MELO3C007328.2 (gene) Melon (DHL92) v3.6.1

NameMELO3C007328.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionWound-responsive family protein
Locationchr08 : 2211458 .. 2211931 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACCAAACTCCTTCATTTCAAGTTCTTGGAATTTGAACCGGATTTGATTCCACCATCAATTGTTCGTGGCATGAGCAGGGTGTTTGGACAATTCGCGACACGGTGTATACAGAAGACGAGAGATCAGGCCGTGAAGAGCGATCCCGCTGCCTTGAAATCTCTCAAGGATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTAAATGCTACTCCGGTAATAAACTCAGCGCTGGTGAGGGCCAGAATGTTAAGATAGCTGAAGAATCTTTAAGAACTGTCATGTATTTGAGTTGTTGGGCTCCAACTTGATTTATTCATCTCTTGTACTGTTGCTTCAATTGTATTTTTGTAAATGTTCACTTTCTAAATGACATACTTTGATTGAATCTCTACTTTTGTTTTTACGCGATGATGATTATAGATCAACTTATTTTAATTCTGCAAAAGTGAACTTAACTCCCC

mRNA sequence

ACCAAACTCCTTCATTTCAAGTTCTTGGAATTTGAACCGGATTTGATTCCACCATCAATTGTTCGTGGCATGAGCAGGGTGTTTGGACAATTCGCGACACGGTGTATACAGAAGACGAGAGATCAGGCCGTGAAGAGCGATCCCGCTGCCTTGAAATCTCTCAAGGATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTAAATGCTACTCCGGTAATAAACTCAGCGCTGGTGAGGGCCAGAATGTTAAGATAGCTGAAGAATCTTTAAGAACTGTCATGTATTTGAGTTGTTGGGCTCCAACTTGATTTATTCATCTCTTGTACTGTTGCTTCAATTGTATTTTTGTAAATGTTCACTTTCTAAATGACATACTTTGATTGAATCTCTACTTTTGTTTTTACGCGATGATGATTATAGATCAACTTATTTTAATTCTGCAAAAGTGAACTTAACTCCCC

Coding sequence (CDS)

ATGAGCAGGGTGTTTGGACAATTCGCGACACGGTGTATACAGAAGACGAGAGATCAGGCCGTGAAGAGCGATCCCGCTGCCTTGAAATCTCTCAAGGATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTAAATGCTACTCCGGTAATAAACTCAGCGCTGGTGAGGGCCAGAATGTTAAGATAGCTGAAGAATCTTTAAGAACTGTCATGTATTTGAGTTGTTGGGCTCCAACTTGA

Protein sequence

MSRVFGQFATRCIQKTRDQAVKSDPAALKSLKDSSSSSSSSSSSSSSSKCYSGNKLSAGEGQNVKIAEESLRTVMYLSCWAPT
BLAST of MELO3C007328.2 vs. NCBI nr
Match: KGN49179.1 (hypothetical protein Csa_6G516870 [Cucumis sativus])

HSP 1 Score: 117.5 bits (293), Expect = 2.2e-23
Identity = 70/82 (85.37%), Postives = 72/82 (87.80%), Query Frame = 0

Query: 2   SRVFGQFATRCIQKTRDQAVKSDPAALKSLKXXXXXXXXXXXXXXXXXCYSGNKLSAGEG 61
           ++VFGQF TRCIQKTRDQA KSDPAALKSLK       XXXXXXXXXXCYSGNK SAGEG
Sbjct: 36  AQVFGQFVTRCIQKTRDQAAKSDPAALKSLK------DXXXXXXXXXXCYSGNKFSAGEG 95

Query: 62  QNVKIAEESLRTVMYLSCWAPT 84
           QNVKIAEESLRTVMYLSCWAPT
Sbjct: 96  QNVKIAEESLRTVMYLSCWAPT 111

BLAST of MELO3C007328.2 vs. NCBI nr
Match: PNT39352.1 (hypothetical protein POPTR_004G033300v3 [Populus trichocarpa])

HSP 1 Score: 54.3 bits (129), Expect = 2.3e-04
Identity = 32/81 (39.51%), Postives = 42/81 (51.85%), Query Frame = 0

Query: 2  SRVFGQFATRCIQKTRDQAVKSDPAALKSLKXXXXXXXXXXXXXXXXXCYSGNKLSAGEG 61
          SRV  Q   R +Q  +DQA K D +A+KSL+                   S   ++A + 
Sbjct: 7  SRVLYQSGVRVVQGMKDQASKCDSSAIKSLRDSACSSSSKQARRFSGSVDSSAYMNA-KN 66

Query: 62 QNVKIAEESLRTVMYLSCWAP 83
          +  K AEESLRTVM+LSCW P
Sbjct: 67 EKFKQAEESLRTVMFLSCWGP 86

BLAST of MELO3C007328.2 vs. NCBI nr
Match: XP_010277915.1 (PREDICTED: uncharacterized protein LOC104612255 [Nelumbo nucifera])

HSP 1 Score: 52.4 bits (124), Expect = 8.7e-04
Identity = 33/82 (40.24%), Postives = 41/82 (50.00%), Query Frame = 0

Query: 1  MSRVFGQFATRCIQKTRDQAVKSDPAALKSLKXXXXXXXXXXXXXXXXXCYSGNKLSAGE 60
          MSRVF Q  +R +Q  +DQA K D +  KSLK                     + +    
Sbjct: 6  MSRVFYQAGSRAMQGIKDQATKYD-STFKSLKDSTTSSAKVRRFSSAL----DSSVKTPN 65

Query: 61 GQNVKIAEESLRTVMYLSCWAP 83
           + +K AEESLRTVMYLSCW P
Sbjct: 66 TEKLKQAEESLRTVMYLSCWGP 82

BLAST of MELO3C007328.2 vs. TAIR10
Match: AT4G10270.1 (Wound-responsive family protein)

HSP 1 Score: 45.4 bits (106), Expect = 1.9e-05
Identity = 19/26 (73.08%), Postives = 21/26 (80.77%), Query Frame = 0

Query: 57 SAGEGQNVKIAEESLRTVMYLSCWAP 83
          S+GE +  K AEESLRTVMYLSCW P
Sbjct: 64 SSGESEKAKKAEESLRTVMYLSCWGP 89

BLAST of MELO3C007328.2 vs. TrEMBL
Match: tr|A0A0A0KK17|A0A0A0KK17_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G516870 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.5e-23
Identity = 70/82 (85.37%), Postives = 72/82 (87.80%), Query Frame = 0

Query: 2   SRVFGQFATRCIQKTRDQAVKSDPAALKSLKXXXXXXXXXXXXXXXXXCYSGNKLSAGEG 61
           ++VFGQF TRCIQKTRDQA KSDPAALKSLK       XXXXXXXXXXCYSGNK SAGEG
Sbjct: 36  AQVFGQFVTRCIQKTRDQAAKSDPAALKSLK------DXXXXXXXXXXCYSGNKFSAGEG 95

Query: 62  QNVKIAEESLRTVMYLSCWAPT 84
           QNVKIAEESLRTVMYLSCWAPT
Sbjct: 96  QNVKIAEESLRTVMYLSCWAPT 111

BLAST of MELO3C007328.2 vs. TrEMBL
Match: tr|A0A2N9IFS9|A0A2N9IFS9_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS50946 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.2e-04
Identity = 35/86 (40.70%), Postives = 42/86 (48.84%), Query Frame = 0

Query: 1  MSRVFGQFATRCIQKTRDQAVKSDPA--ALKSLKXXXXXXXXXXXXXXXXXCYSGNKLSA 60
          MSR+  Q   R IQ  +DQA K D    +L SL+                 C S    +A
Sbjct: 6  MSRILYQSGMRVIQGMKDQASKCDSTVNSLVSLRDSSYSSSAKQARRFSRACDSAASKAA 65

Query: 61 G--EGQNVKIAEESLRTVMYLSCWAP 83
             E + VK+AEESLR VMYLSCW P
Sbjct: 66 ANRENEKVKLAEESLRIVMYLSCWGP 91

BLAST of MELO3C007328.2 vs. TrEMBL
Match: tr|B9H210|B9H210_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_004G033300v3 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.5e-04
Identity = 32/81 (39.51%), Postives = 42/81 (51.85%), Query Frame = 0

Query: 2  SRVFGQFATRCIQKTRDQAVKSDPAALKSLKXXXXXXXXXXXXXXXXXCYSGNKLSAGEG 61
          SRV  Q   R +Q  +DQA K D +A+KSL+                   S   ++A + 
Sbjct: 7  SRVLYQSGVRVVQGMKDQASKCDSSAIKSLRDSACSSSSKQARRFSGSVDSSAYMNA-KN 66

Query: 62 QNVKIAEESLRTVMYLSCWAP 83
          +  K AEESLRTVM+LSCW P
Sbjct: 67 EKFKQAEESLRTVMFLSCWGP 86

BLAST of MELO3C007328.2 vs. TrEMBL
Match: tr|A0A1U8BKY4|A0A1U8BKY4_NELNU (uncharacterized protein LOC104612255 OS=Nelumbo nucifera OX=4432 GN=LOC104612255 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 5.8e-04
Identity = 33/82 (40.24%), Postives = 41/82 (50.00%), Query Frame = 0

Query: 1  MSRVFGQFATRCIQKTRDQAVKSDPAALKSLKXXXXXXXXXXXXXXXXXCYSGNKLSAGE 60
          MSRVF Q  +R +Q  +DQA K D +  KSLK                     + +    
Sbjct: 6  MSRVFYQAGSRAMQGIKDQATKYD-STFKSLKDSTTSSAKVRRFSSAL----DSSVKTPN 65

Query: 61 GQNVKIAEESLRTVMYLSCWAP 83
           + +K AEESLRTVMYLSCW P
Sbjct: 66 TEKLKQAEESLRTVMYLSCWGP 82

BLAST of MELO3C007328.2 vs. TrEMBL
Match: tr|I3SRP7|I3SRP7_MEDTR (Wound-responsive family protein OS=Medicago truncatula OX=3880 GN=25485919 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 9.8e-04
Identity = 35/85 (41.18%), Postives = 43/85 (50.59%), Query Frame = 0

Query: 1  MSRVFGQFATRCIQKTRDQAVKSDPAALKSLKXXXXXXXXXXXXXXXXXCYSGNKLSAGE 60
          + RV  Q A R  Q  +DQ+ K D + +KSL+                  +  N  SA +
Sbjct: 6  IGRVLYQTAMRTFQGMKDQSSKCD-STIKSLRDSTSSKQVKARVFSNNTAFE-NSSSAFK 65

Query: 61 GQN---VKIAEESLRTVMYLSCWAP 83
          G N   VK AEESLRTVMYLSCW P
Sbjct: 66 GSNSDKVKRAEESLRTVMYLSCWGP 88

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN49179.12.2e-2385.37hypothetical protein Csa_6G516870 [Cucumis sativus][more]
PNT39352.12.3e-0439.51hypothetical protein POPTR_004G033300v3 [Populus trichocarpa][more]
XP_010277915.18.7e-0440.24PREDICTED: uncharacterized protein LOC104612255 [Nelumbo nucifera][more]
Match NameE-valueIdentityDescription
AT4G10270.11.9e-0573.08Wound-responsive family protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0KK17|A0A0A0KK17_CUCSA1.5e-2385.37Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G516870 PE=4 SV=1[more]
tr|A0A2N9IFS9|A0A2N9IFS9_FAGSY1.2e-0440.70Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS50946 PE=4 SV=1[more]
tr|B9H210|B9H210_POPTR1.5e-0439.51Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_004G033300v3 PE=... [more]
tr|A0A1U8BKY4|A0A1U8BKY4_NELNU5.8e-0440.24uncharacterized protein LOC104612255 OS=Nelumbo nucifera OX=4432 GN=LOC104612255... [more]
tr|I3SRP7|I3SRP7_MEDTR9.8e-0441.18Wound-responsive family protein OS=Medicago truncatula OX=3880 GN=25485919 PE=2 ... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR022251DUF3774_wound-induced
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C007328.2.1MELO3C007328.2.1mRNA


Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022251Protein of unknown function wound-inducedPFAMPF12609DUF3774coord: 14..82
e-value: 1.8E-12
score: 48.0
IPR022251Protein of unknown function wound-inducedPANTHERPTHR33090FAMILY NOT NAMEDcoord: 1..82
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..57
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..57
NoneNo IPR availablePANTHERPTHR33090:SF21SUBFAMILY NOT NAMEDcoord: 1..82

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C007328.2Cucumber (Gy14) v2cgybmedB072
MELO3C007328.2Cucurbita maxima (Rimu)cmamedB233
MELO3C007328.2Cucumber (Gy14) v1cgymedB199
MELO3C007328.2Cucumber (Gy14) v1cgymedB247
MELO3C007328.2Cucurbita maxima (Rimu)cmamedB046
MELO3C007328.2Cucurbita maxima (Rimu)cmamedB158
MELO3C007328.2Cucurbita maxima (Rimu)cmamedB441
MELO3C007328.2Cucurbita maxima (Rimu)cmamedB519
MELO3C007328.2Cucurbita maxima (Rimu)cmamedB564
MELO3C007328.2Cucurbita maxima (Rimu)cmamedB667
MELO3C007328.2Cucurbita maxima (Rimu)cmamedB897
MELO3C007328.2Cucurbita moschata (Rifu)cmomedB037
MELO3C007328.2Cucurbita moschata (Rifu)cmomedB147
MELO3C007328.2Cucurbita moschata (Rifu)cmomedB217
MELO3C007328.2Cucurbita moschata (Rifu)cmomedB428
MELO3C007328.2Cucurbita moschata (Rifu)cmomedB507
MELO3C007328.2Cucurbita moschata (Rifu)cmomedB552
MELO3C007328.2Cucurbita moschata (Rifu)cmomedB657
MELO3C007328.2Cucurbita moschata (Rifu)cmomedB886
MELO3C007328.2Cucurbita pepo (Zucchini)cpemedB091
MELO3C007328.2Cucurbita pepo (Zucchini)cpemedB540
MELO3C007328.2Cucurbita pepo (Zucchini)cpemedB572
MELO3C007328.2Cucurbita pepo (Zucchini)cpemedB773
MELO3C007328.2Cucurbita pepo (Zucchini)cpemedB841
MELO3C007328.2Wild cucumber (PI 183967)cpimedB076
MELO3C007328.2Wild cucumber (PI 183967)cpimedB560
MELO3C007328.2Cucumber (Chinese Long) v2cumedB077
MELO3C007328.2Cucumber (Chinese Long) v2cumedB541
MELO3C007328.2Melon (DHL92) v3.6.1medmedB074
MELO3C007328.2Melon (DHL92) v3.6.1medmedB099
MELO3C007328.2Bottle gourd (USVL1VR-Ls)lsimedB126
MELO3C007328.2Bottle gourd (USVL1VR-Ls)lsimedB239
MELO3C007328.2Watermelon (Charleston Gray)medwcgB514
MELO3C007328.2Watermelon (Charleston Gray)medwcgB519
MELO3C007328.2Watermelon (97103) v1medwmB550
MELO3C007328.2Watermelon (97103) v1medwmB582
MELO3C007328.2Silver-seed gourdcarmedB0035
MELO3C007328.2Silver-seed gourdcarmedB0156
MELO3C007328.2Silver-seed gourdcarmedB0652
MELO3C007328.2Silver-seed gourdcarmedB0875
MELO3C007328.2Silver-seed gourdcarmedB0925
MELO3C007328.2Silver-seed gourdcarmedB0937
MELO3C007328.2Cucumber (Chinese Long) v3cucmedB085
MELO3C007328.2Cucumber (Chinese Long) v3cucmedB576
MELO3C007328.2Watermelon (97103) v2medwmbB524
MELO3C007328.2Wax gourdmedwgoB674