CmaCh03G013460 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh03G013460
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionSplicing factor 3b subunit
LocationCma_Chr03 : 8605869 .. 8612336 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGGTACCAACTACACTTGTAACCTCGTATTTATTGTCTATCATACTTCTTTATTCCGAATTTTACGTTGTGTTTCGATTTAGTTGGGCAGTAATTAGAGAGCCGGGCGACTGAGTCCAATTTGATTCTTTCGTTTCTATTTCCGCTGATTCAAGCCTAAGGAGATGATTTTATAATTTCACTTCCTGATCCTGTTCGTATTACTCAACCTTTTCGTTTTGTTCATCGGAGGCCTTCTCTGTTGCGATATTCCTGGATCCTTAATTTATGAGAGATAAGGAATTTTCTACTACTTTCTCACTGGGAATCACTCTCTCGAAGGAAAAAAGATCTACTTTTTTATTTGGGGGTTGCTTGTTTCTAGTTGCTATGCAGTTCGAGTTATATCTGTTAAGCACTGTCATAAGCCCTATTCTATTGTGGGTTGTTAGTTTATATTTGGGTGACCTATTCTCAAGGTCTTGCTAGTCTTGTTAGCTTATATTTAGATGACCTATTCTAGGCTTGTTAGTTTATATTTAGGTTTAGCAGAAGGCTATATAATGCCATTCTTTCTGCTATTGAAATCATTTAAGTTTTCTGTGCAAATTGTATGCCTTGAGTAAATTTAGTGTTGTGAGTACATTTGTTCCGCTTTCGGCGCACAACAAGTGGTATCAGAGCCTGGTTGTGGTATTTTGGGGTATTGTGAAAGCTTGGGCATCATCGACCATTAGACGTGCTCACAATCGTGGTTATTCTCTTGAAAATCAATTTTCAAGAATAGTGTTTTTGAGTTTCATCCAGATTAATTATTGCAAATGGCAGAACCATCACGACGTGGATCGAGAGTGTGGAGTTCCAATCTTGAAGTAGAGAAATTTGATGGAACCAATAATTTTGGTGTTTGGCGAGGCGAAGTTAGCGATTTGTTGGTCATGCAAGACCTCGATGTCTCTCTCCAAGAGGAAATGCCTGAAGACATGACAGAAGCAGAATGGACGAAATTAAATCGGCAAGCCTGTGGAATTATTCGATCCTGTCTTGGCAAGGATCAGAAATATCCATTTATGAAGGTTACCATGGCGAAAGAATTATGGGACAAGCTTGAAGCGAAATATATGAAGAAGAGTGTGGAAAATAAACTCTATTTGAAGAAGAAACTCTTCCGTTTTGATTACAAGGAAGGCATCTCAATGGCTGAGCATTTGGATGATTTTAACAAAATCATCACTGATTTGCTCAATCTTGATGTTAAGATTGATGACGAGGACAAGGCGTTGTTGTTATTAAACTCCTTGCCGGAATCCTACGAGTTTTTAGTAACGACCCTACTACATGGAATTACTGATATTGATTTTGAAGATGTTTCAAATGCCTTAATAAACAATGAGATGCGAAAGAAGGAAAAGGAGACGTATCAAAGCTCTAGCTCAAATGTTCTCACTGCTCATGGAAGGACTTCCAATTGGAAAAAGAACGAATGTGGAGAGTCTCGATTAAAGTCGAGAGGTAGATCTGATAATTGGAGAAAACTTGATAAAAATGAGTGTGCATATTGTCGACAGAAAGGCCATTGGAAAAAGGATTGTCCGATCTTAAAAGAGAAGGGGTCGAAGTCCAATGTGGTTAGAGATGACGACATTGATACGGATGATGCCTTGACAATCTCCCAATCAGTCAGCCAAACCAGTGAATGGATTCTTGATTCTGGGTGCTCCTATCATATGTGTCCCAACAAAGAGATGTTTTTGGACTTCAAGGAGTTCAATGGTGGAGTTGTCTATATGGGAAATGATAGTACTTGTAAGATAATGGGAATCGGCTCAGTACAAATCAAGATGTTTGATGGGGTTATACGAAAACTCAAAGATGTGAGGTATGTCCCTGACTTGAAGAAAAATTTGATTTCACTTGGCGTTTTGGATGCGAGTGGTTATCGCATCATTTTGGAAGGAGGGAATTTGAAAGTAGCTCGTGGAGCTTTGGTGGCAATTACAGGAACTAGAAGAGGTAGCATATACTACCTCAACGGAACCACAATAATTGGGCATGCTGCTGTGGCAAGTTCGAAAGAACAAGACATATCGAAATTATGGCACATGCGACTCGGGCATGCTGGTGAGAAGGCGCTTCAGACACTGGTGAACCAAGGAGTCCTTAAGGGTGCCACAACTGGAAGAATTGATTTCTGTGAACATTGTATATTTGGCAAACAAAAAAATGTGAAGTTTGGTACAGCTATACACCAAACAAAGGGCATTTTGGATTATGTTCACACTGATGTATGGGGTCCCACAAAGAATGTCTCATTGGGAGGAAAGAGGTGGTTCGTCACCTTTATTGATGACTACTCGAAGAGAGTTTGGATGTATCCCATGAGGCACAAAAACGAGGTTCTCCAAATCTTCCTAGAGTGGAAGAAAATGGTAGAGAATCAGACGGACAAGAAAATCAAAAGGCTGAGATCAGACAACGGGGGAGAATATACTTATGATCCATTCCTTAAAGTATGCCGAGATGAAGGGATCGTTCGACACTTCACTGTTCCTGGTAAGCCACAACAAAATGGAGTTGCTGAGAGAATGAACCAGACATTAATAGAGAAGGTTCGATGCATATTGTCTCAAGCAGGATTGAGTAAGGCATTTTGGGCTGAGGCTCTCAGTTATGCAGTTCACTTGGTGAATCGTTTACCTGTTTCTGGAAACGGTGGGAGAACTCCGCTTGAGGTATGGTCAGGTAGTCCTGTTAGTGATTATGATAAATTACATGTGTTTGGGTGTCCTGCTTATTATCATGTGACAGACTCAAAGCTGGATCCTAGAGCAAAAAAAGCCAAGTTTATGGGCTTTAGCAAAGGTGTGAAGGGCTATAGGTTATGGTGTCCAGAAACAAGTAAGATTGTTAATAGTCGAGATGTGACATTCGATGAGTCTGGAATGTTTTTGCAGAAAATTGAAAATAATGACGAGGCATTGAAGCAGGTGGAGAAGGTGGTGTTCTCTCCTGATGTGGTTGCTCCTACTGAAGAACCTATTGACCAGGTAAATAATAACTTTGATGTCTTAGAACAGAAAGAGCAAAGACTTGAGGAGCAAAGCCTTGTAAATGAAAGAGTGGAGGAACCTGAGTCAATCGCCAAGAATAGACCACGAAGGGTAATTCGAAAACCTGCAAGGTTTGATGATACGATAGCATATGCTTTCTCTTTGATTGATGGAGTTCCTAACAGTTACAAAGATGCTATTCAGAGCCCGGATAGCTTACACTGGCAAGAGGCTGTGAATCAGGAGATAGCATCATTGGAGATAAATCAAACTTGGGATTTGGTACAACTTCCAAAAGGTAAGAAGGAAATTGGTTGTAAATGGGTTTTTGCAAAAAAGGAAGACCCTTTTGGTATACGTTATAAGGCTCGACTTGTGGCTAAAGGCTACGCACAAAAGGAAGGTATTGATTACAATGAAATTTTCTCACCTGTGGTAAAACATTCTTCGATTCGAATTTTGTTGGCTTTGGTTGCTCAATTTAATCTTGAGCTTGCACAACTCGATGTAAAAACTGCTTTTTTGCATGGAGATTTGGAAGAAGAAATATATATGACGCAACCAGTTGGTTTCCGAGTAGTTGGACAGCAACATTTAGTATGCAGATTGAAGAAATCTTTGTATGGGCTGAAGCAATCCCCTCGCCAATGGTATAAAAGGTTTGATCATTTCATGGTAGAGCATATGTATACTNATAGTCAATTTGACCATTGTGTGTATTATCGATGTCTCGATGATGGATCGTTTATCTACTTGCTCTTATATGTTGATGATATGTTAATTGCTTCAAAGAGACAGGTGGAGATTGATAAACTCAAAGATGAGCTTTCTAAAACATTTGAAATGAAAGACTTAGGCAATGCGAAGAAAATACTTGGAATGGAGATAGAGCGAGATCGAAAAAAAGGTACAGTCTGGTTGACTCAGTCTCAATATCTACGCAAGGTATTGTCAAGATTTAGTTTGAATAATTCAACCAAACCTGTTAGTACTCCACTTGCTCCTCATTTCAAGCTTAGTGCTTCCATGTGTCCAAGTTCTGACGATGACAAAAGATATATGGAGAACATTCCTTATACAAATGCTGTTGGTGCGTTGATGTATGCTATGGTGTGTACTCGACCTGATCTTTCACACGCAGTAAGCATGGTGAGTCGTTATATGCATAATCCTGGTAAAGAGCATTGGCAGGCTGTAAAATGGATTCTTAGGTACATTCTTGGCACTATTGATGTTGGTATTAAGTTTCAAAAACAAGAAATGTTTAATCTTGACAATCGTGTAGCTGGTTTTGTGGATTCTGATTATGCTGGTGATTTGGATAAGCGACGATCCACCACGGGTTATTTATTTACTATGGCTGGTGGACCTGTTTGTTGGCGCTCAACATTGCAGTCTACTGTTGCATTGTCTACCACTGAAGCAGAGTATATGGCGGTAACGGAAGCTTTTAAAGAAGCTATTTGGATGCATGGTTTGATCAATGACTTGGGTATTTTGCAGGGACATATAGATGTATTTTGTGATAGCCAGAGCGCTATTTGCTTGTCAAAAAATCAAGTCCATCATGCTCGTACAAAACACATTGATGTCCGTTTTCACTTTATTCGAGAAATCATTAGCAAAGGGGATATTCGTTTACTAAAAATTGGAACTGCTGATAACCCTGCTGATATGTTGACAAAGGTGATCGCTCGTGAAAAGTTCTGCCATTGTTTGGATCTCATCAACGTCGGAAGGAAGGAGTAGTGTGTTGATGTGGGAGCAACCAAATTCACTATCAACTTGGAAATCTTATGACAAGGTGGAGATTGTTAAGCACTGTCATAAGCCCTATTCTATTGTGGGTTGTTAGTTTATATTTGGGTGACCTATTCTCAAGGTCTTGCTAGTCTTGTTAGCTTATATTTAGATGACCTATTCTAGGCTTGTTAGTTTATATTTAGGTTTAGCAGAAGGCTATATAATGCCATTCTTTCTGCTGTTGAAATCATTTAAGTTTTCTGTGCAAATTGTATGCCTTGAGTAAATTTAGTGTTGTGAGTACATTTGTTCCGCTTTCGGCGCACAACAATATCATTCTGCTGCAGCCTGCAAATGAGCTCTGCACGAAGCGAGTGACGATATTATGTTGAGTCTTGAATTACTATTGTGTTGGTTAGTGTAATATGTGGATGTCAAACCTCTTAATCAGTAATCCATCTTTGAAATTTGAGATTGATTGTGGATTCCTGTCACTGCTCGCTGGAGGTTGGTTTAGATGGACACGAGGCGCTAATGTTGGTTTTTGATTGGGATGCAGGCCAGTGATAGATTTAACATAAATTCCCAGCTTGAGCACCTTCAAGCGAAATATGTGGGAACTGGGCATGCGGACTTAAATAGATTGTTAGTTTTGTATTCCTTCTTGTGTGTTGATCTTATTATATTGCTTTGCATATTAGTTTTGATGTCTAAATTCAGATGTTGGTGTGTACAGTGAGTGGGCAGTAAACATTCAGCGAGATAGCTATGCATCTTATGTTGGACATTACCCCATTCTAGCATACTTCGCTATAGCCGAAAATGAATCTATTGGGAGGGAACGCTACAACTTCATGCAGGTCAATAACTTCTTCTTTCTTTATGATTATTACCCCTTTAACTTGCCTTCCTCCCATGAACATGAGAGTTTCAAGTCCTATTATATGATTTACGAGTAATTGCTCCATCCATGTATATGAATTGTTTGTTATCTTCACTTGAACCCCTCTGCGTGCTGTAATCTAAACTGGGTTTGTGCTGCTTTTGTGTTTCGAAATGTGGGGTTAAACCCATTATGTTTGTAACTAGCATTTCATTCTTAATGAGGGATAGCAAAACTTCATCATATATCCTCCTGGATATCATTTTGGACATAGTTAGATACCTAATGGGTTGTTTTTCTTCTTTTTCTTTTCCTCTTTGCAGAAAATGTTGTTACCCTGCGGCCTTCCTCCAGAAAGAGAAGATGATTGAGATTGTAATTATATAAGTAATTGAAGTTGTTAAGATTGCAAAAACGGTCAGTCATTGTAGGGTTGATGAATTTCTTGTTTATGAACCAACGATGGTAAGATTTTCTTGGATATTGAAATTTTCTGTATGATTTCAATATATGAGTCTTCTAATAGACTTCTAGATTTTAAAATGTGTCGGGAACGGACGAAGGCCAAACTCGAAAGCTCAGGTAAAGACGCTAGTGCTTTCGTTTTCTTGCCAACGTTGATCCTATTTGGCTTCTAGTACTTTCTATTCCTCTTTTCTATTCCTCTTAAATAAGGTAATAGCTGACTTCAGATTTTAAAATGTTCCCAATGGATTTTTTTAATTTTTTAAAAAATATTTAATAGTTTCTTAAGCTTTTCTCTGTGTTTGATATTTTGGTCTATTCCACAATTTTTATATTTTACCTACC

mRNA sequence

ATGCAGGCCAGTGATAGATTTAACATAAATTCCCAGCTTGAGCACCTTCAAGCGAAATATGTGGGAACTGGGCATGCGGACTTAAATAGATTTGAGTGGGCAGTAAACATTCAGCGAGATAGCTATGCATCTTATGTTGGACATTACCCCATTCTAGCATACTTCGCTATAGCCGAAAATGAATCTATTGGGAGGGAACGCTACAACTTCATGCAGAAAATGTTGTTACCCTGCGGCCTTCCTCCAGAAAGAGAAGATGATTGAGATTGTAATTATATAAGTAATTGAAGTTGTTAAGATTGCAAAAACGGTCAGTCATTGTAGGGTTGATGAATTTCTTGTTTATGAACCAACGATGGTAAGATTTTCTTGGATATTGAAATTTTCTGTATGATTTCAATATATGAGTCTTCTAATAGACTTCTAGATTTTAAAATGTGTCGGGAACGGACGAAGGCCAAACTCGAAAGCTCAGGTAAAGACGCTAGTGCTTTCGTTTTCTTGCCAACGTTGATCCTATTTGGCTTCTAGTACTTTCTATTCCTCTTTTCTATTCCTCTTAAATAAGGTAATAGCTGACTTCAGATTTTAAAATGTTCCCAATGGATTTTTTTAATTTTTTAAAAAATATTTAATAGTTTCTTAAGCTTTTCTCTGTGTTTGATATTTTGGTCTATTCCACAATTTTTATATTTTACCTACC

Coding sequence (CDS)

ATGCAGGCCAGTGATAGATTTAACATAAATTCCCAGCTTGAGCACCTTCAAGCGAAATATGTGGGAACTGGGCATGCGGACTTAAATAGATTTGAGTGGGCAGTAAACATTCAGCGAGATAGCTATGCATCTTATGTTGGACATTACCCCATTCTAGCATACTTCGCTATAGCCGAAAATGAATCTATTGGGAGGGAACGCTACAACTTCATGCAGAAAATGTTGTTACCCTGCGGCCTTCCTCCAGAAAGAGAAGATGATTGA

Protein sequence

MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQKMLLPCGLPPEREDD
Homology
[Close]
BLAST of CmaCh03G013460 vs. Swiss-Prot
Match: SF3BA_ARATH (Uncharacterized protein At3g23325 OS=Arabidopsis thaliana GN=At3g23325 PE=3 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 2.1e-44
Identity = 81/87 (93.10%), Postives = 86/87 (98.85%), Query Frame = 1 

Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADL+RFEW VNIQRDSYASY+GHYP+L+YFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWTVNIQRDSYASYIGHYPMLSYFAIAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 88
          ESIGRERYNFMQKMLLPCGLPPERED+
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDE 87

[Close]
BLAST of CmaCh03G013460 vs. Swiss-Prot
Match: SF3BB_ARATH (Uncharacterized protein At4g14342 OS=Arabidopsis thaliana GN=At4g14342 PE=3 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 2.1e-44
Identity = 81/87 (93.10%), Postives = 87/87 (100.00%), Query Frame = 1 

Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADL+RFEWAVNIQRDSYASY+GHYP+L+YFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYIGHYPMLSYFAIAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 88
          ESIGRERYNFMQKMLLPCGLPPERE++
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREEE 87

[Close]
BLAST of CmaCh03G013460 vs. Swiss-Prot
Match: SF3B5_DROME (Probable splicing factor 3B subunit 5 OS=Drosophila melanogaster GN=CG11985 PE=1 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.1e-28
Identity = 55/83 (66.27%), Postives = 67/83 (80.72%), Query Frame = 1 

Query: 5  DRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIG 64
          +R+NI+SQLEHLQ+KY+GTGHAD  +FEW  N  RDS ASY+GHY IL YFAIAENES  
Sbjct: 3  ERYNIHSQLEHLQSKYIGTGHADTTKFEWLTNQHRDSLASYMGHYDILNYFAIAENESKA 62

Query: 65 RERYNFMQKMLLPCGLPPEREDD 88
          R R+N M++ML PCG PPE+ +D
Sbjct: 63 RVRFNLMERMLQPCGPPPEKLED 85

[Close]
BLAST of CmaCh03G013460 vs. Swiss-Prot
Match: SF3B5_BOVIN (Splicing factor 3B subunit 5 OS=Bos taurus GN=SF3B5 PE=3 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 8.8e-27
Identity = 51/84 (60.71%), Postives = 67/84 (79.76%), Query Frame = 1 

Query: 4  SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESI 63
          +DR+ I+SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YFAIAENES 
Sbjct: 2  TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESK 61

Query: 64 GRERYNFMQKMLLPCGLPPEREDD 88
           R R+N M+KML PCG P ++ ++
Sbjct: 62 ARVRFNLMEKMLQPCGPPADKPEE 85

[Close]
BLAST of CmaCh03G013460 vs. Swiss-Prot
Match: SF3B5_HUMAN (Splicing factor 3B subunit 5 OS=Homo sapiens GN=SF3B5 PE=1 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 8.8e-27
Identity = 51/84 (60.71%), Postives = 67/84 (79.76%), Query Frame = 1 

Query: 4  SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESI 63
          +DR+ I+SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YFAIAENES 
Sbjct: 2  TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESK 61

Query: 64 GRERYNFMQKMLLPCGLPPEREDD 88
           R R+N M+KML PCG P ++ ++
Sbjct: 62 ARVRFNLMEKMLQPCGPPADKPEE 85

[Close]
BLAST of CmaCh03G013460 vs. TrEMBL
Match: A0A0A0KKG4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G520320 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 1.5e-44
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 1 

Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFA+AEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 88
          ESIGRERYNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 87

[Close]
BLAST of CmaCh03G013460 vs. TrEMBL
Match: E5GC24_CUCME (Splicing factor 3b subunit OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 1.5e-44
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 1 

Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFA+AEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 88
          ESIGRERYNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 87

[Close]
BLAST of CmaCh03G013460 vs. TrEMBL
Match: D7SZI2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0049g01230 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 1.9e-44
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 1 

Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYP+LAYFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPLLAYFAIAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 88
          ESIGRERYNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 87

[Close]
BLAST of CmaCh03G013460 vs. TrEMBL
Match: A0A0J8CSL9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g048890 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 2.5e-44
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 1 

Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYP+LAYFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPMLAYFAIAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 88
          ESIGRERYNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 87

[Close]
BLAST of CmaCh03G013460 vs. TrEMBL
Match: W9RPR7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_021455 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 2.5e-44
Identity = 85/87 (97.70%), Postives = 87/87 (100.00%), Query Frame = 1 

Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASY+GHYP+LAYFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPLLAYFAIAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 88
          ESIGRERYNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 87

[Close]
BLAST of CmaCh03G013460 vs. TAIR10
Match: AT3G23325.1 (AT3G23325.1 Splicing factor 3B subunit 5/RDS3 complex subunit 10)

HSP 1 Score: 179.1 bits (453), Expect = 1.2e-45
Identity = 81/87 (93.10%), Postives = 86/87 (98.85%), Query Frame = 1 

Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADL+RFEW VNIQRDSYASY+GHYP+L+YFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWTVNIQRDSYASYIGHYPMLSYFAIAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 88
          ESIGRERYNFMQKMLLPCGLPPERED+
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDE 87

[Close]
BLAST of CmaCh03G013460 vs. TAIR10
Match: AT4G14342.1 (AT4G14342.1 Splicing factor 3B subunit 5/RDS3 complex subunit 10)

HSP 1 Score: 179.1 bits (453), Expect = 1.2e-45
Identity = 81/87 (93.10%), Postives = 87/87 (100.00%), Query Frame = 1 

Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADL+RFEWAVNIQRDSYASY+GHYP+L+YFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYIGHYPMLSYFAIAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 88
          ESIGRERYNFMQKMLLPCGLPPERE++
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREEE 87

[Close]
BLAST of CmaCh03G013460 vs. NCBI nr
Match: gi|1009140820|ref|XP_015887858.1| (PREDICTED: uncharacterized protein At4g14342 [Ziziphus jujuba])

HSP 1 Score: 186.8 bits (473), Expect = 1.6e-44
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 1 

Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 88
          ESIGRERYNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 87

[Close]
BLAST of CmaCh03G013460 vs. NCBI nr
Match: gi|449433720|ref|XP_004134645.1| (PREDICTED: uncharacterized protein At4g14342 [Cucumis sativus])

HSP 1 Score: 186.4 bits (472), Expect = 2.1e-44
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 1 

Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFA+AEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 88
          ESIGRERYNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 87

[Close]
BLAST of CmaCh03G013460 vs. NCBI nr
Match: gi|296083670|emb|CBI23659.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 186.0 bits (471), Expect = 2.7e-44
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 1 

Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYP+LAYFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPLLAYFAIAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 88
          ESIGRERYNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 87

[Close]
BLAST of CmaCh03G013460 vs. NCBI nr
Match: gi|703130969|ref|XP_010104765.1| (hypothetical protein L484_021455 [Morus notabilis])

HSP 1 Score: 185.7 bits (470), Expect = 3.6e-44
Identity = 85/87 (97.70%), Postives = 87/87 (100.00%), Query Frame = 1 

Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASY+GHYP+LAYFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPLLAYFAIAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 88
          ESIGRERYNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 87

[Close]
BLAST of CmaCh03G013460 vs. NCBI nr
Match: gi|731320814|ref|XP_010671013.1| (PREDICTED: uncharacterized protein At4g14342 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 185.7 bits (470), Expect = 3.6e-44
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 1 

Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYP+LAYFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPMLAYFAIAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 88
          ESIGRERYNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 87

The following BLAST results are available for this feature:
BLAST of CmaCh03G013460 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SF3BA_ARATH2.1e-4493.10Uncharacterized protein At3g23325 OS=Arabidopsis thaliana GN=At3g23325 PE=3 SV=1[more]
SF3BB_ARATH2.1e-4493.10Uncharacterized protein At4g14342 OS=Arabidopsis thaliana GN=At4g14342 PE=3 SV=1[more]
SF3B5_DROME2.1e-2866.27Probable splicing factor 3B subunit 5 OS=Drosophila melanogaster GN=CG11985 PE=1... [more]
SF3B5_BOVIN8.8e-2760.71Splicing factor 3B subunit 5 OS=Bos taurus GN=SF3B5 PE=3 SV=1[more]
SF3B5_HUMAN8.8e-2760.71Splicing factor 3B subunit 5 OS=Homo sapiens GN=SF3B5 PE=1 SV=1[more]
BLAST of CmaCh03G013460 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KKG4_CUCSA1.5e-4498.85Uncharacterized protein OS=Cucumis sativus GN=Csa_6G520320 PE=4 SV=1[more]
E5GC24_CUCME1.5e-4498.85Splicing factor 3b subunit OS=Cucumis melo subsp. melo PE=4 SV=1[more]
D7SZI2_VITVI1.9e-4498.85Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0049g01230 PE=4 SV=... [more]
A0A0J8CSL9_BETVU2.5e-4498.85Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g048890 PE=4 S... [more]
W9RPR7_9ROSA2.5e-4497.70Uncharacterized protein OS=Morus notabilis GN=L484_021455 PE=4 SV=1[more]
BLAST of CmaCh03G013460 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G23325.11.2e-4593.10 Splicing factor 3B subunit 5/RDS3 complex subunit 10[more]
AT4G14342.11.2e-4593.10 Splicing factor 3B subunit 5/RDS3 complex subunit 10[more]
BLAST of CmaCh03G013460 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|1009140820|ref|XP_015887858.1|1.6e-44100.00PREDICTED: uncharacterized protein At4g14342 [Ziziphus jujuba][more]
gi|449433720|ref|XP_004134645.1|2.1e-4498.85PREDICTED: uncharacterized protein At4g14342 [Cucumis sativus][more]
gi|296083670|emb|CBI23659.3|2.7e-4498.85unnamed protein product [Vitis vinifera][more]
gi|703130969|ref|XP_010104765.1|3.6e-4497.70hypothetical protein L484_021455 [Morus notabilis][more]
gi|731320814|ref|XP_010671013.1|3.6e-4498.85PREDICTED: uncharacterized protein At4g14342 [Beta vulgaris subsp. vulgaris][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009846SF3b5/RDS3-10
IPR017089Splicing_factor_3B_subunit_5
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh03G013460.1CmaCh03G013460.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009846Splicing factor 3B subunit 5/RDS3 complex subunit 10PANTHERPTHR20978FAMILY NOT NAMEDcoord: 1..87
score: 6.7
IPR009846Splicing factor 3B subunit 5/RDS3 complex subunit 10PFAMPF07189SF3b10coord: 5..82
score: 1.7
IPR017089Splicing factor 3B, subunit 5PIRPIRSF037010SF3B5coord: 1..87
score: 8.7
NoneNo IPR availablePANTHERPTHR20978:SF0SPLICING FACTOR 3B SUBUNIT 5coord: 1..87
score: 6.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh03G013460Cla009716Watermelon (97103) v1cmawmB628
CmaCh03G013460Csa6G520320Cucumber (Chinese Long) v2cmacuB678
CmaCh03G013460MELO3C007190Melon (DHL92) v3.5.1cmameB618
CmaCh03G013460ClCG01G024000Watermelon (Charleston Gray)cmawcgB576
CmaCh03G013460CSPI06G35650Wild cucumber (PI 183967)cmacpiB686
CmaCh03G013460CmoCh03G013450Cucurbita moschata (Rifu)cmacmoB653
CmaCh03G013460Lsi01G002170Bottle gourd (USVL1VR-Ls)cmalsiB602
CmaCh03G013460Cp4.1LG10g05690Cucurbita pepo (Zucchini)cmacpeB656
CmaCh03G013460MELO3C007190.2Melon (DHL92) v3.6.1cmamedB704
CmaCh03G013460CsaV3_6G051140Cucumber (Chinese Long) v3cmacucB0807
CmaCh03G013460Bhi07G000168Wax gourdcmawgoB0810
CmaCh03G013460CsGy6G035130Cucumber (Gy14) v2cgybcmaB830
CmaCh03G013460Carg15364Silver-seed gourdcarcmaB0763
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh03G013460Cucumber (Chinese Long) v2cmacuB650
CmaCh03G013460Melon (DHL92) v3.5.1cmameB592
CmaCh03G013460Watermelon (Charleston Gray)cmawcgB583
CmaCh03G013460Watermelon (97103) v1cmawmB622
CmaCh03G013460Cucurbita pepo (Zucchini)cmacpeB653
CmaCh03G013460Cucurbita pepo (Zucchini)cmacpeB667
CmaCh03G013460Cucurbita pepo (Zucchini)cmacpeB675
CmaCh03G013460Bottle gourd (USVL1VR-Ls)cmalsiB606
CmaCh03G013460Cucumber (Gy14) v2cgybcmaB127
CmaCh03G013460Melon (DHL92) v3.6.1cmamedB677
CmaCh03G013460Silver-seed gourdcarcmaB0199
CmaCh03G013460Silver-seed gourdcarcmaB1111
CmaCh03G013460Silver-seed gourdcarcmaB1311
CmaCh03G013460Cucumber (Chinese Long) v3cmacucB0776
CmaCh03G013460Watermelon (97103) v2cmawmbB667
CmaCh03G013460Watermelon (97103) v2cmawmbB682
CmaCh03G013460Wax gourdcmawgoB0787
CmaCh03G013460Wax gourdcmawgoB0808
CmaCh03G013460Cucurbita maxima (Rimu)cmacmaB232
CmaCh03G013460Cucurbita maxima (Rimu)cmacmaB397
CmaCh03G013460Cucurbita maxima (Rimu)cmacmaB528
CmaCh03G013460Cucumber (Gy14) v1cgycmaB0045
CmaCh03G013460Cucumber (Gy14) v1cgycmaB0618
CmaCh03G013460Cucurbita moschata (Rifu)cmacmoB638
CmaCh03G013460Cucurbita moschata (Rifu)cmacmoB644
CmaCh03G013460Cucurbita moschata (Rifu)cmacmoB672
CmaCh03G013460Wild cucumber (PI 183967)cmacpiB655