MELO3C007512 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C007512
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	P-loop containing nucleoside triphosphate hydrolases superfamily protein
Location	chr8 : 3286610 .. 3287584 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCAAATTGAAGTCTTCACTTTCTTTGATTCTATAAAAACCCCTCAAATTCTCTGCAACAAGCTGAATAGCTCTCTCTTCCACAAAACGAAAATGGCTTTCGTGATTTCCAAAGCTTCGTCATCTTTCTCAGAGACCGAGAATCCGGGAGATTCGGATCTCAGCCGCAACGACGCCGTTTCGAGCCATGTTCTCTTGAAATCTGCTGGCAAAATGGACAGAGATGTCGTTCTTCGCCGCATTCGTTTTTATAAGCGATTGAACAAAGTGAAGAGGACCTTGGAAAGTCTTGTCGGTAGCGGCGACGGTGGTTCGGAGGTTGCAAATGCGATGGCAGATGAGGCCGAGAAATGGTGGCTGCAGCAGCATGATGTTTTTTTTTGGGTAATTGAATCGTGGATGGTTTTGGTGATTCTCGATTATTCTCTTCCAATTTGGGTGTGATTTCTTTGATGTAAATGAAATGAAGTTGGATGCATTTGCTTGCGAGCGAATGGCGATAAATGGTTTTAAGGAAAAAAGGGTGTCGGTTAATATAGCCATTCACTCAAAGATTATTAGATATAACACACTTGAAAACTAAATTTAGATCCCTTCTCATAATATATTAGTAGTAGATCATATCATATCGTTGAGAGTAATCTGTTTATATATATATTGAATTGTTTTAAACCTATCGCTATACACATACTATGGTACGATATTTTAAATCTACGATCTTGACCAACTTATACATAAAAAGAAATACATCAATTTCAACTCAAAGAATTGAGCGAAAGACAACAAAATATGAATTGTTAAAGATATAAGAACATAATGTGGAATAATGTTAAAATAGAAAGCAACCATTAATCATCTAAAGTGCACTAGACTTTCTTTAGGTTCAAGGAATTCAAGAACTTCTTTAGATAAGGATTGATCTACAGAAATATCTCGAATGTTTGTAGAATTTAAGATGCTTAACCTTCAAGAATTTA

mRNA sequence

TCAAATTGAAGTCTTCACTTTCTTTGATTCTATAAAAACCCCTCAAATTCTCTGCAACAAGCTGAATAGCTCTCTCTTCCACAAAACGAAAATGGCTTTCGTGATTTCCAAAGCTTCGTCATCTTTCTCAGAGACCGAGAATCCGGGAGATTCGGATCTCAGCCGCAACGACGCCGTTTCGAGCCATGTTCTCTTGAAATCTGCTGGCAAAATGGACAGAGATGTCGTTCTTCGCCGCATTCGTTTTTATAAGCGATTGAACAAAGTGAAGAGGACCTTGGAAAGTCTTGTCGGTAGCGGCGACGGTGGTTCGGAGGTTGCAAATGCGATGGCAGATGAGGCCGAGAAATGGTGGCTGCAGCAGCATGATGTTTTTTTTTGGGTAATTGAATCGTGGATGGTTTTGGTGATTCTCGATTATTCTCTTCCAATTTGGGTGTGATTTCTTTGATGTAAATGAAATGAAGTTGGATGCATTTGCTTGCGAGCGAATGGCGATAAATGGTTTTAAGGAAAAAAGGGTGTCGGTTAATATAGCCATTCACTCAAAGATTATTAGATATAACACACTTGAAAACTAAATTTAGATCCCTTCTCATAATATATTAGTAGTAGATCATATCATATCGTTGAGAGTAATCTGTTTATATATATATTGAATTGTTTTAAACCTATCGCTATACACATACTATGGTACGATATTTTAAATCTACGATCTTGACCAACTTATACATAAAAAGAAATACATCAATTTCAACTCAAAGAATTGAGCGAAAGACAACAAAATATGAATTGTTAAAGATATAAGAACATAATGTGGAATAATGTTAAAATAGAAAGCAACCATTAATCATCTAAAGTGCACTAGACTTTCTTTAGGTTCAAGGAATTCAAGAACTTCTTTAGATAAGGATTGATCTACAGAAATATCTCGAATGTTTGTAGAATTTAAGATGCTTAACCTTCAAGAATTTA

Coding sequence (CDS)

ATGGCTTTCGTGATTTCCAAAGCTTCGTCATCTTTCTCAGAGACCGAGAATCCGGGAGATTCGGATCTCAGCCGCAACGACGCCGTTTCGAGCCATGTTCTCTTGAAATCTGCTGGCAAAATGGACAGAGATGTCGTTCTTCGCCGCATTCGTTTTTATAAGCGATTGAACAAAGTGAAGAGGACCTTGGAAAGTCTTGTCGGTAGCGGCGACGGTGGTTCGGAGGTTGCAAATGCGATGGCAGATGAGGCCGAGAAATGGTGGCTGCAGCAGCATGATGTTTTTTTTTGGGTAATTGAATCGTGGATGGTTTTGGTGATTCTCGATTATTCTCTTCCAATTTGGGTGTGA

Protein sequence

MAFVISKASSSFSETENPGDSDLSRNDAVSSHVLLKSAGKMDRDVVLRRIRFYKRLNKVKRTLESLVGSGDGGSEVANAMADEAEKWWLQQHDVFFWVIESWMVLVILDYSLPIWV*

Homology

[Close]

BLAST of MELO3C007512 vs. TrEMBL
Match: A0A0A0KFI9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G489630 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 4.5e-41
Identity = 87/95 (91.58%), Postives = 90/95 (94.74%), Query Frame = 1


Query: 1  MAFVISKASSSFSETENPGDSDLSRNDAVSSHVLLKSAGKMDRDVVLRRIRFYKRLNKVK 60
          MAF+ISKAS+SF ETENP +SDLSRND VSSHV LKSAGKMDRDVVLRRIRFYKRLNKVK
Sbjct: 1  MAFMISKASTSFPETENPRNSDLSRNDGVSSHVFLKSAGKMDRDVVLRRIRFYKRLNKVK 60

Query: 61 RTLESLVGSGDGGSEVANAMADEAEKWWLQQHDVF 96
          RTLESLVGSGDGGSEVANAMADE EKWWLQQHDVF
Sbjct: 61 RTLESLVGSGDGGSEVANAMADEGEKWWLQQHDVF 95

[Close]

BLAST of MELO3C007512 vs. TrEMBL
Match: M5VVD5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017543mg PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 7.0e-10
Identity = 49/105 (46.67%), Postives = 68/105 (64.76%), Query Frame = 1


Query: 1   MAFVISKASS-----SFSETENP-GDSDLS--RNDAVSSHVLLKSAG--KMDRDVVLRRI 60
           MAF+IS+A+      SFSE E   G  +LS  ++ +++SHV LKS+    MDRDVVLRRI
Sbjct: 1   MAFIISRATPQQKQPSFSEAEKKDGHKELSEAQSSSITSHVYLKSSAGAPMDRDVVLRRI 60

Query: 61  RFYKRLNKVKRTLESLVGSGDGGSEVANAMADEAEKWWLQQHDVF 96
           R +K L+KVK   +SL+GS    S+ A +MA   ++ WL Q D+F
Sbjct: 61  RHHKNLSKVKSAFQSLMGS----SQEAASMA-SVDQTWLHQEDIF 100

[Close]

BLAST of MELO3C007512 vs. TrEMBL
Match: M5WA34_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013785mg PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.6e-09
Identity = 49/105 (46.67%), Postives = 66/105 (62.86%), Query Frame = 1


Query: 1   MAFVISKA-----SSSFSETENP-GDSDLS--RNDAVSSHVLLKS--AGKMDRDVVLRRI 60
           MAF+ISKA       SFSE E   G  +LS  ++ +++ HV LKS  A  MDRDVVLRRI
Sbjct: 1   MAFIISKAPPQQKQPSFSEAEKKDGHEELSEAQSSSITRHVYLKSSAAAAMDRDVVLRRI 60

Query: 61  RFYKRLNKVKRTLESLVGSGDGGSEVANAMADEAEKWWLQQHDVF 96
           R +K L+KVK   ++L+GS    S+ A +MA   ++ WL Q D+F
Sbjct: 61  RHHKNLSKVKSAFQALMGS----SQEAASMA-SVDQTWLHQEDIF 100

[Close]

BLAST of MELO3C007512 vs. TrEMBL
Match: B9H6B2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s13930g PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.6e-06
Identity = 39/102 (38.24%), Postives = 59/102 (57.84%), Query Frame = 1


Query: 1   MAFVISKASSSFSETE--NPGDSDLSRNDA----VSSHVLLKSA-GKMDRDVVLRRIRFY 60
           M+FV+SKA  SFSE E  N    ++  N A    +S+ + LK A   M++DV+L+RIR +
Sbjct: 16  MSFVVSKAPQSFSENEKLNLKHREVEDNQALTNPISNQLHLKPAVHAMEKDVILKRIRHH 75

Query: 61  KRLNKVKRTLESLVGSGDGGSEVANAMADEAEKWWLQQHDVF 96
           K +NKVK+  ++L  S      +A+A     ++ WL  HD F
Sbjct: 76  KSVNKVKKAFQALAASSLDQENMASAY----QQKWLDPHDAF 113

[Close]

BLAST of MELO3C007512 vs. TrEMBL
Match: W9R2Z9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_020297 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 6.1e-06
Identity = 41/105 (39.05%), Postives = 58/105 (55.24%), Query Frame = 1


Query: 1  MAFVISKASSSFS--ETENPGDSDLSRNDAVSSHVLLKSAGK--------MDRDVVLRRI 60
          MAFVIS+A  SFS  E E     D  R   ++S + LKS+          +++DVVLRRI
Sbjct: 1  MAFVISEAQQSFSHSEAEKVTQQD-DRPSPITSQLYLKSSSSSSSSSKANLNKDVVLRRI 60

Query: 61 RFYKRLNKVKRTLESLVGSGDGGSEVANAMADEAEKWWLQQHDVF 96
          R +K LNKV+   + L+ S D         ++EA++ WL Q+D F
Sbjct: 61 RHHKCLNKVRSAFQGLLVSSD---------SEEAQQKWLDQNDSF 95

[Close]

BLAST of MELO3C007512 vs. NCBI nr
Match: gi|700193266|gb|KGN48470.1| (hypothetical protein Csa_6G489630 [Cucumis sativus])

HSP 1 Score: 175.3 bits (443), Expect = 6.5e-41
Identity = 87/95 (91.58%), Postives = 90/95 (94.74%), Query Frame = 1


Query: 1  MAFVISKASSSFSETENPGDSDLSRNDAVSSHVLLKSAGKMDRDVVLRRIRFYKRLNKVK 60
          MAF+ISKAS+SF ETENP +SDLSRND VSSHV LKSAGKMDRDVVLRRIRFYKRLNKVK
Sbjct: 1  MAFMISKASTSFPETENPRNSDLSRNDGVSSHVFLKSAGKMDRDVVLRRIRFYKRLNKVK 60

Query: 61 RTLESLVGSGDGGSEVANAMADEAEKWWLQQHDVF 96
          RTLESLVGSGDGGSEVANAMADE EKWWLQQHDVF
Sbjct: 61 RTLESLVGSGDGGSEVANAMADEGEKWWLQQHDVF 95

[Close]

BLAST of MELO3C007512 vs. NCBI nr
Match: gi|595817095|ref|XP_007204160.1| (hypothetical protein PRUPE_ppa017543mg [Prunus persica])

HSP 1 Score: 71.6 bits (174), Expect = 1.0e-09
Identity = 49/105 (46.67%), Postives = 68/105 (64.76%), Query Frame = 1


Query: 1   MAFVISKASS-----SFSETENP-GDSDLS--RNDAVSSHVLLKSAG--KMDRDVVLRRI 60
           MAF+IS+A+      SFSE E   G  +LS  ++ +++SHV LKS+    MDRDVVLRRI
Sbjct: 1   MAFIISRATPQQKQPSFSEAEKKDGHKELSEAQSSSITSHVYLKSSAGAPMDRDVVLRRI 60

Query: 61  RFYKRLNKVKRTLESLVGSGDGGSEVANAMADEAEKWWLQQHDVF 96
           R +K L+KVK   +SL+GS    S+ A +MA   ++ WL Q D+F
Sbjct: 61  RHHKNLSKVKSAFQSLMGS----SQEAASMA-SVDQTWLHQEDIF 100

[Close]

BLAST of MELO3C007512 vs. NCBI nr
Match: gi|595821987|ref|XP_007204909.1| (hypothetical protein PRUPE_ppa013785mg [Prunus persica])

HSP 1 Score: 70.5 bits (171), Expect = 2.2e-09
Identity = 49/105 (46.67%), Postives = 66/105 (62.86%), Query Frame = 1


Query: 1   MAFVISKA-----SSSFSETENP-GDSDLS--RNDAVSSHVLLKS--AGKMDRDVVLRRI 60
           MAF+ISKA       SFSE E   G  +LS  ++ +++ HV LKS  A  MDRDVVLRRI
Sbjct: 1   MAFIISKAPPQQKQPSFSEAEKKDGHEELSEAQSSSITRHVYLKSSAAAAMDRDVVLRRI 60

Query: 61  RFYKRLNKVKRTLESLVGSGDGGSEVANAMADEAEKWWLQQHDVF 96
           R +K L+KVK   ++L+GS    S+ A +MA   ++ WL Q D+F
Sbjct: 61  RHHKNLSKVKSAFQALMGS----SQEAASMA-SVDQTWLHQEDIF 100

[Close]

BLAST of MELO3C007512 vs. NCBI nr
Match: gi|224084233|ref|XP_002307238.1| (hypothetical protein POPTR_0005s13930g [Populus trichocarpa])

HSP 1 Score: 59.3 bits (142), Expect = 5.2e-06
Identity = 39/102 (38.24%), Postives = 59/102 (57.84%), Query Frame = 1


Query: 1   MAFVISKASSSFSETE--NPGDSDLSRNDA----VSSHVLLKSA-GKMDRDVVLRRIRFY 60
           M+FV+SKA  SFSE E  N    ++  N A    +S+ + LK A   M++DV+L+RIR +
Sbjct: 16  MSFVVSKAPQSFSENEKLNLKHREVEDNQALTNPISNQLHLKPAVHAMEKDVILKRIRHH 75

Query: 61  KRLNKVKRTLESLVGSGDGGSEVANAMADEAEKWWLQQHDVF 96
           K +NKVK+  ++L  S      +A+A     ++ WL  HD F
Sbjct: 76  KSVNKVKKAFQALAASSLDQENMASAY----QQKWLDPHDAF 113

[Close]

BLAST of MELO3C007512 vs. NCBI nr
Match: gi|703071361|ref|XP_010089011.1| (hypothetical protein L484_020297 [Morus notabilis])

HSP 1 Score: 58.5 bits (140), Expect = 8.8e-06
Identity = 41/105 (39.05%), Postives = 58/105 (55.24%), Query Frame = 1


Query: 1  MAFVISKASSSFS--ETENPGDSDLSRNDAVSSHVLLKSAGK--------MDRDVVLRRI 60
          MAFVIS+A  SFS  E E     D  R   ++S + LKS+          +++DVVLRRI
Sbjct: 1  MAFVISEAQQSFSHSEAEKVTQQD-DRPSPITSQLYLKSSSSSSSSSKANLNKDVVLRRI 60

Query: 61 RFYKRLNKVKRTLESLVGSGDGGSEVANAMADEAEKWWLQQHDVF 96
          R +K LNKV+   + L+ S D         ++EA++ WL Q+D F
Sbjct: 61 RHHKCLNKVRSAFQGLLVSSD---------SEEAQQKWLDQNDSF 95

The following BLAST results are available for this feature:

BLAST of MELO3C007512 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFI9_CUCSA	4.5e-41	91.58	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G489630 PE=4 SV=1	[more]
M5VVD5_PRUPE	7.0e-10	46.67	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017543mg PE=4 SV=1	[more]
M5WA34_PRUPE	1.6e-09	46.67	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013785mg PE=4 SV=1	[more]
B9H6B2_POPTR	3.6e-06	38.24	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s13930g PE=4 SV=1	[more]
W9R2Z9_9ROSA	6.1e-06	39.05	Uncharacterized protein OS=Morus notabilis GN=L484_020297 PE=4 SV=1	[more]

BLAST of MELO3C007512 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700193266\|gb\|KGN48470.1\|	6.5e-41	91.58	hypothetical protein Csa_6G489630 [Cucumis sativus]	[more]
gi\|595817095\|ref\|XP_007204160.1\|	1.0e-09	46.67	hypothetical protein PRUPE_ppa017543mg [Prunus persica]	[more]
gi\|595821987\|ref\|XP_007204909.1\|	2.2e-09	46.67	hypothetical protein PRUPE_ppa013785mg [Prunus persica]	[more]
gi\|224084233\|ref\|XP_002307238.1\|	5.2e-06	38.24	hypothetical protein POPTR_0005s13930g [Populus trichocarpa]	[more]
gi\|703071361\|ref\|XP_010089011.1\|	8.8e-06	39.05	hypothetical protein L484_020297 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU50615	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C007512T1	MELO3C007512T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU50615	MU50615	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35324	FAMILY NOT NAMED	coord: 2..98 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C007512	Cla001795	Watermelon (97103) v1	mewmB570
MELO3C007512	ClCG01G016430	Watermelon (Charleston Gray)	mewcgB514
MELO3C007512	Cla97C01G015420	Watermelon (97103) v2	mewmbB513
MELO3C007512	Bhi03G001497	Wax gourd	mewgoB653
MELO3C007512	Cucsa.101950	Cucumber (Gy14) v1	cgymeB131
MELO3C007512	Lsi01G010310	Bottle gourd (USVL1VR-Ls)	lsimeB156
MELO3C007512	CsGy6G026980	Cucumber (Gy14) v2	cgybmeB444
MELO3C007512	CsaV3_6G042740	Cucumber (Chinese Long) v3	cucmeB517

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C007512	Wax gourd	mewgoB625
MELO3C007512	Cucurbita moschata (Rifu)	cmomeB793
MELO3C007512	Melon (DHL92) v3.5.1	memeB132
MELO3C007512	Cucumber (Gy14) v1	cgymeB384
MELO3C007512	Cucumber (Gy14) v1	cgymeB392
MELO3C007512	Cucumber (Gy14) v1	cgymeB598
MELO3C007512	Cucurbita maxima (Rimu)	cmameB586
MELO3C007512	Cucurbita maxima (Rimu)	cmameB617
MELO3C007512	Cucurbita maxima (Rimu)	cmameB745
MELO3C007512	Cucurbita maxima (Rimu)	cmameB809
MELO3C007512	Cucurbita moschata (Rifu)	cmomeB605
MELO3C007512	Cucurbita moschata (Rifu)	cmomeB735
MELO3C007512	Wild cucumber (PI 183967)	cpimeB155
MELO3C007512	Wild cucumber (PI 183967)	cpimeB158
MELO3C007512	Wild cucumber (PI 183967)	cpimeB508
MELO3C007512	Cucumber (Chinese Long) v2	cumeB157
MELO3C007512	Cucumber (Chinese Long) v2	cumeB160
MELO3C007512	Cucumber (Chinese Long) v2	cumeB503
MELO3C007512	Watermelon (Charleston Gray)	mewcgB506
MELO3C007512	Watermelon (Charleston Gray)	mewcgB518
MELO3C007512	Watermelon (Charleston Gray)	mewcgB545
MELO3C007512	Watermelon (97103) v1	mewmB552
MELO3C007512	Watermelon (97103) v1	mewmB558
MELO3C007512	Watermelon (97103) v1	mewmB593
MELO3C007512	Cucurbita pepo (Zucchini)	cpemeB060
MELO3C007512	Cucurbita pepo (Zucchini)	cpemeB111
MELO3C007512	Cucurbita pepo (Zucchini)	cpemeB449
MELO3C007512	Cucurbita pepo (Zucchini)	cpemeB786
MELO3C007512	Bottle gourd (USVL1VR-Ls)	lsimeB120
MELO3C007512	Bottle gourd (USVL1VR-Ls)	lsimeB491
MELO3C007512	Cucumber (Gy14) v2	cgybmeB136
MELO3C007512	Silver-seed gourd	carmeB0188
MELO3C007512	Silver-seed gourd	carmeB0414
MELO3C007512	Silver-seed gourd	carmeB0807
MELO3C007512	Silver-seed gourd	carmeB0881
MELO3C007512	Cucumber (Chinese Long) v3	cucmeB156
MELO3C007512	Cucumber (Chinese Long) v3	cucmeB159
MELO3C007512	Watermelon (97103) v2	mewmbB554
MELO3C007512	Watermelon (97103) v2	mewmbB559