MELO3C007952 (gene) Melon (DHL92) v3.5.1

NameMELO3C007952
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionF-box protein
Locationchr8 : 6449956 .. 6450438 (-)
   



The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTGTAAATACGGAAGGTGTTTGTGTTTCTGAAATTAGTAAGGTCGTAACGTTCCCTGATTCTTCTTGGATCGATACGAAGAATTGCATCGCTTTTGCGATTTTTGTAGATGGAAAATTAAGATTCACGAAACTTACGGATGAGAAATGGACGATGATTGAGAAACATAATTTTGCCTGCGGTGATGTGATTGCATACGGGGGAAAGTTCTATGCAGTTGATAGAAGAGGAAAAGTTTTCTCGGTCGATTCATCGTCGATGGAATTGTCACAAATTTCTCTTCCGATGAGTGGCTTTGGTAAACAGAAACATCTGGTGGAGTGCGGCGGCGAGGTTTATATGGTAGATCGATTATATGATTTCAGTGACAGTGATGATGATGGTGGTGGTGGTGGTGGTGGTGGTGAGAGTGAGAGTGAGGAAGAGGAAGATGAAGAAGAAGAAGAAGAAGAAGAAGAGGCTGATTTCAAAGTGTATTGA

mRNA sequence

ATGCTTGTAAATACGGAAGGTGTTTGTGTTTCTGAAATTAGTAAGGTCGTAACGTTCCCTGATTCTTCTTGGATCGATACGAAGAATTGCATCGCTTTTGCGATTTTTGTAGATGGAAAATTAAGATTCACGAAACTTACGGATGAGAAATGGACGATGATTGAGAAACATAATTTTGCCTGCGGTGATGTGATTGCATACGGGGGAAAGTTCTATGCAGTTGATAGAAGAGGAAAAGTTTTCTCGGTCGATTCATCGTCGATGGAATTGTCACAAATTTCTCTTCCGATGAGTGGCTTTGGTAAACAGAAACATCTGGTGGAGTGCGGCGGCGAGGTTTATATGGTAGATCGATTATATGATTTCAGTGACAGTGATGATGATGGTGGTGGTGGTGGTGGTGGTGGTGAGAGTGAGAGTGAGGAAGAGGAAGATGAAGAAGAAGAAGAAGAAGAAGAAGAGGCTGATTTCAAAGTGTATTGA

Coding sequence (CDS)

ATGCTTGTAAATACGGAAGGTGTTTGTGTTTCTGAAATTAGTAAGGTCGTAACGTTCCCTGATTCTTCTTGGATCGATACGAAGAATTGCATCGCTTTTGCGATTTTTGTAGATGGAAAATTAAGATTCACGAAACTTACGGATGAGAAATGGACGATGATTGAGAAACATAATTTTGCCTGCGGTGATGTGATTGCATACGGGGGAAAGTTCTATGCAGTTGATAGAAGAGGAAAAGTTTTCTCGGTCGATTCATCGTCGATGGAATTGTCACAAATTTCTCTTCCGATGAGTGGCTTTGGTAAACAGAAACATCTGGTGGAGTGCGGCGGCGAGGTTTATATGGTAGATCGATTATATGATTTCAGTGACAGTGATGATGATGGTGGTGGTGGTGGTGGTGGTGGTGAGAGTGAGAGTGAGGAAGAGGAAGATGAAGAAGAAGAAGAAGAAGAAGAAGAGGCTGATTTCAAAGTGTATTGA

Protein sequence

MLVNTEGVCVSEISKVVTFPDSSWIDTKNCIAFAIFVDGKLRFTKLTDEKWTMIEKHNFACGDVIAYGGKFYAVDRRGKVFSVDSSSMELSQISLPMSGFGKQKHLVECGGEVYMVDRLYDFSDSDDDGGGGGGGGESESEEEEDEEEEEEEEEADFKVY*
BLAST of MELO3C007952 vs. Swiss-Prot
Match: SKI23_ARATH (F-box protein SKIP23 OS=Arabidopsis thaliana GN=SKIP23 PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 5.3e-09
Identity = 34/100 (34.00%), Postives = 52/100 (52.00%), Query Frame = 1

Query: 31  IAFAIFVDGKLRFTKLTDEKWTMIEKHNFACGDVIAYGGKFYAVDRRGKVFSVDSSSMEL 90
           +   I V GKL   +  D  WT+I        DV+ + G+F+AVD  G+   VD SS++L
Sbjct: 175 VLLTIHVSGKLAVFRSWDRAWTVINDMPSPYDDVMLFDGRFFAVDNNGRTVVVDYSSLKL 234

Query: 91  SQISLPMSGFGKQKHLVECGGEVYMVDRLYDFSDSDDDGG 131
           + ++ P+ G G +K L+E  GE+ +VD        + D G
Sbjct: 235 TLVASPVFG-GDKKFLIESCGEMLLVDMYLSLEAVEGDPG 273

BLAST of MELO3C007952 vs. TrEMBL
Match: A0A0A0KHE7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G507410 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 1.3e-51
Identity = 103/112 (91.96%), Postives = 104/112 (92.86%), Query Frame = 1

Query: 1   MLVNTEGVCVSEISKVVTFPDSSWIDTKNCIAFAIFVDGKLRFTKLTDEKWTMIEKHNFA 60
           MLVNTEGVCVSEI KVV FPDS WIDTKNCI FAIFVDGKL FTKLTDEKWTMIEKHNFA
Sbjct: 73  MLVNTEGVCVSEIRKVVMFPDSPWIDTKNCIVFAIFVDGKLGFTKLTDEKWTMIEKHNFA 132

Query: 61  CGDVIAYGGKFYAVDRRGKVFSVDSSSMELSQISLPMSGFGKQKHLVECGGE 113
            GDVI Y GKFYAVDRRG+VFSVDSSSMELSQISLPMSGFGKQKHLVECGGE
Sbjct: 133 RGDVIVYRGKFYAVDRRGEVFSVDSSSMELSQISLPMSGFGKQKHLVECGGE 184

BLAST of MELO3C007952 vs. TrEMBL
Match: A0A0A0KJJ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G507420 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 4.2e-29
Identity = 68/117 (58.12%), Postives = 79/117 (67.52%), Query Frame = 1

Query: 5   TEGVCVSEISKVVTFPDSSWIDTKNCIAFAIFVDGKLRFTKLTDEKWTMIEKHNFACGDV 64
           T G  V  I+KVV FPDS WID K C   AI+  GKL F K  D KWT+I+  NF   DV
Sbjct: 166 TNGSLVPRITKVVMFPDSPWIDVKKCTILAIYAGGKLGFAKHGDNKWTLIDHCNFHYDDV 225

Query: 65  IAYGGKFYAVDRRGKVFSVDSSSMELSQISLPMSGFGKQKHLVECGGEVYMVDRLYD 122
           I Y G+FYAVDR G +F +D SSM+L Q S P+ GFG QKHLVEC GE+Y+VDR  D
Sbjct: 226 IVYKGQFYAVDRWGTIFWID-SSMKLVQFSPPLCGFGNQKHLVECNGELYVVDRFLD 281

BLAST of MELO3C007952 vs. TrEMBL
Match: I1JCC6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_02G043500 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.0e-23
Identity = 55/121 (45.45%), Postives = 79/121 (65.29%), Query Frame = 1

Query: 5   TEGVCVSEISKVVTFPDSSWIDTKNCIAFAIFVDGKLRFTKLTDEKWTMIEKHNFACGDV 64
           T  +  + +SKVV FP+S WI  ++ +A  IF++GKL F K  DEKWT+++  NF   DV
Sbjct: 151 TTNISSAAVSKVVFFPNSPWIGAQDSVACCIFLEGKLGFMKHGDEKWTLVDNKNFFYDDV 210

Query: 65  IAYGGKFYAVDRRGKVFSVDSSSMELSQISLPMSGFGKQKHLVECGGEVYMVDRLYDFSD 124
           I + G+FY  D RG +  +D+SS++L Q S P+ G G +KHLVE  G +Y+VDR Y+   
Sbjct: 211 IVFKGQFYVTDDRGTISWIDTSSLKLVQFSPPLCGLGDKKHLVESCGSLYVVDRYYESET 270

Query: 125 S 126
           S
Sbjct: 271 S 271

BLAST of MELO3C007952 vs. TrEMBL
Match: A0A0B2NTG8_GLYSO (F-box protein SKIP23 OS=Glycine soja GN=glysoja_000104 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.0e-23
Identity = 55/121 (45.45%), Postives = 79/121 (65.29%), Query Frame = 1

Query: 5   TEGVCVSEISKVVTFPDSSWIDTKNCIAFAIFVDGKLRFTKLTDEKWTMIEKHNFACGDV 64
           T  +  + +SKVV FP+S WI  ++ +A  IF++GKL F K  DEKWT+++  NF   DV
Sbjct: 151 TTNISSAAVSKVVFFPNSPWIGAQDSVACCIFLEGKLGFMKHGDEKWTLVDNKNFFYDDV 210

Query: 65  IAYGGKFYAVDRRGKVFSVDSSSMELSQISLPMSGFGKQKHLVECGGEVYMVDRLYDFSD 124
           I + G+FY  D RG +  +D+SS++L Q S P+ G G +KHLVE  G +Y+VDR Y+   
Sbjct: 211 IVFKGQFYVTDDRGTISWIDTSSLKLVQFSPPLCGLGDKKHLVESCGSLYVVDRYYESET 270

Query: 125 S 126
           S
Sbjct: 271 S 271

BLAST of MELO3C007952 vs. TrEMBL
Match: A0A151QQP9_CAJCA (F-box protein SKIP23 OS=Cajanus cajan GN=KK1_046635 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.2e-22
Identity = 52/119 (43.70%), Postives = 78/119 (65.55%), Query Frame = 1

Query: 3   VNTEGVCVSEISKVVTFPDSSWIDTKNCIAFAIFVDGKLRFTKLTDEKWTMIEKHNFACG 62
           ++  G   S +SKVV FP+S W   +  +A  IF++GKL F K  D+KWT+++  NF   
Sbjct: 146 IHCRGRFSSAVSKVVFFPNSPWFGAEESVACCIFLEGKLGFMKYGDDKWTLVDDKNFFYD 205

Query: 63  DVIAYGGKFYAVDRRGKVFSVDSSSMELSQISLPMSGFGKQKHLVECGGEVYMVDRLYD 122
           DVI + G+FY  D+ G +  VD+SS++L Q S P+ GFG +KHL+E  G +Y+VDR ++
Sbjct: 206 DVIVFKGQFYVTDKWGTISWVDTSSLKLVQFSPPLCGFGNKKHLLESCGSLYVVDRFFE 264

BLAST of MELO3C007952 vs. TAIR10
Match: AT2G17030.1 (AT2G17030.1 F-box family protein with a domain of unknown function (DUF295))

HSP 1 Score: 62.4 bits (150), Expect = 3.0e-10
Identity = 34/100 (34.00%), Postives = 52/100 (52.00%), Query Frame = 1

Query: 31  IAFAIFVDGKLRFTKLTDEKWTMIEKHNFACGDVIAYGGKFYAVDRRGKVFSVDSSSMEL 90
           +   I V GKL   +  D  WT+I        DV+ + G+F+AVD  G+   VD SS++L
Sbjct: 175 VLLTIHVSGKLAVFRSWDRAWTVINDMPSPYDDVMLFDGRFFAVDNNGRTVVVDYSSLKL 234

Query: 91  SQISLPMSGFGKQKHLVECGGEVYMVDRLYDFSDSDDDGG 131
           + ++ P+ G G +K L+E  GE+ +VD        + D G
Sbjct: 235 TLVASPVFG-GDKKFLIESCGEMLLVDMYLSLEAVEGDPG 273

BLAST of MELO3C007952 vs. NCBI nr
Match: gi|659081066|ref|XP_008441132.1| (PREDICTED: F-box protein At2g17036 [Cucumis melo])

HSP 1 Score: 330.1 bits (845), Expect = 2.2e-87
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 1

Query: 1   MLVNTEGVCVSEISKVVTFPDSSWIDTKNCIAFAIFVDGKLRFTKLTDEKWTMIEKHNFA 60
           MLVNTEGVCVSEISKVVTFPDSSWIDTKNCIAFAIFVDGKLRFTKLTDEKWTMIEKHNFA
Sbjct: 469 MLVNTEGVCVSEISKVVTFPDSSWIDTKNCIAFAIFVDGKLRFTKLTDEKWTMIEKHNFA 528

Query: 61  CGDVIAYGGKFYAVDRRGKVFSVDSSSMELSQISLPMSGFGKQKHLVECGGEVYMVDRLY 120
           CGDVIAYGGKFYAVDRRGKVFSVDSSSMELSQISLPMSGFGKQKHLVECGGEVYMVDRLY
Sbjct: 529 CGDVIAYGGKFYAVDRRGKVFSVDSSSMELSQISLPMSGFGKQKHLVECGGEVYMVDRLY 588

Query: 121 DFSDSDDDGGGGGGGGESESEEEEDEEEEEEEEEADFKVY 161
           DFSDSDDDGGGGGGGGESESEEEEDEEEEEEEEEADFKVY
Sbjct: 589 DFSDSDDDGGGGGGGGESESEEEEDEEEEEEEEEADFKVY 628

BLAST of MELO3C007952 vs. NCBI nr
Match: gi|659081066|ref|XP_008441132.1| (PREDICTED: F-box protein At2g17036 [Cucumis melo])

HSP 1 Score: 136.7 bits (343), Expect = 3.5e-29
Identity = 68/117 (58.12%), Postives = 79/117 (67.52%), Query Frame = 1

Query: 5   TEGVCVSEISKVVTFPDSSWIDTKNCIAFAIFVDGKLRFTKLTDEKWTMIEKHNFACGDV 64
           T G  V  I+KVV FPDS WID K C   A++  GKL F K  D+KWT+I+  NF   DV
Sbjct: 163 TNGSPVPRITKVVMFPDSPWIDVKKCTILAVYAGGKLGFAKHGDDKWTLIDHRNFHYDDV 222

Query: 65  IAYGGKFYAVDRRGKVFSVDSSSMELSQISLPMSGFGKQKHLVECGGEVYMVDRLYD 122
           I Y G+FYAVDR G VF +D SSM L Q S P+ GFG QKHLVEC GE+Y+VDR  D
Sbjct: 223 IVYKGQFYAVDRWGTVFWID-SSMRLVQFSPPLCGFGNQKHLVECNGELYVVDRFLD 278


HSP 2 Score: 210.7 bits (535), Expect = 1.9e-51
Identity = 103/112 (91.96%), Postives = 104/112 (92.86%), Query Frame = 1

Query: 1   MLVNTEGVCVSEISKVVTFPDSSWIDTKNCIAFAIFVDGKLRFTKLTDEKWTMIEKHNFA 60
           MLVNTEGVCVSEI KVV FPDS WIDTKNCI FAIFVDGKL FTKLTDEKWTMIEKHNFA
Sbjct: 73  MLVNTEGVCVSEIRKVVMFPDSPWIDTKNCIVFAIFVDGKLGFTKLTDEKWTMIEKHNFA 132

Query: 61  CGDVIAYGGKFYAVDRRGKVFSVDSSSMELSQISLPMSGFGKQKHLVECGGE 113
            GDVI Y GKFYAVDRRG+VFSVDSSSMELSQISLPMSGFGKQKHLVECGGE
Sbjct: 133 RGDVIVYRGKFYAVDRRGEVFSVDSSSMELSQISLPMSGFGKQKHLVECGGE 184

BLAST of MELO3C007952 vs. NCBI nr
Match: gi|778719846|ref|XP_004134837.2| (PREDICTED: putative F-box protein At1g65770 [Cucumis sativus])

HSP 1 Score: 136.0 bits (341), Expect = 6.0e-29
Identity = 68/117 (58.12%), Postives = 79/117 (67.52%), Query Frame = 1

Query: 5   TEGVCVSEISKVVTFPDSSWIDTKNCIAFAIFVDGKLRFTKLTDEKWTMIEKHNFACGDV 64
           T G  V  I+KVV FPDS WID K C   AI+  GKL F K  D KWT+I+  NF   DV
Sbjct: 166 TNGSLVPRITKVVMFPDSPWIDVKKCTILAIYAGGKLGFAKHGDNKWTLIDHCNFHYDDV 225

Query: 65  IAYGGKFYAVDRRGKVFSVDSSSMELSQISLPMSGFGKQKHLVECGGEVYMVDRLYD 122
           I Y G+FYAVDR G +F +D SSM+L Q S P+ GFG QKHLVEC GE+Y+VDR  D
Sbjct: 226 IVYKGQFYAVDRWGTIFWID-SSMKLVQFSPPLCGFGNQKHLVECNGELYVVDRFLD 281

BLAST of MELO3C007952 vs. NCBI nr
Match: gi|659072629|ref|XP_008466513.1| (PREDICTED: putative F-box protein At1g65770 [Cucumis melo])

HSP 1 Score: 121.3 bits (303), Expect = 1.5e-24
Identity = 60/117 (51.28%), Postives = 77/117 (65.81%), Query Frame = 1

Query: 5   TEGVCVSEISKVVTFPDSSWIDTKNCIAFAIFVDGKLRFTKLTDEKWTMIEKHNFACGDV 64
           ++  CV  ISK+V FP+SS  D K+C   A+F  GKL F +  DEKWT+I++ NF   DV
Sbjct: 159 SDTTCVPGISKIVVFPNSSGSDVKDCTIIAVFECGKLGFARSGDEKWTLIDEQNFHYDDV 218

Query: 65  IAYGGKFYAVDRRGKVFSVDSSSMELSQISLPMSGFGKQKHLVECGGEVYMVDRLYD 122
           I Y  ++Y VDR G VF +D SSM L Q S P+ G G  KHLVECGGE+ ++DR  D
Sbjct: 219 IVYNQQYYTVDRWGTVFWID-SSMRLVQFSPPLIGLGHHKHLVECGGELLVIDRFLD 274

BLAST of MELO3C007952 vs. NCBI nr
Match: gi|778698509|ref|XP_004149495.2| (PREDICTED: F-box protein At2g26160-like [Cucumis sativus])

HSP 1 Score: 120.9 bits (302), Expect = 2.0e-24
Identity = 60/114 (52.63%), Postives = 76/114 (66.67%), Query Frame = 1

Query: 5   TEGVCVSEISKVVTFPDSSWIDTKNCIAFAIFVDGKLRFTKLTDEKWTMIEKHNFACGDV 64
           T+  CV  ISK+V FP+SS  D K+C   A+F  GKL F +  DEKWT+I++ NF   DV
Sbjct: 184 TDTTCVPGISKIVLFPNSSGSDVKDCTIIAVFEGGKLGFARSGDEKWTLIDEQNFHYDDV 243

Query: 65  IAYGGKFYAVDRRGKVFSVDSSSMELSQISLPMSGFGKQKHLVECGGEVYMVDR 119
           I Y  ++Y VDR G VF +D  SM L Q S P+ G G QKHLVECGGE+ ++DR
Sbjct: 244 IVYNQQYYTVDRWGTVFWID-LSMRLVQFSPPLIGLGHQKHLVECGGELLVIDR 296

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
SKI23_ARATH5.3e-0934.00F-box protein SKIP23 OS=Arabidopsis thaliana GN=SKIP23 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0KHE7_CUCSA1.3e-5191.96Uncharacterized protein OS=Cucumis sativus GN=Csa_6G507410 PE=4 SV=1[more]
A0A0A0KJJ1_CUCSA4.2e-2958.12Uncharacterized protein OS=Cucumis sativus GN=Csa_6G507420 PE=4 SV=1[more]
I1JCC6_SOYBN2.0e-2345.45Uncharacterized protein OS=Glycine max GN=GLYMA_02G043500 PE=4 SV=1[more]
A0A0B2NTG8_GLYSO2.0e-2345.45F-box protein SKIP23 OS=Glycine soja GN=glysoja_000104 PE=4 SV=1[more]
A0A151QQP9_CAJCA2.2e-2243.70F-box protein SKIP23 OS=Cajanus cajan GN=KK1_046635 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G17030.13.0e-1034.00 F-box family protein with a domain of unknown function (DUF295)[more]
Match NameE-valueIdentityDescription
gi|659081066|ref|XP_008441132.1|2.2e-87100.00PREDICTED: F-box protein At2g17036 [Cucumis melo][more]
gi|659081066|ref|XP_008441132.1|3.5e-2958.12PREDICTED: F-box protein At2g17036 [Cucumis melo][more]
gi|778719846|ref|XP_004134837.2|6.0e-2958.12PREDICTED: putative F-box protein At1g65770 [Cucumis sativus][more]
gi|659072629|ref|XP_008466513.1|1.5e-2451.28PREDICTED: putative F-box protein At1g65770 [Cucumis melo][more]
gi|778698509|ref|XP_004149495.2|2.0e-2452.63PREDICTED: F-box protein At2g26160-like [Cucumis sativus][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006259 DNA metabolic process
cellular_component GO:0005575 cellular_component
cellular_component GO:0044424 intracellular part
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C007952T1MELO3C007952T1mRNA


The following gene(s) are paralogous to this gene:

None