MELO3C007129 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C007129
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	VQ motif protein
Location	chr8 : 1011763 .. 1012071 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAACCCTAAGAAGACGGCGGAAGTGAGGGTGGTGCTAATTGAGTACCACCACATTCAAACCGACGCTTCCAACTTCAAGTCCGTCGTTCAAAGTCTCACCGGAAAGCATTCCTCCACAGCAGAGGACGGAGGTGAAATCTGCAGGAAGAGGCAGAGAGTGGTGGCTCGGAATAATAATGAGAGTATAATTAATATTAATCAAAGTGTTAAGATGATCCATACCGCGTCGTTTAAGGACTTGGATCGCTTGCTCTCCCTTGAACTTCCTTCCATGGAAGATCTTGACTGGATTCTCACTGATTAA

mRNA sequence

ATGGGAAACCCTAAGAAGACGGCGGAAGTGAGGGTGGTGCTAATTGAGTACCACCACATTCAAACCGACGCTTCCAACTTCAAGTCCGTCGTTCAAAGTCTCACCGGAAAGCATTCCTCCACAGCAGAGGACGGAGGTGAAATCTGCAGGAAGAGGCAGAGAGTGGTGGCTCGGAATAATAATGAGAGTATAATTAATATTAATCAAAGTGTTAAGATGATCCATACCGCGTCGTTTAAGGACTTGGATCGCTTGCTCTCCCTTGAACTTCCTTCCATGGAAGATCTTGACTGGATTCTCACTGATTAA

Coding sequence (CDS)

ATGGGAAACCCTAAGAAGACGGCGGAAGTGAGGGTGGTGCTAATTGAGTACCACCACATTCAAACCGACGCTTCCAACTTCAAGTCCGTCGTTCAAAGTCTCACCGGAAAGCATTCCTCCACAGCAGAGGACGGAGGTGAAATCTGCAGGAAGAGGCAGAGAGTGGTGGCTCGGAATAATAATGAGAGTATAATTAATATTAATCAAAGTGTTAAGATGATCCATACCGCGTCGTTTAAGGACTTGGATCGCTTGCTCTCCCTTGAACTTCCTTCCATGGAAGATCTTGACTGGATTCTCACTGATTAA

Protein sequence

MGNPKKTAEVRVVLIEYHHIQTDASNFKSVVQSLTGKHSSTAEDGGEICRKRQRVVARNNNESIININQSVKMIHTASFKDLDRLLSLELPSMEDLDWILTD*

Homology

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BLAST of MELO3C007129 vs. TrEMBL
Match: A0A0A0KNW8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G523420 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 1.8e-41
Identity = 92/104 (88.46%), Postives = 96/104 (92.31%), Query Frame = 1


Query: 1   MGNPKKTAEVRVVLIEYHHIQTDASNFKSVVQSLTGKHSSTAE-DGGEICRKRQRVVARN 60
           MGN KKTAEVRVVLIEYHHIQTDASNFKSVVQSLTGKHS  AE DGGEICRKRQRVV++N
Sbjct: 21  MGNSKKTAEVRVVLIEYHHIQTDASNFKSVVQSLTGKHSPAAEDDGGEICRKRQRVVSQN 80

Query: 61  NN-ESIININQSVKMIHTASFKDLDRLLSLELPSMEDLDWILTD 103
           NN ESI NINQ VKMIHT SFKDLDRLL+LELPSMEDL+WILTD
Sbjct: 81  NNHESITNINQRVKMIHTKSFKDLDRLLALELPSMEDLNWILTD 124

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BLAST of MELO3C007129 vs. TrEMBL
Match: A0A022QEX5_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a019453mg PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.2e-07
Identity = 40/104 (38.46%), Postives = 60/104 (57.69%), Query Frame = 1


Query: 2   GNPKKTAEVRVVLIEYHHIQTDASNFKSVVQSLTGKHSSTAEDGGEICRKRQRVVARNNN 61
           G  K+   V+VV+I   +++TDA +FKSVVQSLTGK S+ A   G    ++ ++ +R++ 
Sbjct: 5   GMMKRELPVKVVIINTQYVETDAVSFKSVVQSLTGKDSTVAA-AGAASPEKSKLKSRSSG 64

Query: 62  ESIININQSVKMIHTA---------SFKDLDRLLSLELPSMEDL 97
            S  N N +      A         SFKD DR+L  ELPS+++L
Sbjct: 65  ASAFNYNSNSNSNSNAIERVVERGVSFKDFDRMLK-ELPSLDEL 106

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BLAST of MELO3C007129 vs. TrEMBL
Match: A5ANL5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_036998 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-06
Identity = 38/97 (39.18%), Postives = 58/97 (59.79%), Query Frame = 1


Query: 5   KKTAEVRVVLIEYHHIQTDASNFKSVVQSLTGKHSSTA--EDGGEICRKRQRVVARNNNE 64
           K    V+VV+I   +I+T+  +FKSVVQSLTGK S  A  E+     RKR+R V +++ +
Sbjct: 4   KNRKPVKVVIIGTQYIETNPLSFKSVVQSLTGKDSCVAWVEESSYKSRKRRRTVDKSSGD 63

Query: 65  SIININQSVKMIHTASFKDLDRLLSLELPSMEDLDWI 100
           +      + ++ +  SF D D L+ LELP  E+L W+
Sbjct: 64  A------AAELSNCRSFNDWDXLM-LELPPAEELSWV 93

[Close]

BLAST of MELO3C007129 vs. TrEMBL
Match: A0A151R659_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_040796 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 5.4e-06
Identity = 39/89 (43.82%), Postives = 52/89 (58.43%), Query Frame = 1


Query: 11 RVVLIEYHHIQTDASNFKSVVQSLTGKHSSTAEDGGEICRKRQRVVAR---NNNESIINI 70
          R+V IE  +++TDA NF+ VVQ LTGK+SST    G        V A+   +N +   N 
Sbjct: 6  RIVHIETRYVETDAINFRDVVQRLTGKNSSTTNSVG--IASYDGVGAKPHEDNTDGQKNC 65

Query: 71 NQSVKMIHTASFKDLDRLLSLELPSMEDL 97
            S  ++   SFKD DRLLS +LP ME+L
Sbjct: 66 VTSSMLLMNVSFKDFDRLLS-DLPPMEEL 91

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BLAST of MELO3C007129 vs. NCBI nr
Match: gi|778722586|ref|XP_011658524.1| (PREDICTED: uncharacterized protein LOC105436045 [Cucumis sativus])

HSP 1 Score: 176.4 bits (446), Expect = 2.6e-41
Identity = 92/104 (88.46%), Postives = 96/104 (92.31%), Query Frame = 1


Query: 1   MGNPKKTAEVRVVLIEYHHIQTDASNFKSVVQSLTGKHSSTAE-DGGEICRKRQRVVARN 60
           MGN KKTAEVRVVLIEYHHIQTDASNFKSVVQSLTGKHS  AE DGGEICRKRQRVV++N
Sbjct: 1   MGNSKKTAEVRVVLIEYHHIQTDASNFKSVVQSLTGKHSPAAEDDGGEICRKRQRVVSQN 60

Query: 61  NN-ESIININQSVKMIHTASFKDLDRLLSLELPSMEDLDWILTD 103
           NN ESI NINQ VKMIHT SFKDLDRLL+LELPSMEDL+WILTD
Sbjct: 61  NNHESITNINQRVKMIHTKSFKDLDRLLALELPSMEDLNWILTD 104

[Close]

BLAST of MELO3C007129 vs. NCBI nr
Match: gi|700194197|gb|KGN49401.1| (hypothetical protein Csa_6G523420 [Cucumis sativus])

HSP 1 Score: 176.4 bits (446), Expect = 2.6e-41
Identity = 92/104 (88.46%), Postives = 96/104 (92.31%), Query Frame = 1


Query: 1   MGNPKKTAEVRVVLIEYHHIQTDASNFKSVVQSLTGKHSSTAE-DGGEICRKRQRVVARN 60
           MGN KKTAEVRVVLIEYHHIQTDASNFKSVVQSLTGKHS  AE DGGEICRKRQRVV++N
Sbjct: 21  MGNSKKTAEVRVVLIEYHHIQTDASNFKSVVQSLTGKHSPAAEDDGGEICRKRQRVVSQN 80

Query: 61  NN-ESIININQSVKMIHTASFKDLDRLLSLELPSMEDLDWILTD 103
           NN ESI NINQ VKMIHT SFKDLDRLL+LELPSMEDL+WILTD
Sbjct: 81  NNHESITNINQRVKMIHTKSFKDLDRLLALELPSMEDLNWILTD 124

[Close]

BLAST of MELO3C007129 vs. NCBI nr
Match: gi|848898840|ref|XP_012849551.1| (PREDICTED: VQ motif-containing protein 10-like [Erythranthe guttata])

HSP 1 Score: 63.2 bits (152), Expect = 3.2e-07
Identity = 40/104 (38.46%), Postives = 60/104 (57.69%), Query Frame = 1


Query: 2   GNPKKTAEVRVVLIEYHHIQTDASNFKSVVQSLTGKHSSTAEDGGEICRKRQRVVARNNN 61
           G  K+   V+VV+I   +++TDA +FKSVVQSLTGK S+ A   G    ++ ++ +R++ 
Sbjct: 5   GMMKRELPVKVVIINTQYVETDAVSFKSVVQSLTGKDSTVAA-AGAASPEKSKLKSRSSG 64

Query: 62  ESIININQSVKMIHTA---------SFKDLDRLLSLELPSMEDL 97
            S  N N +      A         SFKD DR+L  ELPS+++L
Sbjct: 65  ASAFNYNSNSNSNSNAIERVVERGVSFKDFDRMLK-ELPSLDEL 106

[Close]

BLAST of MELO3C007129 vs. NCBI nr
Match: gi|147854996|emb|CAN80257.1| (hypothetical protein VITISV_036998 [Vitis vinifera])

HSP 1 Score: 60.8 bits (146), Expect = 1.6e-06
Identity = 38/97 (39.18%), Postives = 58/97 (59.79%), Query Frame = 1


Query: 5   KKTAEVRVVLIEYHHIQTDASNFKSVVQSLTGKHSSTA--EDGGEICRKRQRVVARNNNE 64
           K    V+VV+I   +I+T+  +FKSVVQSLTGK S  A  E+     RKR+R V +++ +
Sbjct: 4   KNRKPVKVVIIGTQYIETNPLSFKSVVQSLTGKDSCVAWVEESSYKSRKRRRTVDKSSGD 63

Query: 65  SIININQSVKMIHTASFKDLDRLLSLELPSMEDLDWI 100
           +      + ++ +  SF D D L+ LELP  E+L W+
Sbjct: 64  A------AAELSNCRSFNDWDXLM-LELPPAEELSWV 93

[Close]

BLAST of MELO3C007129 vs. NCBI nr
Match: gi|1009174884|ref|XP_015868579.1| (PREDICTED: VQ motif-containing protein 10-like [Ziziphus jujuba])

HSP 1 Score: 60.5 bits (145), Expect = 2.0e-06
Identity = 44/103 (42.72%), Postives = 57/103 (55.34%), Query Frame = 1


Query: 10  VRVVLIEYHHIQTDASNFKSVVQSLTGKHSSTA----EDGGEICRKRQRVVARNNNESII 69
           V+VVLI+  +IQTD  +FKSVVQSLTGK S  A            KR+R  A +    I+
Sbjct: 9   VKVVLIDTQYIQTDPMSFKSVVQSLTGKDSCVAWINKRSFTGDAAKRKRSAAVHQISDIV 68

Query: 70  NINQSVK----------MIHTASFKDLDRLLSLELPSMEDLDW 99
           N   S +          +    SFKDLDR++ LE+PSMEDL +
Sbjct: 69  NGGVSDRGSDHGNNISLLSKGMSFKDLDRMM-LEIPSMEDLQY 110

The following BLAST results are available for this feature:

BLAST of MELO3C007129 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KNW8_CUCSA	1.8e-41	88.46	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G523420 PE=4 SV=1	[more]
A0A022QEX5_ERYGU	2.2e-07	38.46	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a019453mg PE=4 SV=1	[more]
A5ANL5_VITVI	1.1e-06	39.18	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_036998 PE=4 SV=1	[more]
A0A151R659_CAJCA	5.4e-06	43.82	Uncharacterized protein OS=Cajanus cajan GN=KK1_040796 PE=4 SV=1	[more]

BLAST of MELO3C007129 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778722586\|ref\|XP_011658524.1\|	2.6e-41	88.46	PREDICTED: uncharacterized protein LOC105436045 [Cucumis sativus]	[more]
gi\|700194197\|gb\|KGN49401.1\|	2.6e-41	88.46	hypothetical protein Csa_6G523420 [Cucumis sativus]	[more]
gi\|848898840\|ref\|XP_012849551.1\|	3.2e-07	38.46	PREDICTED: VQ motif-containing protein 10-like [Erythranthe guttata]	[more]
gi\|147854996\|emb\|CAN80257.1\|	1.6e-06	39.18	hypothetical protein VITISV_036998 [Vitis vinifera]	[more]
gi\|1009174884\|ref\|XP_015868579.1\|	2.0e-06	42.72	PREDICTED: VQ motif-containing protein 10-like [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008889	VQ

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C007129T1	MELO3C007129T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 20..39 score: 3.
None	No IPR available	PANTHER	PTHR34777	FAMILY NOT NAMED	coord: 10..96 score: 1.4
None	No IPR available	PANTHER	PTHR34777:SF1	VQ MOTIF-CONTAINING PROTEIN	coord: 10..96 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C007129	Csa6G523420	Cucumber (Chinese Long) v2	cumeB507
MELO3C007129	Cla009777	Watermelon (97103) v1	mewmB572
MELO3C007129	ClCG01G024660	Watermelon (Charleston Gray)	mewcgB515
MELO3C007129	Cla97C01G024610	Watermelon (97103) v2	mewmbB515
MELO3C007129	Bhi03G000079	Wax gourd	mewgoB650
MELO3C007129	CSPI06G36320	Wild cucumber (PI 183967)	cpimeB512
MELO3C007129	CmaCh03G014020	Cucurbita maxima (Rimu)	cmameB618
MELO3C007129	CmaCh07G001030	Cucurbita maxima (Rimu)	cmameB798
MELO3C007129	CmoCh07G001040	Cucurbita moschata (Rifu)	cmomeB782
MELO3C007129	Lsi01G001420	Bottle gourd (USVL1VR-Ls)	lsimeB149
MELO3C007129	Cp4.1LG10g06030	Cucurbita pepo (Zucchini)	cpemeB061
MELO3C007129	Cp4.1LG19g06070	Cucurbita pepo (Zucchini)	cpemeB457
MELO3C007129	Carg15004	Silver-seed gourd	carmeB0725
MELO3C007129	Carg19272	Silver-seed gourd	carmeB0301
MELO3C007129	CsaV3_6G051770	Cucumber (Chinese Long) v3	cucmeB520

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C007129	Cucumber (Gy14) v2	cgybmeB075
MELO3C007129	Cucumber (Gy14) v2	cgybmeB445
MELO3C007129	Silver-seed gourd	carmeB0431
MELO3C007129	Silver-seed gourd	carmeB0797
MELO3C007129	Cucumber (Chinese Long) v3	cucmeB089
MELO3C007129	Watermelon (97103) v2	mewmbB530
MELO3C007129	Wax gourd	mewgoB665
MELO3C007129	Melon (DHL92) v3.5.1	memeB075
MELO3C007129	Cucumber (Gy14) v1	cgymeB027
MELO3C007129	Cucurbita maxima (Rimu)	cmameB211
MELO3C007129	Cucurbita maxima (Rimu)	cmameB381
MELO3C007129	Cucurbita moschata (Rifu)	cmomeB195
MELO3C007129	Cucurbita moschata (Rifu)	cmomeB373
MELO3C007129	Cucurbita moschata (Rifu)	cmomeB606
MELO3C007129	Wild cucumber (PI 183967)	cpimeB083
MELO3C007129	Cucumber (Chinese Long) v2	cumeB080
MELO3C007129	Watermelon (Charleston Gray)	mewcgB523
MELO3C007129	Watermelon (97103) v1	mewmB562
MELO3C007129	Cucurbita pepo (Zucchini)	cpemeB044
MELO3C007129	Cucurbita pepo (Zucchini)	cpemeB485
MELO3C007129	Bottle gourd (USVL1VR-Ls)	lsimeB228