MELO3C006724 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C006724
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionWRKY transcription factor, putative
Locationchr6 : 5399749 .. 5400159 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAAGAAATTTGAAGAGGAATCAATGATGGGGTTTGATGATTCCGCCGGGCTTTACTCTCCGGCGGTGTTTTCCGATGACTTTCCGTCTTCTAATTTTGATTCTTTTTCCAGTATTTTCGACATGCCATGTGATGCCCATAAAGCTTCTAATTTTGATTTTTATTATTACAATAATAGTAGTAATAATAACAGTGATAATCCTTCTTCTTTCTTCGATTTGCTTTCTACGGCGGCTCCCCCACTTTCTTCACCGGCCTCCACCGTGCCGGAATCTTCCGAGGTTGTTAATGCTCCAACCACTCCTAATTCTTCCTCTGTTTCTTCTTCATCCAATGAAGCTGCCGCCATTGAAGAAGTCAACAACAGTACTACTACTCATGACAAGCCTTCTTCTTCTAAAGTGTAA

mRNA sequence

ATGGAAAAGAAATTTGAAGAGGAATCAATGATGGGGTTTGATGATTCCGCCGGGCTTTACTCTCCGGCGGTGTTTTCCGATGACTTTCCGTCTTCTAATTTTGATTCTTTTTCCAGTATTTTCGACATGCCATGTGATGCCCATAAAGCTTCTAATTTTGATTTTTATTATTACAATAATAGTAGTAATAATAACAGTGATAATCCTTCTTCTTTCTTCGATTTGCTTTCTACGGCGGCTCCCCCACTTTCTTCACCGGCCTCCACCGTGCCGGAATCTTCCGAGGTTGTTAATGCTCCAACCACTCCTAATTCTTCCTCTGTTTCTTCTTCATCCAATGAAGCTGCCGCCATTGAAGAAGTCAACAACAGTACTACTACTCATGACAAGCCTTCTTCTTCTAAAGTGTAA

Coding sequence (CDS)

ATGGAAAAGAAATTTGAAGAGGAATCAATGATGGGGTTTGATGATTCCGCCGGGCTTTACTCTCCGGCGGTGTTTTCCGATGACTTTCCGTCTTCTAATTTTGATTCTTTTTCCAGTATTTTCGACATGCCATGTGATGCCCATAAAGCTTCTAATTTTGATTTTTATTATTACAATAATAGTAGTAATAATAACAGTGATAATCCTTCTTCTTTCTTCGATTTGCTTTCTACGGCGGCTCCCCCACTTTCTTCACCGGCCTCCACCGTGCCGGAATCTTCCGAGGTTGTTAATGCTCCAACCACTCCTAATTCTTCCTCTGTTTCTTCTTCATCCAATGAAGCTGCCGCCATTGAAGAAGTCAACAACAGTACTACTACTCATGACAAGCCTTCTTCTTCTAAAGTGTAA

Protein sequence

MEKKFEEESMMGFDDSAGLYSPAVFSDDFPSSNFDSFSSIFDMPCDAHKASNFDFYYYNNSSNNNSDNPSSFFDLLSTAAPPLSSPASTVPESSEVVNAPTTPNSSSVSSSSNEAAAIEEVNNSTTTHDKPSSSKV*
Homology
[Close]
BLAST of MELO3C006724 vs. Swiss-Prot
Match: WRK48_ARATH (Probable WRKY transcription factor 48 OS=Arabidopsis thaliana GN=WRKY48 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 9.3e-07
Identity = 42/117 (35.90%), Postives = 57/117 (48.72%), Query Frame = 1 

Query: 15  DSAGLYSPAVFSDDFPSSNFDSFSSIFDMPCDAHKASNFDFYYYNNSSNNNSDNPSSFFD 74
           D++ L  P  + +D  S+N +SF  +         +SN   + ++     N++N +SFF 
Sbjct: 72  DTSSLPFPYSYFEDHSSNNPNSFLDLLRQDHQFASSSNSSSFSFDAFPLPNNNNNTSFFT 131

Query: 75  LLSTAAPPLSSPASTVPESSEVVNA-PTTPNSSSVSSSSNEAAAIEEVNNSTTTHDK 131
            L     PL        ESSEVVN  PT+PNS+SVSSSSNEAA         T  D+
Sbjct: 132 DL-----PLPQA-----ESSEVVNTTPTSPNSTSVSSSSNEAANDNNSGKEVTVKDQ 178

[Close]
BLAST of MELO3C006724 vs. TrEMBL
Match: A0A0A0L834_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G168410 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 1.2e-66
Identity = 127/136 (93.38%), Postives = 134/136 (98.53%), Query Frame = 1 

Query: 1   MEKKFEEESMMGFDDSAGLYSPAVFSDDFPSSNFDSFSSIFDMPCDAHKASNFDFYYYNN 60
           MEKKFEEES MGFDDSAG YSPAVFSDDFPSSNFDSFSSIFDMPCDAHKASNFDFYYYNN
Sbjct: 1   MEKKFEEESRMGFDDSAGFYSPAVFSDDFPSSNFDSFSSIFDMPCDAHKASNFDFYYYNN 60

Query: 61  SSNNNSDNPSSFFDLLSTAAPPLSSPASTVPESSEVVNAPTTPNSSSVSSSSNEAAAIEE 120
           +++N+++NPSSFFDLLSTAAPPLSSPASTVPESSEVVNAPTTPNSSSVSSSSNEAAAIEE
Sbjct: 61  NNSNSNNNPSSFFDLLSTAAPPLSSPASTVPESSEVVNAPTTPNSSSVSSSSNEAAAIEE 120

Query: 121 VNNSTTTHDKPSSSKV 137
           VNNSTTTHDKPS+SKV
Sbjct: 121 VNNSTTTHDKPSASKV 136

[Close]
BLAST of MELO3C006724 vs. TrEMBL
Match: S5CFS2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=WRKY23 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.4e-12
Identity = 56/130 (43.08%), Postives = 70/130 (53.85%), Query Frame = 1 

Query: 10  MMGFDDSAGLYSPAVFSDDFPSSNFDSFSSIFD-MPCDAHKASNFDFYYYNNSSNNNSDN 69
           MM  +  +   S A+ S   P ++  + SSIFD MPCD     +  F    +  + N D 
Sbjct: 23  MMSEEMPSSSNSLALSSTVIPITSSTTTSSIFDIMPCDIGDKESLSFM---DLLDRNQDF 82

Query: 70  PSSFFDLLSTA---APPLSSPASTVPESSEVVNAPTTPNSSSVSSSSNEAAAIEEVNNST 129
             S FD        + PL SPASTVPESSEV+NAP TPNSSS+SSSSNEA     VNN  
Sbjct: 83  GPSLFDWFPAPIVPSQPLPSPASTVPESSEVLNAPATPNSSSISSSSNEA-----VNNDA 142

Query: 130 TTHDKPSSSK 136
             + KP   +
Sbjct: 143 PANKKPGEEE 144

[Close]
BLAST of MELO3C006724 vs. TrEMBL
Match: D7SYJ2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0077g00730 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 7.4e-11
Identity = 53/97 (54.64%), Postives = 59/97 (60.82%), Query Frame = 1 

Query: 23  AVFSDDFPSSNFDSFSSIFDMPCDAHKASNFDFYYYNNSSNNNSDNPSSFFDLLST--AA 82
           + FSD  P+S   S SSIFDMPC+  K S   F           D   S FDLL    A 
Sbjct: 16  STFSDQIPASCAFS-SSIFDMPCEVEKGS-LGFM----DLLGIQDYSPSLFDLLQPPLAP 75

Query: 83  PPLSSPASTV-PESSEVVNAPTTPNSSSVSSSSNEAA 117
            PL+SPAS+  PESSEVVNAP TPNSSS+SSSS EAA
Sbjct: 76  HPLTSPASSAPPESSEVVNAPATPNSSSISSSSTEAA 106

[Close]
BLAST of MELO3C006724 vs. TrEMBL
Match: V4RXW7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005203mg PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.8e-10
Identity = 53/146 (36.30%), Postives = 74/146 (50.68%), Query Frame = 1 

Query: 14  DDSAGLYSPAVFSDDFPSSNFDSFSSIFDMPCDAHK--ASNFDFY-----YYNNSSNNNS 73
           + S  + +  + SD+ P+  +     IFDM C+  K  A++F F        +N++ NN 
Sbjct: 7   ETSISMANSTLLSDENPAGGY-GLGGIFDMSCEGDKWDAASFGFMDLLNVQNHNTNYNNQ 66

Query: 74  DNPSSFFDLLSTAAPPLSSPA----------STVPESSEVVNAPTTPNSSSVSSSSNEAA 133
           D     F   +T  PP  + A          S  PESSEV+N P TPNSSS+SSSSNEAA
Sbjct: 67  DFGGDSFLFSNTLHPPPPAAAPILPPPPPQPSPAPESSEVLNNPATPNSSSISSSSNEAA 126

Query: 134 AIE-------EVNNSTTTHDKPSSSK 136
           A         + NN+   ++K SSSK
Sbjct: 127 ANNTNNEEQTDTNNNNNNNNKNSSSK 151

[Close]
BLAST of MELO3C006724 vs. TrEMBL
Match: B9RZT1_RICCO (WRKY transcription factor, putative OS=Ricinus communis GN=RCOM_1000990 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.4e-09
Identity = 44/93 (47.31%), Postives = 51/93 (54.84%), Query Frame = 1 

Query: 38  SSIFDM--PCDAHKASNFDFYYYNNSSNNNSD--NPSSFFDLLSTAAP-----------P 97
           +SIFDM  PCD      +   + +    NN D    SS FD      P           P
Sbjct: 45  TSIFDMMMPCDYMGEKGYSLGFLDLLDGNNQDFGATSSLFDWFQFQTPILPDHHQQQQQP 104

Query: 98  LSSPASTVPESSEVVNAPTTPNSSSVSSSSNEA 116
           L SPASTVPE+SEV+N P TPNSSS+SSSSNEA
Sbjct: 105 LPSPASTVPETSEVLNTPATPNSSSISSSSNEA 137

[Close]
BLAST of MELO3C006724 vs. TAIR10
Match: AT5G49520.1 (AT5G49520.1 WRKY DNA-binding protein 48)

HSP 1 Score: 54.7 bits (130), Expect = 5.3e-08
Identity = 42/117 (35.90%), Postives = 57/117 (48.72%), Query Frame = 1 

Query: 15  DSAGLYSPAVFSDDFPSSNFDSFSSIFDMPCDAHKASNFDFYYYNNSSNNNSDNPSSFFD 74
           D++ L  P  + +D  S+N +SF  +         +SN   + ++     N++N +SFF 
Sbjct: 72  DTSSLPFPYSYFEDHSSNNPNSFLDLLRQDHQFASSSNSSSFSFDAFPLPNNNNNTSFFT 131

Query: 75  LLSTAAPPLSSPASTVPESSEVVNA-PTTPNSSSVSSSSNEAAAIEEVNNSTTTHDK 131
            L     PL        ESSEVVN  PT+PNS+SVSSSSNEAA         T  D+
Sbjct: 132 DL-----PLPQA-----ESSEVVNTTPTSPNSTSVSSSSNEAANDNNSGKEVTVKDQ 178

[Close]
BLAST of MELO3C006724 vs. NCBI nr
Match: gi|659077791|ref|XP_008439387.1| (PREDICTED: probable WRKY transcription factor 48 [Cucumis melo])

HSP 1 Score: 274.6 bits (701), Expect = 9.2e-71
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1 

Query: 1   MEKKFEEESMMGFDDSAGLYSPAVFSDDFPSSNFDSFSSIFDMPCDAHKASNFDFYYYNN 60
           MEKKFEEESMMGFDDSAGLYSPAVFSDDFPSSNFDSFSSIFDMPCDAHKASNFDFYYYNN
Sbjct: 1   MEKKFEEESMMGFDDSAGLYSPAVFSDDFPSSNFDSFSSIFDMPCDAHKASNFDFYYYNN 60

Query: 61  SSNNNSDNPSSFFDLLSTAAPPLSSPASTVPESSEVVNAPTTPNSSSVSSSSNEAAAIEE 120
           SSNNNSDNPSSFFDLLSTAAPPLSSPASTVPESSEVVNAPTTPNSSSVSSSSNEAAAIEE
Sbjct: 61  SSNNNSDNPSSFFDLLSTAAPPLSSPASTVPESSEVVNAPTTPNSSSVSSSSNEAAAIEE 120

Query: 121 VNNSTTTHDKPSSSKV 137
           VNNSTTTHDKPSSSKV
Sbjct: 121 VNNSTTTHDKPSSSKV 136

[Close]
BLAST of MELO3C006724 vs. NCBI nr
Match: gi|778679105|ref|XP_011651087.1| (PREDICTED: probable WRKY transcription factor 48 [Cucumis sativus])

HSP 1 Score: 260.4 bits (664), Expect = 1.8e-66
Identity = 127/136 (93.38%), Postives = 134/136 (98.53%), Query Frame = 1 

Query: 1   MEKKFEEESMMGFDDSAGLYSPAVFSDDFPSSNFDSFSSIFDMPCDAHKASNFDFYYYNN 60
           MEKKFEEES MGFDDSAG YSPAVFSDDFPSSNFDSFSSIFDMPCDAHKASNFDFYYYNN
Sbjct: 1   MEKKFEEESRMGFDDSAGFYSPAVFSDDFPSSNFDSFSSIFDMPCDAHKASNFDFYYYNN 60

Query: 61  SSNNNSDNPSSFFDLLSTAAPPLSSPASTVPESSEVVNAPTTPNSSSVSSSSNEAAAIEE 120
           +++N+++NPSSFFDLLSTAAPPLSSPASTVPESSEVVNAPTTPNSSSVSSSSNEAAAIEE
Sbjct: 61  NNSNSNNNPSSFFDLLSTAAPPLSSPASTVPESSEVVNAPTTPNSSSVSSSSNEAAAIEE 120

Query: 121 VNNSTTTHDKPSSSKV 137
           VNNSTTTHDKPS+SKV
Sbjct: 121 VNNSTTTHDKPSASKV 136

[Close]
BLAST of MELO3C006724 vs. NCBI nr
Match: gi|1000966271|ref|XP_002519250.2| (PREDICTED: probable WRKY transcription factor 48 [Ricinus communis])

HSP 1 Score: 72.4 bits (176), Expect = 6.9e-10
Identity = 54/146 (36.99%), Postives = 70/146 (47.95%), Query Frame = 1 

Query: 1   MEKKFEEESMMGFDDSAGLYSP------AVFSDDFPSSNFD----------SFSSIFDM- 60
           MEK  EE+ M+   +S+   +       +   ++ PS N            + +SIFDM 
Sbjct: 1   MEKVREEKKMIKIGNSSAAVAANSTTFISELQEEMPSINVSLPLSSAASSITTTSIFDMM 60

Query: 61  -PCDAHKASNFDFYYYNNSSNNNSD--NPSSFFDLLSTAAP-----------PLSSPAST 116
            PCD      +   + +    NN D    SS FD      P           PL SPAST
Sbjct: 61  MPCDYMGEKGYSLGFLDLLDGNNQDFGATSSLFDWFQFQTPILPDHHQQQQQPLPSPAST 120

[Close]
BLAST of MELO3C006724 vs. NCBI nr
Match: gi|1003003090|gb|AMO00415.1| (WRKY transcription factor 47 [Manihot esculenta])

HSP 1 Score: 68.9 bits (167), Expect = 7.6e-09
Identity = 49/119 (41.18%), Postives = 63/119 (52.94%), Query Frame = 1 

Query: 1   MEKKFEEESMMGFDDSAGLYSPAVFSDDFP-SSNFDSFSSIFDM-PCDAHKASNFDFYYY 60
           MEK+ E+        +   +     S  F  SS   + +SIFDM PCD    ++      
Sbjct: 1   MEKRAEQMIKTEISMANSTFITEELSTSFALSSTTPTSASIFDMMPCDIGDKASLGIM-- 60

Query: 61  NNSSNNNSDNPSSFFDLLSTAA---PPLSSPASTVPESSEVVNAPTTPNSSSVSSSSNE 115
            +  ++N D  +S FD          PL SPASTVPESSEV+N P TPNSSS+SSSSNE
Sbjct: 61  -DLLDSNQDFGTSLFDWFQPPIVPHQPLPSPASTVPESSEVLNTPATPNSSSISSSSNE 116

[Close]
BLAST of MELO3C006724 vs. NCBI nr
Match: gi|410111032|gb|AEO31516.2| (WRKY transcription factor 31 [Dimocarpus longan])

HSP 1 Score: 58.9 bits (141), Expect = 7.9e-06
Identity = 31/53 (58.49%), Postives = 37/53 (69.81%), Query Frame = 1 

Query: 78  TAAPPLSSPASTVPESSEVVNAPTTPNSSSVSSSSNEAAAIEEVNNSTTTHDK 131
           T    L SPAST PESSEV+N P TPNSSS+SSSSNEAA    ++   + +DK
Sbjct: 115 TTTTALRSPASTFPESSEVLNNPATPNSSSISSSSNEAA--NNIDQEQSNNDK 165

The following BLAST results are available for this feature:
BLAST of MELO3C006724 vs. Swiss-Prot
Match NameE-valueIdentityDescription
WRK48_ARATH9.3e-0735.90Probable WRKY transcription factor 48 OS=Arabidopsis thaliana GN=WRKY48 PE=2 SV=... [more]
BLAST of MELO3C006724 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L834_CUCSA1.2e-6693.38Uncharacterized protein OS=Cucumis sativus GN=Csa_3G168410 PE=4 SV=1[more]
S5CFS2_JATCU1.4e-1243.08Uncharacterized protein OS=Jatropha curcas GN=WRKY23 PE=4 SV=1[more]
D7SYJ2_VITVI7.4e-1154.64Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0077g00730 PE=4 SV=... [more]
V4RXW7_9ROSI2.8e-1036.30Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005203mg PE=4 SV=1[more]
B9RZT1_RICCO2.4e-0947.31WRKY transcription factor, putative OS=Ricinus communis GN=RCOM_1000990 PE=4 SV=... [more]
BLAST of MELO3C006724 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G49520.15.3e-0835.90 WRKY DNA-binding protein 48[more]
BLAST of MELO3C006724 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659077791|ref|XP_008439387.1|9.2e-71100.00PREDICTED: probable WRKY transcription factor 48 [Cucumis melo][more]
gi|778679105|ref|XP_011651087.1|1.8e-6693.38PREDICTED: probable WRKY transcription factor 48 [Cucumis sativus][more]
gi|1000966271|ref|XP_002519250.2|6.9e-1036.99PREDICTED: probable WRKY transcription factor 48 [Ricinus communis][more]
gi|1003003090|gb|AMO00415.1|7.6e-0941.18WRKY transcription factor 47 [Manihot esculenta][more]
gi|410111032|gb|AEO31516.2|7.9e-0658.49WRKY transcription factor 31 [Dimocarpus longan][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C006724T1MELO3C006724T1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C006724Carg19612Silver-seed gourdcarmeB0280
MELO3C006724Carg25644Silver-seed gourdcarmeB0736
MELO3C006724CsaV3_3G015290Cucumber (Chinese Long) v3cucmeB236
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C006724Cucurbita pepo (Zucchini)cpemeB140
MELO3C006724Cucurbita pepo (Zucchini)cpemeB314
MELO3C006724Cucurbita pepo (Zucchini)cpemeB585
MELO3C006724Cucurbita pepo (Zucchini)cpemeB813
MELO3C006724Bottle gourd (USVL1VR-Ls)lsimeB029
MELO3C006724Bottle gourd (USVL1VR-Ls)lsimeB379
MELO3C006724Cucumber (Gy14) v2cgybmeB200
MELO3C006724Silver-seed gourdcarmeB0074
MELO3C006724Silver-seed gourdcarmeB0701
MELO3C006724Watermelon (97103) v2mewmbB434
MELO3C006724Watermelon (97103) v2mewmbB448
MELO3C006724Wax gourdmewgoB519
MELO3C006724Wax gourdmewgoB529
MELO3C006724Melon (DHL92) v3.5.1memeB051
MELO3C006724Cucumber (Gy14) v1cgymeB439
MELO3C006724Cucurbita maxima (Rimu)cmameB242
MELO3C006724Cucurbita maxima (Rimu)cmameB342
MELO3C006724Cucurbita maxima (Rimu)cmameB763
MELO3C006724Cucurbita maxima (Rimu)cmameB850
MELO3C006724Cucurbita moschata (Rifu)cmomeB230
MELO3C006724Cucurbita moschata (Rifu)cmomeB335
MELO3C006724Cucurbita moschata (Rifu)cmomeB832
MELO3C006724Cucurbita moschata (Rifu)cmomeB755
MELO3C006724Wild cucumber (PI 183967)cpimeB230
MELO3C006724Cucumber (Chinese Long) v2cumeB236
MELO3C006724Watermelon (Charleston Gray)mewcgB427
MELO3C006724Watermelon (Charleston Gray)mewcgB442
MELO3C006724Watermelon (97103) v1mewmB486
MELO3C006724Watermelon (97103) v1mewmB461