 [Cucumis melo]	[more]

BLAST of MELO3C008570.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G21550.1	9.1e-09	62.50	DUF679 domain membrane protein 2	[more]
AT3G21520.1	3.2e-06	53.85	DUF679 domain membrane protein 1	[more]
AT5G46090.1	1.0e-04	56.41	Protein of unknown function (DUF679)	[more]
AT3G02430.1	1.4e-04	48.72	Protein of unknown function (DUF679)	[more]
AT4G18425.1	8.8e-04	45.24	Protein of unknown function (DUF679)	[more]

BLAST of MELO3C008570.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LVF1\|DMP2_ARATH	1.6e-07	62.50	Protein DMP2 OS=Arabidopsis thaliana OX=3702 GN=DMP2 PE=2 SV=1	[more]
sp\|Q9LVF4\|DMP1_ARATH	5.8e-05	53.85	Protein DMP1 OS=Arabidopsis thaliana OX=3702 GN=DMP1 PE=2 SV=1	[more]

BLAST of MELO3C008570.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AXU6\|A0A1S3AXU6_CUCME	9.6e-13	86.96	uncharacterized protein LOC103483776 OS=Cucumis melo OX=3656 GN=LOC103483776 PE=...	[more]
tr\|A0A0A0LAH2\|A0A0A0LAH2_CUCSA	1.8e-11	82.61	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G150800 PE=4 SV=1	[more]
tr\|A0A0A0L536\|A0A0A0L536_CUCSA	2.5e-08	70.21	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G150790 PE=4 SV=1	[more]
tr\|A0A1S3AZA4\|A0A1S3AZA4_CUCME	3.2e-08	68.09	uncharacterized protein LOC103484187 OS=Cucumis melo OX=3656 GN=LOC103484187 PE=...	[more]
tr\|A0A0A0L7S6\|A0A0A0L7S6_CUCSA	7.1e-08	69.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G150780 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007770	DMP

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0009705	plant-type vacuole membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C008570.2.1	MELO3C008570.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007770	Protein DMP	PFAM	PF05078	DUF679	coord: 13..46 e-value: 7.0E-8 score: 32.5
IPR007770	Protein DMP	PANTHER	PTHR31621	FAMILY NOT NAMED	coord: 3..40

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C008570.2	Cucumber (Gy14) v2	cgybmedB122
MELO3C008570.2	Cucumber (Gy14) v1	cgymedB340
MELO3C008570.2	Cucurbita maxima (Rimu)	cmamedB494
MELO3C008570.2	Cucurbita maxima (Rimu)	cmamedB830
MELO3C008570.2	Cucurbita moschata (Rifu)	cmomedB481
MELO3C008570.2	Cucurbita moschata (Rifu)	cmomedB823
MELO3C008570.2	Cucurbita pepo (Zucchini)	cpemedB125
MELO3C008570.2	Cucurbita pepo (Zucchini)	cpemedB627
MELO3C008570.2	Wild cucumber (PI 183967)	cpimedB135
MELO3C008570.2	Cucumber (Chinese Long) v2	cumedB135
MELO3C008570.2	Bottle gourd (USVL1VR-Ls)	lsimedB125
MELO3C008570.2	Watermelon (Charleston Gray)	medwcgB365
MELO3C008570.2	Watermelon (97103) v1	medwmB412
MELO3C008570.2	Silver-seed gourd	carmedB0711
MELO3C008570.2	Cucumber (Chinese Long) v3	cucmedB137
MELO3C008570.2	Watermelon (97103) v2	medwmbB362
MELO3C008570.2	Watermelon (97103) v2	medwmbB366
MELO3C008570.2	Wax gourd	medwgoB458