MELO3C007190.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C007190.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionSplicing factor 3B, subunit 5
Locationchr08 : 1371352 .. 1373385 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTTTTGTTAAAGTAGATAAAATAATCATAATATATTGTTATTAAAAAAACCATATCGACTCTCAAAGTTTTGTTCATCATTTATGCTTTTGGGGTTTGACTAAAAGAAATTGTTAGGGGGTGGGGTTCTTCTTGAAACCCTAGGGAGTGAACTGTGCTGGACCTTTCGCTCGCCTGCCTTCTCTGCTTCGTCGCGCCTATTGCAATTTGCGAGCGAACATGCAGGTACGAACTGAACATACAACCTCTTATTCATTGTTTCCTATACTTTTGTATTCCCAATTTGGGTTGTCTTTCACTTTACTTGAGCAGTAATCAAACAGCTCTGCAAGTGATTCCAATTTATTTCATACTTTTCGATTTCAGCTGATTCAACTCTTAGGAGATGAGTTTATAAATTCACTTCTTGTTGATCTTGTAACCCGTTCGTAAGTATCACTCAACCGTTTCGTTTGGTTGATCGGAGGCCTTCCTCTGTTGTGATAGTCTGAATCCTCAAATTATGGGAGATTAGGATTGTTCTATTTTTCATCACTGGGAATAACTCACCACTTAGCTCACGGAGGAAATAAAAGATGTACTTGTATATTTAGCGTTTGTTTATTTTCAGTTGCTATGTAATCCGGGTTATATCATTCTCCTGCAGCCTGCCAATGGGCTCTGCACGAAGCGAGCAACCAGGAATTATAACAATATTATGTTAAATTCTTAATTACGATTCAGTTGGTCAGTCTCATATGAGGATGTCAAGCCCCTTAATCAGCAATTCATCTTTGAAATTTGAGATTGATGGTGGATTCCTGTCATTGCTTAAATTTTCTTTCATTTGACAGCGCGCTAATGTTGGTTTCTTATATTTGATTCAGGCCAGCGATAGATTTAACATCAATTCCCAGCTTGAGCACCTTCAGGCTAAATATGTGGGAACCGGGCATGCCGACTTAAACAGATTGTTAGTTTTCCACTCCCTCTGAATCTCGATCTTCTATTGGTTTTCGTTTTAGTTTTCATGTCTGAATTCACATCTTTGTGTGTACAGTGAGTGGGCAGTGAACATTCAGCGTGATAGCTATGCATCTTATGTTGGACATTACCCCATTCTAGCGTACTTTGCTGTAGCAGAAAATGAATCTATTGGGAGGGAACGCTATAACTTTATGCAGGTTGATTTATTTTTTTTTTCTTTTTGTTTTCTTATTCATAATTTTCCTAGCGAGCTCCCGCTTCTCTCATTCTTAATTTTTTTTTCTTTTGAAACTTCTTCATTCGGTAGAAAATTATCTTAGATTTGTCTTTGTATCTCCTAGCGTCTATCTTCCTATAGTTGTAGTTAATCTTGTACCTCTGAATGTAATGATCAATACCATCTGCTGCACTACCTTAACTTGCCTTTCTCCCATGAACATAACTTTCAAGTCCTATTTTTATATGATTCCGTGGTAATTGTTCCCTTTATACATTTCTTTCTTTTGTTTTCATCCCATCTATATGTATAAACCATCATTTATGAACTTTCAACGTGAATGATTTTAAGTGCATTCAGTGTGTTCGTATGTATTGCTTTTCAGTTTCGAAATGTGGGGTTAACCCAGCAAAATTTCATCATATTTCCTCTTTGGATGTCATTTTGGACATTATTGGGATACATAAAAATGGTTTGTTTTCCTTTCCCTTTTTGCAGAAAATGTTACTACCCTGCGGCCTTCCTCCAGAAAGAGAAGATGATTGAGATTGTTATCATTAAGTAATTTAAGTTGTAGTTAAGATTGCGAATGATTAGACATTATAGGGTTAATGAATTTCTTCTTTATGAACCAACGATGTGTTTGTATGGTAGGAAGTGTACGATTCATTTTTCCATGTTCCGGTTATGTAAGGTTTACGCATTCCCAGGTACTATTTCCTCGACCTCGTCCTTTTTGTTATAAGAACAAGGTCCATCTCATTCATAGTTTATAAAATTGTTTGTAAACTATAATTACATATAATAGCTGTTGGCCTGAAATAATTAAGAAATGGAAGTTTCCATTAGTT

mRNA sequence

TCTTTTGTTAAAGTAGATAAAATAATCATAATATATTGTTATTAAAAAAACCATATCGACTCTCAAAGTTTTGTTCATCATTTATGCTTTTGGGGTTTGACTAAAAGAAATTGTTAGGGGGTGGGGTTCTTCTTGAAACCCTAGGGAGTGAACTGTGCTGGACCTTTCGCTCGCCTGCCTTCTCTGCTTCGTCGCGCCTATTGCAATTTGCGAGCGAACATGCAGGCCAGCGATAGATTTAACATCAATTCCCAGCTTGAGCACCTTCAGGCTAAATATGTGGGAACCGGGCATGCCGACTTAAACAGATTTGAGTGGGCAGTGAACATTCAGCGTGATAGCTATGCATCTTATGTTGGACATTACCCCATTCTAGCGTACTTTGCTGTAGCAGAAAATGAATCTATTGGGAGGGAACGCTATAACTTTATGCAGAAAATGTTACTACCCTGCGGCCTTCCTCCAGAAAGAGAAGATGATTGAGATTGTTATCATTAAGTAATTTAAGTTGTAGTTAAGATTGCGAATGATTAGACATTATAGGGTTAATGAATTTCTTCTTTATGAACCAACGATGTGTTTGTATGGTAGGAAGTGTACGATTCATTTTTCCATGTTCCGGTTATGTAAGGTTTACGCATTCCCAGGTACTATTTCCTCGACCTCGTCCTTTTTGTTATAAGAACAAGGTCCATCTCATTCATAGTTTATAAAATTGTTTGTAAACTATAATTACATATAATAGCTGTTGGCCTGAAATAATTAAGAAATGGAAGTTTCCATTAGTT

Coding sequence (CDS)

ATGCAGGCCAGCGATAGATTTAACATCAATTCCCAGCTTGAGCACCTTCAGGCTAAATATGTGGGAACCGGGCATGCCGACTTAAACAGATTTGAGTGGGCAGTGAACATTCAGCGTGATAGCTATGCATCTTATGTTGGACATTACCCCATTCTAGCGTACTTTGCTGTAGCAGAAAATGAATCTATTGGGAGGGAACGCTATAACTTTATGCAGAAAATGTTACTACCCTGCGGCCTTCCTCCAGAAAGAGAAGATGATTGA

Protein sequence

MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD
Homology
[Close]
BLAST of MELO3C007190.2 vs. NCBI nr
Match: XP_004134645.1 (PREDICTED: uncharacterized protein At4g14342 [Cucumis sativus] >XP_008439709.1 PREDICTED: uncharacterized protein At4g14342 isoform X1 [Cucumis melo] >ADN34023.1 splicing factor 3b subunit [Cucumis melo subsp. melo] >KGN49334.1 hypothetical protein Csa_6G520320 [Cucumis sativus])

HSP 1 Score: 186.8 bits (473), Expect = 3.1e-44
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 88
          ESIGRERYNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 87

[Close]
BLAST of MELO3C007190.2 vs. NCBI nr
Match: XP_015887858.1 (uncharacterized protein At4g14342 [Ziziphus jujuba] >XP_022947444.1 uncharacterized protein At4g14342 isoform X1 [Cucurbita moschata] >XP_022947450.1 uncharacterized protein At4g14342 isoform X2 [Cucurbita moschata] >XP_022925775.1 uncharacterized protein At4g14342 [Cucurbita moschata] >XP_022978791.1 uncharacterized protein At4g14342 [Cucurbita maxima] >XP_022974505.1 uncharacterized protein At4g14342 isoform X1 [Cucurbita maxima] >XP_022974506.1 uncharacterized protein At4g14342 isoform X2 [Cucurbita maxima] >XP_023521267.1 uncharacterized protein At4g14342 [Cucurbita pepo subsp. pepo] >XP_023539132.1 uncharacterized protein At4g14342 [Cucurbita pepo subsp. pepo] >XP_023543147.1 uncharacterized protein At4g14342 [Cucurbita pepo subsp. pepo] >XP_023919041.1 uncharacterized protein At4g14342 [Quercus suber] >XP_023919042.1 uncharacterized protein At4g14342 [Quercus suber] >OWM63373.1 hypothetical protein CDL15_Pgr022118 [Punica granatum] >PKI70636.1 hypothetical protein CRG98_008869 [Punica granatum] >POF02078.1 uncharacterized protein CFP56_65328 [Quercus suber])

HSP 1 Score: 186.4 bits (472), Expect = 4.1e-44
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFA+AEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 88
          ESIGRERYNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 87

[Close]
BLAST of MELO3C007190.2 vs. NCBI nr
Match: XP_021593515.1 (uncharacterized protein At4g14342 [Manihot esculenta] >XP_021640388.1 uncharacterized protein At4g14342 isoform X1 [Hevea brasiliensis] >XP_021640396.1 uncharacterized protein At4g14342 isoform X2 [Hevea brasiliensis])

HSP 1 Score: 186.0 bits (471), Expect = 5.3e-44
Identity = 85/87 (97.70%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASY+GHYPILAYFA+AEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPILAYFAIAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 88
          ESIGRERYNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 87

[Close]
BLAST of MELO3C007190.2 vs. NCBI nr
Match: XP_021731175.1 (uncharacterized protein At4g14342-like [Chenopodium quinoa] >XP_021847686.1 uncharacterized protein At4g14342 [Spinacia oleracea] >XP_021849921.1 uncharacterized protein At4g14342 isoform X1 [Spinacia oleracea] >XP_022720866.1 uncharacterized protein At4g14342-like isoform X2 [Durio zibethinus] >XP_022739158.1 uncharacterized protein At4g14342-like [Durio zibethinus] >KNA09743.1 hypothetical protein SOVF_150750 [Spinacia oleracea] >KNA12951.1 hypothetical protein SOVF_121520 [Spinacia oleracea])

HSP 1 Score: 185.7 bits (470), Expect = 6.9e-44
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYP+LAYFAVAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPMLAYFAVAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 88
          ESIGRERYNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 87

[Close]
BLAST of MELO3C007190.2 vs. NCBI nr
Match: XP_021747838.1 (uncharacterized protein At4g14342-like [Chenopodium quinoa])

HSP 1 Score: 185.7 bits (470), Expect = 6.9e-44
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYP+LAYFAVAEN
Sbjct: 10 MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPMLAYFAVAEN 69

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 88
          ESIGRERYNFMQKMLLPCGLPPEREDD
Sbjct: 70 ESIGRERYNFMQKMLLPCGLPPEREDD 96

[Close]
BLAST of MELO3C007190.2 vs. TAIR10
Match: AT3G23325.1 (Splicing factor 3B subunit 5/RDS3 complex subunit 10)

HSP 1 Score: 178.7 bits (452), Expect = 1.5e-45
Identity = 80/87 (91.95%), Postives = 86/87 (98.85%), Query Frame = 0 

Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADL+RFEW VNIQRDSYASY+GHYP+L+YFA+AEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWTVNIQRDSYASYIGHYPMLSYFAIAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 88
          ESIGRERYNFMQKMLLPCGLPPERED+
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDE 87

[Close]
BLAST of MELO3C007190.2 vs. TAIR10
Match: AT4G14342.1 (Splicing factor 3B subunit 5/RDS3 complex subunit 10)

HSP 1 Score: 178.7 bits (452), Expect = 1.5e-45
Identity = 80/87 (91.95%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADL+RFEWAVNIQRDSYASY+GHYP+L+YFA+AEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYIGHYPMLSYFAIAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 88
          ESIGRERYNFMQKMLLPCGLPPERE++
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREEE 87

[Close]
BLAST of MELO3C007190.2 vs. Swiss-Prot
Match: sp|Q9LW64|SF3BA_ARATH (Uncharacterized protein At3g23325 OS=Arabidopsis thaliana OX=3702 GN=At3g23325 PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 2.8e-44
Identity = 80/87 (91.95%), Postives = 86/87 (98.85%), Query Frame = 0 

Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADL+RFEW VNIQRDSYASY+GHYP+L+YFA+AEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWTVNIQRDSYASYIGHYPMLSYFAIAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 88
          ESIGRERYNFMQKMLLPCGLPPERED+
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDE 87

[Close]
BLAST of MELO3C007190.2 vs. Swiss-Prot
Match: sp|P58728|SF3BB_ARATH (Uncharacterized protein At4g14342 OS=Arabidopsis thaliana OX=3702 GN=At4g14342 PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 2.8e-44
Identity = 80/87 (91.95%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADL+RFEWAVNIQRDSYASY+GHYP+L+YFA+AEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYIGHYPMLSYFAIAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 88
          ESIGRERYNFMQKMLLPCGLPPERE++
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREEE 87

[Close]
BLAST of MELO3C007190.2 vs. Swiss-Prot
Match: sp|Q9VHI4|SF3B5_DROME (Splicing factor 3B subunit 5 OS=Drosophila melanogaster OX=7227 GN=Sf3b5 PE=1 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 2.8e-28
Identity = 54/83 (65.06%), Postives = 67/83 (80.72%), Query Frame = 0 

Query: 5  DRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIG 64
          +R+NI+SQLEHLQ+KY+GTGHAD  +FEW  N  RDS ASY+GHY IL YFA+AENES  
Sbjct: 3  ERYNIHSQLEHLQSKYIGTGHADTTKFEWLTNQHRDSLASYMGHYDILNYFAIAENESKA 62

Query: 65 RERYNFMQKMLLPCGLPPEREDD 88
          R R+N M++ML PCG PPE+ +D
Sbjct: 63 RVRFNLMERMLQPCGPPPEKLED 85

[Close]
BLAST of MELO3C007190.2 vs. Swiss-Prot
Match: sp|Q56K13|SF3B5_BOVIN (Splicing factor 3B subunit 5 OS=Bos taurus OX=9913 GN=SF3B5 PE=3 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.2e-26
Identity = 50/84 (59.52%), Postives = 67/84 (79.76%), Query Frame = 0 

Query: 4  SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESI 63
          +DR+ I+SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YFA+AENES 
Sbjct: 2  TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESK 61

Query: 64 GRERYNFMQKMLLPCGLPPEREDD 88
           R R+N M+KML PCG P ++ ++
Sbjct: 62 ARVRFNLMEKMLQPCGPPADKPEE 85

[Close]
BLAST of MELO3C007190.2 vs. Swiss-Prot
Match: sp|Q9BWJ5|SF3B5_HUMAN (Splicing factor 3B subunit 5 OS=Homo sapiens OX=9606 GN=SF3B5 PE=1 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.2e-26
Identity = 50/84 (59.52%), Postives = 67/84 (79.76%), Query Frame = 0 

Query: 4  SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESI 63
          +DR+ I+SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YFA+AENES 
Sbjct: 2  TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESK 61

Query: 64 GRERYNFMQKMLLPCGLPPEREDD 88
           R R+N M+KML PCG P ++ ++
Sbjct: 62 ARVRFNLMEKMLQPCGPPADKPEE 85

[Close]
BLAST of MELO3C007190.2 vs. TrEMBL
Match: tr|A0A1S3AZE4|A0A1S3AZE4_CUCME (Splicing factor subunit OS=Cucumis melo OX=3656 GN=LOC103484426 PE=3 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 2.1e-44
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 88
          ESIGRERYNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 87

[Close]
BLAST of MELO3C007190.2 vs. TrEMBL
Match: tr|E5GC24|E5GC24_CUCME (Splicing factor subunit OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 2.1e-44
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 88
          ESIGRERYNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 87

[Close]
BLAST of MELO3C007190.2 vs. TrEMBL
Match: tr|A0A0A0KKG4|A0A0A0KKG4_CUCSA (Splicing factor subunit OS=Cucumis sativus OX=3659 GN=Csa_6G520320 PE=3 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 2.1e-44
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 88
          ESIGRERYNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 87

[Close]
BLAST of MELO3C007190.2 vs. TrEMBL
Match: tr|A0A218VSR0|A0A218VSR0_PUNGR (Splicing factor subunit OS=Punica granatum OX=22663 GN=CDL15_Pgr022118 PE=3 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 2.7e-44
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFA+AEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 88
          ESIGRERYNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 87

[Close]
BLAST of MELO3C007190.2 vs. TrEMBL
Match: tr|A0A2P4LA12|A0A2P4LA12_QUESU (Splicing factor subunit OS=Quercus suber OX=58331 GN=CFP56_65328 PE=3 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 2.7e-44
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFA+AEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 88
          ESIGRERYNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 87

The following BLAST results are available for this feature:
BLAST of MELO3C007190.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004134645.13.1e-44100.00PREDICTED: uncharacterized protein At4g14342 [Cucumis sativus] >XP_008439709.1 P... [more]
XP_015887858.14.1e-4498.85uncharacterized protein At4g14342 [Ziziphus jujuba] >XP_022947444.1 uncharacteri... [more]
XP_021593515.15.3e-4497.70uncharacterized protein At4g14342 [Manihot esculenta] >XP_021640388.1 uncharacte... [more]
XP_021731175.16.9e-4498.85uncharacterized protein At4g14342-like [Chenopodium quinoa] >XP_021847686.1 unch... [more]
XP_021747838.16.9e-4498.85uncharacterized protein At4g14342-like [Chenopodium quinoa][more]
BLAST of MELO3C007190.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G23325.11.5e-4591.95Splicing factor 3B subunit 5/RDS3 complex subunit 10[more]
AT4G14342.11.5e-4591.95Splicing factor 3B subunit 5/RDS3 complex subunit 10[more]
BLAST of MELO3C007190.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9LW64|SF3BA_ARATH2.8e-4491.95Uncharacterized protein At3g23325 OS=Arabidopsis thaliana OX=3702 GN=At3g23325 P... [more]
sp|P58728|SF3BB_ARATH2.8e-4491.95Uncharacterized protein At4g14342 OS=Arabidopsis thaliana OX=3702 GN=At4g14342 P... [more]
sp|Q9VHI4|SF3B5_DROME2.8e-2865.06Splicing factor 3B subunit 5 OS=Drosophila melanogaster OX=7227 GN=Sf3b5 PE=1 SV... [more]
sp|Q56K13|SF3B5_BOVIN1.2e-2659.52Splicing factor 3B subunit 5 OS=Bos taurus OX=9913 GN=SF3B5 PE=3 SV=1[more]
sp|Q9BWJ5|SF3B5_HUMAN1.2e-2659.52Splicing factor 3B subunit 5 OS=Homo sapiens OX=9606 GN=SF3B5 PE=1 SV=1[more]
BLAST of MELO3C007190.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3AZE4|A0A1S3AZE4_CUCME2.1e-44100.00Splicing factor subunit OS=Cucumis melo OX=3656 GN=LOC103484426 PE=3 SV=1[more]
tr|E5GC24|E5GC24_CUCME2.1e-44100.00Splicing factor subunit OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1[more]
tr|A0A0A0KKG4|A0A0A0KKG4_CUCSA2.1e-44100.00Splicing factor subunit OS=Cucumis sativus OX=3659 GN=Csa_6G520320 PE=3 SV=1[more]
tr|A0A218VSR0|A0A218VSR0_PUNGR2.7e-4498.85Splicing factor subunit OS=Punica granatum OX=22663 GN=CDL15_Pgr022118 PE=3 SV=1[more]
tr|A0A2P4LA12|A0A2P4LA12_QUESU2.7e-4498.85Splicing factor subunit OS=Quercus suber OX=58331 GN=CFP56_65328 PE=3 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
Vocabulary: INTERPRO
TermDefinition
IPR017089Splicing_factor_3B_subunit_5
IPR009846SF3b5/RDS3-10
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C007190.2.1MELO3C007190.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009846Splicing factor 3B subunit 5/RDS3 complex subunit 10PFAMPF07189SF3b10coord: 5..82
e-value: 2.1E-37
score: 127.0
IPR009846Splicing factor 3B subunit 5/RDS3 complex subunit 10PANTHERPTHR20978FAMILY NOT NAMEDcoord: 4..86
IPR017089Splicing factor 3B, subunit 5PIRSFPIRSF037010SF3B5coord: 1..87
e-value: 8.5E-40
score: 132.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C007190.2Csa6G520320Cucumber (Chinese Long) v2cumedB486
MELO3C007190.2CSPI06G35650Wild cucumber (PI 183967)cpimedB496
MELO3C007190.2CmaCh03G013460Cucurbita maxima (Rimu)cmamedB704
MELO3C007190.2Cla009716Watermelon (97103) v1medwmB561
MELO3C007190.2ClCG01G024000Watermelon (Charleston Gray)medwcgB510
MELO3C007190.2Cla97C01G023920Watermelon (97103) v2medwmbB507
MELO3C007190.2Bhi07G000168Wax gourdmedwgoB676
MELO3C007190.2Carg15364Silver-seed gourdcarmedB0560
MELO3C007190.2CsaV3_6G051140Cucumber (Chinese Long) v3cucmedB508
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C007190.2Cucumber (Gy14) v2cgybmedB070
MELO3C007190.2Cucumber (Gy14) v2cgybmedB442
MELO3C007190.2Cucurbita maxima (Rimu)cmamedB233
MELO3C007190.2Cucumber (Gy14) v1cgymedB025
MELO3C007190.2Cucumber (Gy14) v1cgymedB376
MELO3C007190.2Cucurbita maxima (Rimu)cmamedB440
MELO3C007190.2Cucurbita maxima (Rimu)cmamedB897
MELO3C007190.2Cucurbita moschata (Rifu)cmomedB217
MELO3C007190.2Cucurbita moschata (Rifu)cmomedB429
MELO3C007190.2Cucurbita moschata (Rifu)cmomedB695
MELO3C007190.2Cucurbita moschata (Rifu)cmomedB886
MELO3C007190.2Cucurbita pepo (Zucchini)cpemedB052
MELO3C007190.2Cucurbita pepo (Zucchini)cpemedB081
MELO3C007190.2Cucurbita pepo (Zucchini)cpemedB540
MELO3C007190.2Cucurbita pepo (Zucchini)cpemedB572
MELO3C007190.2Wild cucumber (PI 183967)cpimedB074
MELO3C007190.2Cucumber (Chinese Long) v2cumedB075
MELO3C007190.2Melon (DHL92) v3.6.1medmedB074
MELO3C007190.2Bottle gourd (USVL1VR-Ls)lsimedB156
MELO3C007190.2Bottle gourd (USVL1VR-Ls)lsimedB239
MELO3C007190.2Watermelon (Charleston Gray)medwcgB518
MELO3C007190.2Watermelon (97103) v1medwmB549
MELO3C007190.2Silver-seed gourdcarmedB0157
MELO3C007190.2Silver-seed gourdcarmedB0809
MELO3C007190.2Silver-seed gourdcarmedB0943
MELO3C007190.2Cucumber (Chinese Long) v3cucmedB083
MELO3C007190.2Watermelon (97103) v2medwmbB522
MELO3C007190.2Watermelon (97103) v2medwmbB523
MELO3C007190.2Wax gourdmedwgoB636
MELO3C007190.2Wax gourdmedwgoB671