CmoCh03G005150 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh03G005150
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionWound-responsive family protein
LocationCmo_Chr03 : 5359268 .. 5359495 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCAAGGTATTGGGCCAATTCGCGGCACGGTTTGTTCAGAGGACGAGAGATCAGGCTATGAAGAGCGATCCCGCTGCCTTGAAATCTCTCAAGGATTCAACTTCTTCTTCTTCTTCCAGGTGCTACTCCGGCAACAAACTCGTCGCCGGTGAGGACCGGAAGGTTAAGACAGCCGAAGAATCCTTAAGAACCGTCATGTATTTGAGCTGTTGGGCTCCTACTTGA

mRNA sequence

ATGAGCAAGGTATTGGGCCAATTCGCGGCACGGTTTGTTCAGAGGACGAGAGATCAGGCTATGAAGAGCGATCCCGCTGCCTTGAAATCTCTCAAGGATTCAACTTCTTCTTCTTCTTCCAGGTGCTACTCCGGCAACAAACTCGTCGCCGGTGAGGACCGGAAGGTTAAGACAGCCGAAGAATCCTTAAGAACCGTCATGTATTTGAGCTGTTGGGCTCCTACTTGA

Coding sequence (CDS)

ATGAGCAAGGTATTGGGCCAATTCGCGGCACGGTTTGTTCAGAGGACGAGAGATCAGGCTATGAAGAGCGATCCCGCTGCCTTGAAATCTCTCAAGGATTCAACTTCTTCTTCTTCTTCCAGGTGCTACTCCGGCAACAAACTCGTCGCCGGTGAGGACCGGAAGGTTAAGACAGCCGAAGAATCCTTAAGAACCGTCATGTATTTGAGCTGTTGGGCTCCTACTTGA
Homology
[Close]
BLAST of CmoCh03G005150 vs. TrEMBL
Match: A0A0A0KK17_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G516870 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.5e-21
Identity = 57/76 (75.00%), Postives = 64/76 (84.21%), Query Frame = 1 

Query: 2   SKVLGQFAARFVQRTRDQAMKSDPAALKSLKD--STSSSSSRCYSGNKLVAGEDRKVKTA 61
           ++V GQF  R +Q+TRDQA KSDPAALKSLKD  S+SSSSS+CYSGNK  AGE + VK A
Sbjct: 36  AQVFGQFVTRCIQKTRDQAAKSDPAALKSLKDSSSSSSSSSKCYSGNKFSAGEGQNVKIA 95

Query: 62  EESLRTVMYLSCWAPT 76
           EESLRTVMYLSCWAPT
Sbjct: 96  EESLRTVMYLSCWAPT 111

[Close]
BLAST of CmoCh03G005150 vs. TrEMBL
Match: B9H210_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s03330g PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.9e-08
Identity = 41/80 (51.25%), Postives = 52/80 (65.00%), Query Frame = 1 

Query: 2  SKVLGQFAARFVQRTRDQAMKSDPAALKSLKDSTSSSSS---RCYSG----NKLVAGEDR 61
          S+VL Q   R VQ  +DQA K D +A+KSL+DS  SSSS   R +SG    +  +  ++ 
Sbjct: 7  SRVLYQSGVRVVQGMKDQASKCDSSAIKSLRDSACSSSSKQARRFSGSVDSSAYMNAKNE 66

Query: 62 KVKTAEESLRTVMYLSCWAP 75
          K K AEESLRTVM+LSCW P
Sbjct: 67 KFKQAEESLRTVMFLSCWGP 86

[Close]
BLAST of CmoCh03G005150 vs. TrEMBL
Match: A0A067JLI7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21346 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 6.1e-07
Identity = 39/84 (46.43%), Postives = 50/84 (59.52%), Query Frame = 1 

Query: 1  MSKVLGQFAARFVQRTRDQAMKSDPAALKSLKDSTSSSSS-----RCYSG-----NKLVA 60
          MSKV+ Q   R VQ  ++   K   + +KSL+DST +SSS     R +SG         A
Sbjct: 6  MSKVVYQAGMRVVQGIKEPVSKCTDSTIKSLRDSTCASSSSSKQARLFSGAVSDSGAFKA 65

Query: 61 GEDRKVKTAEESLRTVMYLSCWAP 75
           ++ K+K AEESLRTVMYLSCW P
Sbjct: 66 NKNDKLKQAEESLRTVMYLSCWGP 89

[Close]
BLAST of CmoCh03G005150 vs. TrEMBL
Match: A0A067GK87_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034643mg PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.0e-06
Identity = 39/82 (47.56%), Postives = 48/82 (58.54%), Query Frame = 1 

Query: 2  SKVLGQFAARFVQRTRDQAMKSDPAALKSLKDSTSSSSS-----RCYS----GNKLVAGE 61
          S++  Q   R +Q  RDQA K D +A KSLKDS S+ SS     RC+S         +  
Sbjct: 7  SRLCYQAGMRLMQVVRDQASKGD-SAFKSLKDSASACSSSSKQARCFSTAADSTAFKSAR 66

Query: 62 DRKVKTAEESLRTVMYLSCWAP 75
            K++ AEESLRTVMYLSCW P
Sbjct: 67 SEKLRQAEESLRTVMYLSCWGP 87

[Close]
BLAST of CmoCh03G005150 vs. TrEMBL
Match: V4UE40_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017323mg PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.4e-06
Identity = 39/82 (47.56%), Postives = 48/82 (58.54%), Query Frame = 1 

Query: 2  SKVLGQFAARFVQRTRDQAMKSDPAALKSLKDSTSSSSS-----RCYSG----NKLVAGE 61
          S++  Q   R +Q  RDQA K D +A KSLKDS S+ SS     RC+S         +  
Sbjct: 7  SRLCYQAGMRVMQVVRDQASKGD-SAFKSLKDSASACSSSSKQARCFSAAADSTAFKSAR 66

Query: 62 DRKVKTAEESLRTVMYLSCWAP 75
            K++ AEESLRTVMYLSCW P
Sbjct: 67 SEKLRQAEESLRTVMYLSCWGP 87

[Close]
BLAST of CmoCh03G005150 vs. TAIR10
Match: AT4G10270.1 (AT4G10270.1 Wound-responsive family protein)

HSP 1 Score: 46.6 bits (109), Expect = 7.8e-06
Identity = 28/70 (40.00%), Postives = 41/70 (58.57%), Query Frame = 1 

Query: 5  LGQFAARFVQRTRDQAMKSDPAALKSLKDSTSSSSSRCYSGNKLVAGEDRKVKTAEESLR 64
          LG     ++ R+ +Q ++++  ++   K  +SSS S   + +    GE  K K AEESLR
Sbjct: 24 LGLCRWNYILRSVNQHLRNNVRSVSQGKRFSSSSVSAAVTSS----GESEKAKKAEESLR 83

Query: 65 TVMYLSCWAP 75
          TVMYLSCW P
Sbjct: 84 TVMYLSCWGP 89

[Close]
BLAST of CmoCh03G005150 vs. NCBI nr
Match: gi|700193975|gb|KGN49179.1| (hypothetical protein Csa_6G516870 [Cucumis sativus])

HSP 1 Score: 109.8 bits (273), Expect = 2.1e-21
Identity = 57/76 (75.00%), Postives = 64/76 (84.21%), Query Frame = 1 

Query: 2   SKVLGQFAARFVQRTRDQAMKSDPAALKSLKD--STSSSSSRCYSGNKLVAGEDRKVKTA 61
           ++V GQF  R +Q+TRDQA KSDPAALKSLKD  S+SSSSS+CYSGNK  AGE + VK A
Sbjct: 36  AQVFGQFVTRCIQKTRDQAAKSDPAALKSLKDSSSSSSSSSKCYSGNKFSAGEGQNVKIA 95

Query: 62  EESLRTVMYLSCWAPT 76
           EESLRTVMYLSCWAPT
Sbjct: 96  EESLRTVMYLSCWAPT 111

[Close]
BLAST of CmoCh03G005150 vs. NCBI nr
Match: gi|224076777|ref|XP_002304995.1| (hypothetical protein POPTR_0004s03330g [Populus trichocarpa])

HSP 1 Score: 66.2 bits (160), Expect = 2.7e-08
Identity = 41/80 (51.25%), Postives = 52/80 (65.00%), Query Frame = 1 

Query: 2  SKVLGQFAARFVQRTRDQAMKSDPAALKSLKDSTSSSSS---RCYSG----NKLVAGEDR 61
          S+VL Q   R VQ  +DQA K D +A+KSL+DS  SSSS   R +SG    +  +  ++ 
Sbjct: 7  SRVLYQSGVRVVQGMKDQASKCDSSAIKSLRDSACSSSSKQARRFSGSVDSSAYMNAKNE 66

Query: 62 KVKTAEESLRTVMYLSCWAP 75
          K K AEESLRTVM+LSCW P
Sbjct: 67 KFKQAEESLRTVMFLSCWGP 86

[Close]
BLAST of CmoCh03G005150 vs. NCBI nr
Match: gi|697117648|ref|XP_009612767.1| (PREDICTED: uncharacterized protein LOC104106016 [Nicotiana tomentosiformis])

HSP 1 Score: 64.3 bits (155), Expect = 1.0e-07
Identity = 40/85 (47.06%), Postives = 53/85 (62.35%), Query Frame = 1 

Query: 1  MSKV--LGQFAARFVQRTRDQAMKSDPAALKSLKDSTS-----SSSSRCYSG----NKLV 60
          MS+V  L Q   R +Q  +DQA++   + +K+LKDS+S     S  +R +SG    N L 
Sbjct: 3  MSRVAALQQAVMRMIQGVKDQAIRRGDSGIKTLKDSSSCGGSSSKQTRKFSGALDSNSLQ 62

Query: 61 AGEDRKVKTAEESLRTVMYLSCWAP 75
          A +  K+K AEESLRTVMYLSCW P
Sbjct: 63 AAKSEKIKQAEESLRTVMYLSCWGP 87

[Close]
BLAST of CmoCh03G005150 vs. NCBI nr
Match: gi|643703811|gb|KDP20875.1| (hypothetical protein JCGZ_21346 [Jatropha curcas])

HSP 1 Score: 61.2 bits (147), Expect = 8.7e-07
Identity = 39/84 (46.43%), Postives = 50/84 (59.52%), Query Frame = 1 

Query: 1  MSKVLGQFAARFVQRTRDQAMKSDPAALKSLKDSTSSSSS-----RCYSG-----NKLVA 60
          MSKV+ Q   R VQ  ++   K   + +KSL+DST +SSS     R +SG         A
Sbjct: 6  MSKVVYQAGMRVVQGIKEPVSKCTDSTIKSLRDSTCASSSSSKQARLFSGAVSDSGAFKA 65

Query: 61 GEDRKVKTAEESLRTVMYLSCWAP 75
           ++ K+K AEESLRTVMYLSCW P
Sbjct: 66 NKNDKLKQAEESLRTVMYLSCWGP 89

[Close]
BLAST of CmoCh03G005150 vs. NCBI nr
Match: gi|698428851|ref|XP_009790470.1| (PREDICTED: uncharacterized protein LOC104237931 [Nicotiana sylvestris])

HSP 1 Score: 60.5 bits (145), Expect = 1.5e-06
Identity = 38/81 (46.91%), Postives = 51/81 (62.96%), Query Frame = 1 

Query: 1  MSKV--LGQFAARFVQRTRDQAMKSDPAALKSLKDSTS-----SSSSRCYSGNKLVAGED 60
          MS+V  L Q   + +Q  +DQA +   + +K+LKDS+S     S  +R +SG  L A + 
Sbjct: 3  MSRVVALQQAVMKMIQGVKDQATRRGDSGIKTLKDSSSCGGSSSRQTRKFSG-ALKAAKS 62

Query: 61 RKVKTAEESLRTVMYLSCWAP 75
           K+K AEESLRTVMYLSCW P
Sbjct: 63 EKIKRAEESLRTVMYLSCWGP 82

The following BLAST results are available for this feature:
BLAST of CmoCh03G005150 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh03G005150 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KK17_CUCSA1.5e-2175.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G516870 PE=4 SV=1[more]
B9H210_POPTR1.9e-0851.25Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s03330g PE=4 SV=1[more]
A0A067JLI7_JATCU6.1e-0746.43Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21346 PE=4 SV=1[more]
A0A067GK87_CITSI1.0e-0647.56Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034643mg PE=4 SV=1[more]
V4UE40_9ROSI1.4e-0647.56Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017323mg PE=4 SV=1[more]
BLAST of CmoCh03G005150 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G10270.17.8e-0640.00 Wound-responsive family protein[more]
BLAST of CmoCh03G005150 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193975|gb|KGN49179.1|2.1e-2175.00hypothetical protein Csa_6G516870 [Cucumis sativus][more]
gi|224076777|ref|XP_002304995.1|2.7e-0851.25hypothetical protein POPTR_0004s03330g [Populus trichocarpa][more]
gi|697117648|ref|XP_009612767.1|1.0e-0747.06PREDICTED: uncharacterized protein LOC104106016 [Nicotiana tomentosiformis][more]
gi|643703811|gb|KDP20875.1|8.7e-0746.43hypothetical protein JCGZ_21346 [Jatropha curcas][more]
gi|698428851|ref|XP_009790470.1|1.5e-0646.91PREDICTED: uncharacterized protein LOC104237931 [Nicotiana sylvestris][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR022251DUF3774_wound-induced
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh03G005150.1CmoCh03G005150.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022251Protein of unknown function wound-inducedPFAMPF12609DUF3774coord: 13..74
score: 2.2
NoneNo IPR availablePANTHERPTHR33090FAMILY NOT NAMEDcoord: 1..75
score: 4.3
NoneNo IPR availablePANTHERPTHR33090:SF2SUBFAMILY NOT NAMEDcoord: 1..75
score: 4.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh03G005150CmaCh03G004960Cucurbita maxima (Rimu)cmacmoB653
CmoCh03G005150Cla001343Watermelon (97103) v1cmowmB623
CmoCh03G005150Csa6G516870Cucumber (Chinese Long) v2cmocuB670
CmoCh03G005150MELO3C007328Melon (DHL92) v3.5.1cmomeB600
CmoCh03G005150ClCG01G022480Watermelon (Charleston Gray)cmowcgB575
CmoCh03G005150CSPI06G34150Wild cucumber (PI 183967)cmocpiB681
CmoCh03G005150Lsi01G003620Bottle gourd (USVL1VR-Ls)cmolsiB582
CmoCh03G005150MELO3C007328.2Melon (DHL92) v3.6.1cmomedB686
CmoCh03G005150CsaV3_6G049650Cucumber (Chinese Long) v3cmocucB0793
CmoCh03G005150Cla97C01G022350Watermelon (97103) v2cmowmbB642
CmoCh03G005150Bhi03G000378Wax gourdcmowgoB0781
CmoCh03G005150CsGy6G033780Cucumber (Gy14) v2cgybcmoB811
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh03G005150Cucurbita moschata (Rifu)cmocmoB182
CmoCh03G005150Cucurbita moschata (Rifu)cmocmoB335
CmoCh03G005150Cucurbita moschata (Rifu)cmocmoB362
CmoCh03G005150Cucurbita moschata (Rifu)cmocmoB394
CmoCh03G005150Cucurbita moschata (Rifu)cmocmoB428
CmoCh03G005150Cucurbita moschata (Rifu)cmocmoB455
CmoCh03G005150Cucumber (Gy14) v1cgycmoB0042
CmoCh03G005150Cucurbita maxima (Rimu)cmacmoB235
CmoCh03G005150Cucurbita maxima (Rimu)cmacmoB529
CmoCh03G005150Cucurbita maxima (Rimu)cmacmoB858
CmoCh03G005150Wild cucumber (PI 183967)cmocpiB648
CmoCh03G005150Cucumber (Chinese Long) v2cmocuB637
CmoCh03G005150Melon (DHL92) v3.5.1cmomeB581
CmoCh03G005150Watermelon (Charleston Gray)cmowcgB576
CmoCh03G005150Watermelon (Charleston Gray)cmowcgB583
CmoCh03G005150Watermelon (97103) v1cmowmB614
CmoCh03G005150Watermelon (97103) v1cmowmB640
CmoCh03G005150Cucurbita pepo (Zucchini)cmocpeB606
CmoCh03G005150Cucurbita pepo (Zucchini)cmocpeB609
CmoCh03G005150Cucurbita pepo (Zucchini)cmocpeB631
CmoCh03G005150Cucurbita pepo (Zucchini)cmocpeB624
CmoCh03G005150Bottle gourd (USVL1VR-Ls)cmolsiB581
CmoCh03G005150Bottle gourd (USVL1VR-Ls)cmolsiB596
CmoCh03G005150Cucumber (Gy14) v2cgybcmoB116
CmoCh03G005150Melon (DHL92) v3.6.1cmomedB667
CmoCh03G005150Melon (DHL92) v3.6.1cmomedB670
CmoCh03G005150Silver-seed gourdcarcmoB0045
CmoCh03G005150Silver-seed gourdcarcmoB0886
CmoCh03G005150Silver-seed gourdcarcmoB1186
CmoCh03G005150Silver-seed gourdcarcmoB1246
CmoCh03G005150Cucumber (Chinese Long) v3cmocucB0760
CmoCh03G005150Cucumber (Chinese Long) v3cmocucB0797
CmoCh03G005150Watermelon (97103) v2cmowmbB650
CmoCh03G005150Watermelon (97103) v2cmowmbB656