Carg15004 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg15004
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Vq motif-containing protein 1
Location	Cucurbita_argyrosperma_scaffold_071 : 582840 .. 583163 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAACTCCAAGGCGGCGGGTCCAGTGAAGGTGGTGTTTATTGAGTACCACCATATTCAGACCGACGTCACAAATTTCAAGTCCGTCGTTCAGACCCTCACCGGCATGAATTCCACCGCCGGTGGAAACACCAGGAAGAAGCGGCGAGTGGATGAGAATATTATTGATGCAAGATCAGCCCGGTTTGAAGAAAGTACTGAAAGTTGTGAGACCGATACGACGTCGTCTCTGCAGAGCACGTCGTATGAGGACTTGGATCCCTTGCTGCTCAAGCTCGAGCTTCCTTCCATGGAGGATCTCAACTGGATTTGGGCTGATTAA

mRNA sequence

ATGGCAAACTCCAAGGCGGCGGGTCCAGTGAAGGTGGTGTTTATTGAGTACCACCATATTCAGACCGACGTCACAAATTTCAAGTCCGTCGTTCAGACCCTCACCGGCATGAATTCCACCGCCGGTGGAAACACCAGGAAGAAGCGGCGAGTGGATGAGAATATTATTGATGCAAGATCAGCCCGGTTTGAAGAAAGTACTGAAAGTTGTGAGACCGATACGACGTCGTCTCTGCAGAGCACGTCGTATGAGGACTTGGATCCCTTGCTGCTCAAGCTCGAGCTTCCTTCCATGGAGGATCTCAACTGGATTTGGGCTGATTAA

Coding sequence (CDS)

ATGGCAAACTCCAAGGCGGCGGGTCCAGTGAAGGTGGTGTTTATTGAGTACCACCATATTCAGACCGACGTCACAAATTTCAAGTCCGTCGTTCAGACCCTCACCGGCATGAATTCCACCGCCGGTGGAAACACCAGGAAGAAGCGGCGAGTGGATGAGAATATTATTGATGCAAGATCAGCCCGGTTTGAAGAAAGTACTGAAAGTTGTGAGACCGATACGACGTCGTCTCTGCAGAGCACGTCGTATGAGGACTTGGATCCCTTGCTGCTCAAGCTCGAGCTTCCTTCCATGGAGGATCTCAACTGGATTTGGGCTGATTAA

Protein sequence

MANSKAAGPVKVVFIEYHHIQTDVTNFKSVVQTLTGMNSTAGGNTRKKRRVDENIIDARSARFEESTESCETDTTSSLQSTSYEDLDPLLLKLELPSMEDLNWIWAD

Homology

[Close]

BLAST of Carg15004 vs. NCBI nr
Match: XP_022926399.1 (VQ motif-containing protein 10-like [Cucurbita moschata])

HSP 1 Score: 208.8 bits (530), Expect = 9.4e-51
Identity = 106/107 (99.07%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MANSKAAGPVKVVFIEYHHIQTDVTNFKSVVQTLTGMNSTAGGNTRKKRRVDENIIDARS 60
           MANSKAAGPVKVVFIEYHHIQTDVTNFKSVVQTLTGMNSTAGGNTRKKRRVDENIIDARS
Sbjct: 1   MANSKAAGPVKVVFIEYHHIQTDVTNFKSVVQTLTGMNSTAGGNTRKKRRVDENIIDARS 60

Query: 61  ARFEESTESCETDTTSSLQSTSYEDLDPLLLKLELPSMEDLNWIWAD 108
           ARFEESTESCETDTTSSLQSTS+EDLDPLLLKLELPSMEDLNWIWAD
Sbjct: 61  ARFEESTESCETDTTSSLQSTSFEDLDPLLLKLELPSMEDLNWIWAD 107

[Close]

BLAST of Carg15004 vs. NCBI nr
Match: XP_023003955.1 (VQ motif-containing protein 10 [Cucurbita maxima])

HSP 1 Score: 199.1 bits (505), Expect = 7.4e-48
Identity = 101/107 (94.39%), Postives = 104/107 (97.20%), Query Frame = 0


Query: 1   MANSKAAGPVKVVFIEYHHIQTDVTNFKSVVQTLTGMNSTAGGNTRKKRRVDENIIDARS 60
           MANSKAAGPVKVVFIEYHHIQTDV+NFKSVVQTLTGMNSTAGGNTRKK RVDENIID RS
Sbjct: 1   MANSKAAGPVKVVFIEYHHIQTDVSNFKSVVQTLTGMNSTAGGNTRKKPRVDENIIDVRS 60

Query: 61  ARFEESTESCETDTTSSLQSTSYEDLDPLLLKLELPSMEDLNWIWAD 108
           ARFEEST SCETDTTSS+QSTS+EDLDPLLLKLELPSMEDLNWIWAD
Sbjct: 61  ARFEESTVSCETDTTSSVQSTSFEDLDPLLLKLELPSMEDLNWIWAD 107

[Close]

BLAST of Carg15004 vs. NCBI nr
Match: XP_023518171.1 (VQ motif-containing protein 10-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 198.7 bits (504), Expect = 9.7e-48
Identity = 101/107 (94.39%), Postives = 103/107 (96.26%), Query Frame = 0


Query: 1   MANSKAAGPVKVVFIEYHHIQTDVTNFKSVVQTLTGMNSTAGGNTRKKRRVDENIIDARS 60
           MANSKAAGPVKVVFIEYHHIQTDV+NFKSVVQTLTGMNS AGGNTRKKRRVDENIID RS
Sbjct: 1   MANSKAAGPVKVVFIEYHHIQTDVSNFKSVVQTLTGMNSPAGGNTRKKRRVDENIIDVRS 60

Query: 61  ARFEESTESCETDTTSSLQSTSYEDLDPLLLKLELPSMEDLNWIWAD 108
            RFEESTESCETDTTSS QSTS+EDLDPLLLKLELPSMEDLNWIWAD
Sbjct: 61  DRFEESTESCETDTTSSQQSTSFEDLDPLLLKLELPSMEDLNWIWAD 107

[Close]

BLAST of Carg15004 vs. NCBI nr
Match: XP_022146499.1 (uncharacterized protein LOC111015700 [Momordica charantia])

HSP 1 Score: 84.3 bits (207), Expect = 2.7e-13
Identity = 53/111 (47.75%), Postives = 71/111 (63.96%), Query Frame = 0


Query: 7   AGPVKVVFIEYHHIQTDVTNFKSVVQTLTGM----------NSTAGGNTRKKRRVDENII 66
           + PVKVV IEYHH+QTDV+NFKSVVQ+LTG            S   G+T K+RR D   +
Sbjct: 4   SAPVKVVLIEYHHVQTDVSNFKSVVQSLTGNAKRSSSALPDTSFPAGDTTKRRRRD---L 63

Query: 67  DARSARFEESTESCETDTTSSLQSTSYEDLDPLLLKLELPSMEDLNWIWAD 108
           D+ +A  +   ++  T T   L + S++DLD  LLK  LPS++DL+WIWAD
Sbjct: 64  DSAAAN-QTIIQTTATTTPFDLHTMSFKDLD-RLLKFNLPSVQDLDWIWAD 109

[Close]

BLAST of Carg15004 vs. NCBI nr
Match: KGN49401.1 (hypothetical protein Csa_6G523420 [Cucumis sativus])

HSP 1 Score: 79.7 bits (195), Expect = 6.6e-12
Identity = 53/111 (47.75%), Postives = 67/111 (60.36%), Query Frame = 0


Query: 1   MANSKAAGPVKVVFIEYHHIQTDVTNFKSVVQTLTGMNSTA----GGNTRKKRRVDENII 60
           M NSK    V+VV IEYHHIQTD +NFKSVVQ+LTG +S A    GG   +KR+     +
Sbjct: 21  MGNSKKTAEVRVVLIEYHHIQTDASNFKSVVQSLTGKHSPAAEDDGGEICRKRQ----RV 80

Query: 61  DARSARFEESTESCETDTTSSLQSTSYEDLDPLLLKLELPSMEDLNWIWAD 108
            +++   E  T          + + S++DLD  LL LELPSMEDLNWI  D
Sbjct: 81  VSQNNNHESITNI--NQRVKMIHTKSFKDLD-RLLALELPSMEDLNWILTD 124

[Close]

BLAST of Carg15004 vs. TrEMBL
Match: tr|A0A0A0KNW8|A0A0A0KNW8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G523420 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 4.3e-12
Identity = 53/111 (47.75%), Postives = 67/111 (60.36%), Query Frame = 0


Query: 1   MANSKAAGPVKVVFIEYHHIQTDVTNFKSVVQTLTGMNSTA----GGNTRKKRRVDENII 60
           M NSK    V+VV IEYHHIQTD +NFKSVVQ+LTG +S A    GG   +KR+     +
Sbjct: 21  MGNSKKTAEVRVVLIEYHHIQTDASNFKSVVQSLTGKHSPAAEDDGGEICRKRQ----RV 80

Query: 61  DARSARFEESTESCETDTTSSLQSTSYEDLDPLLLKLELPSMEDLNWIWAD 108
            +++   E  T          + + S++DLD  LL LELPSMEDLNWI  D
Sbjct: 81  VSQNNNHESITNI--NQRVKMIHTKSFKDLD-RLLALELPSMEDLNWILTD 124

[Close]

BLAST of Carg15004 vs. TrEMBL
Match: tr|A0A2P4LGL2|A0A2P4LGL2_QUESU (Vq motif-containing protein 1 OS=Quercus suber OX=58331 GN=CFP56_38598 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 4.4e-04
Identity = 41/107 (38.32%), Postives = 57/107 (53.27%), Query Frame = 0


Query: 10  VKVVFIEYHHIQTDVTNFKSVVQTLTGMNST---------AGGNTRKKRRVDENIIDARS 69
           VKVV I   +++TD T+FKSVVQ+LTG +S          A G  ++   V+  I   RS
Sbjct: 9   VKVVLINTQYVETDTTSFKSVVQSLTGKDSCVEWIEKSSYAAGKRKRPLAVNGGI--ERS 68

Query: 70  ARF-EESTESCETDTTSSLQSTSYEDLDPLLLKLELPSMEDLNWIWA 107
             F      S  T      +  S++DLD L+  LELP ME+ +W+WA
Sbjct: 69  GHFGNGGCGSSSTAVPMLSKGMSFKDLDSLM--LELPPMEESHWLWA 111

The following BLAST results are available for this feature:

BLAST of Carg15004 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022926399.1	9.4e-51	99.07	VQ motif-containing protein 10-like [Cucurbita moschata]	[more]
XP_023003955.1	7.4e-48	94.39	VQ motif-containing protein 10 [Cucurbita maxima]	[more]
XP_023518171.1	9.7e-48	94.39	VQ motif-containing protein 10-like [Cucurbita pepo subsp. pepo]	[more]
XP_022146499.1	2.7e-13	47.75	uncharacterized protein LOC111015700 [Momordica charantia]	[more]
KGN49401.1	6.6e-12	47.75	hypothetical protein Csa_6G523420 [Cucumis sativus]	[more]

BLAST of Carg15004 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg15004 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg15004 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KNW8\|A0A0A0KNW8_CUCSA	4.3e-12	47.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G523420 PE=4 SV=1	[more]
tr\|A0A2P4LGL2\|A0A2P4LGL2_QUESU	4.4e-04	38.32	Vq motif-containing protein 1 OS=Quercus suber OX=58331 GN=CFP56_38598 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008889	VQ

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg15004-RA	Carg15004-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 20..40 e-value: 3.0E-7 score: 29.7
None	No IPR available	PANTHER	PTHR34777	FAMILY NOT NAMED	coord: 2..101
None	No IPR available	PANTHER	PTHR34777:SF1	VQ MOTIF-CONTAINING PROTEIN 1-RELATED	coord: 2..101

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg15004	Cla009777	Watermelon (97103) v1	carwmB0730
Carg15004	Csa6G523420	Cucumber (Chinese Long) v2	carcuB0748
Carg15004	MELO3C007129	Melon (DHL92) v3.5.1	carmeB0725
Carg15004	ClCG01G024660	Watermelon (Charleston Gray)	carwcgB0707
Carg15004	CSPI06G36320	Wild cucumber (PI 183967)	carcpiB0764
Carg15004	CmaCh07G001030	Cucurbita maxima (Rimu)	carcmaB1024
Carg15004	CmaCh03G014020	Cucurbita maxima (Rimu)	carcmaB1023
Carg15004	CmoCh07G001040	Cucurbita moschata (Rifu)	carcmoB0996
Carg15004	Lsi01G001420	Bottle gourd (USVL1VR-Ls)	carlsiB669
Carg15004	Cp4.1LG10g06030	Cucurbita pepo (Zucchini)	carcpeB1028
Carg15004	Cp4.1LG19g06070	Cucurbita pepo (Zucchini)	carcpeB1029
Carg15004	CsGy6G035680	Cucumber (Gy14) v2	carcgybB0726
Carg15004	MELO3C007129.2	Melon (DHL92) v3.6.1	carmedB0736
Carg15004	CsaV3_6G051770	Cucumber (Chinese Long) v3	carcucB0767
Carg15004	Cla97C01G024610	Watermelon (97103) v2	carwmbB0764
Carg15004	Bhi03G000079	Wax gourd	carwgoB0863

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg15004	Carg19272	Silver-seed gourd	carcarB328

The following block(s) are covering this gene:


Gene	Organism	Block
Carg15004	Watermelon (97103) v2	carwmbB0765
Carg15004	Wax gourd	carwgoB0864
Carg15004	Silver-seed gourd	carcarB437
Carg15004	Cucumber (Gy14) v1	carcgyB0822
Carg15004	Cucurbita maxima (Rimu)	carcmaB1021
Carg15004	Cucurbita maxima (Rimu)	carcmaB1022
Carg15004	Cucurbita moschata (Rifu)	carcmoB0993
Carg15004	Cucurbita moschata (Rifu)	carcmoB0994
Carg15004	Cucurbita moschata (Rifu)	carcmoB0995
Carg15004	Cucurbita pepo (Zucchini)	carcpeB1027
Carg15004	Cucurbita pepo (Zucchini)	carcpeB1030
Carg15004	Bottle gourd (USVL1VR-Ls)	carlsiB670
Carg15004	Melon (DHL92) v3.5.1	carmeB0724
Carg15004	Watermelon (Charleston Gray)	carwcgB0708
Carg15004	Watermelon (97103) v1	carwmB0729