MELO3C006672 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C006672
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionPollen Ole e 1 allergen and extensin family protein, putative
Locationchr6 : 4950267 .. 4951063 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTTGAGATCGAAAATGTTTGTTATGGTGATGGTTATTGGTGCTTTGGGATCTGCTCCATTGATGGTGGAATCTCAGCTGTTGGTTAACCCTCTTGTCACGATCAATGGATCTCTTACTGGCATTCCCGGTGGCAGCCTTGTAGGCATCCCTGTCTCAAGTAATAATAATTAACCCAGTTTCCATATAATCAATTTCTACATTTTTTTTCTTTTCTTAGAGTTTTTTTAGCATGGCGTTCTCTTTCGTTAAACAAATATACCAATCCTTATAGTCGATTTTCAAACACTGTTGTCGTTGTACTCCGTGAAGGCATGAACACAGGTTATGAGGTTAAAAATATAAATATTTTGAACGTTTTCCTCGTGATTTTTACACACAACAGATGCAACAGTGGAATTGGATTGCAACGGGACTGTTTTGTCAACTACAACAACGAACAGCATGGGATCCTTTCTCCTGTCATCGTCATTGAATAATCCTACCCAAATCAATGGTCTCTTGAATGGTTGTGCCGCTGTCGTTAGCACGCCGTTGTCAGTCTTCAACCCGATAGATCTTGAATCTTTTGGAACTTTCAGGTTCAGTACGAACATAAGGATAGTGGATAATGGTGATGACTAACTGAACCAGGTTCCTGCCATTTCCAGTAACGTGGGCTAAATATATATTTACAAAAGAGGATGATGGAGAATATCAATTATAGTATTTTACTACTTTCGTCTGATAAAATTGTACCTTGACTTATCTCTCTAAGTAATTTAATATCTAATAATATAACTACTTTTAGTTTA

mRNA sequence

ATGGGTTTGAGATCGAAAATGTTTGTTATGGTGATGGTTATTGGTGCTTTGGGATCTGCTCCATTGATGGTGGAATCTCAGCTGTTGGTTAACCCTCTTGTCACGATCAATGGATCTCTTACTGGCATTCCCGGTGGCAGCCTTGTAGGCATCCCTGTCTCAAATGCAACAGTGGAATTGGATTGCAACGGGACTGTTTTGTCAACTACAACAACGAACAGCATGGGATCCTTTCTCCTGTCATCGTCATTGAATAATCCTACCCAAATCAATGGTCTCTTGAATGGTTGTGCCGCTGTCGTTAGCACGCCGTTGTCAGTCTTCAACCCGATAGATCTTGAATCTTTTGGAACTTTCAGGTTCAGTACGAACATAAGGATAGTGGATAATGGTGATGACTAACTGAACCAGGTTCCTGCCATTTCCAGTAACGTGGGCTAAATATATATTTACAAAAGAGGATGATGGAGAATATCAATTATAGTATTTTACTACTTTCGTCTGATAAAATTGTACCTTGACTTATCTCTCTAAGTAATTTAATATCTAATAATATAACTACTTTTAGTTTA

Coding sequence (CDS)

ATGGGTTTGAGATCGAAAATGTTTGTTATGGTGATGGTTATTGGTGCTTTGGGATCTGCTCCATTGATGGTGGAATCTCAGCTGTTGGTTAACCCTCTTGTCACGATCAATGGATCTCTTACTGGCATTCCCGGTGGCAGCCTTGTAGGCATCCCTGTCTCAAATGCAACAGTGGAATTGGATTGCAACGGGACTGTTTTGTCAACTACAACAACGAACAGCATGGGATCCTTTCTCCTGTCATCGTCATTGAATAATCCTACCCAAATCAATGGTCTCTTGAATGGTTGTGCCGCTGTCGTTAGCACGCCGTTGTCAGTCTTCAACCCGATAGATCTTGAATCTTTTGGAACTTTCAGGTTCAGTACGAACATAAGGATAGTGGATAATGGTGATGACTAA

Protein sequence

MGLRSKMFVMVMVIGALGSAPLMVESQLLVNPLVTINGSLTGIPGGSLVGIPVSNATVELDCNGTVLSTTTTNSMGSFLLSSSLNNPTQINGLLNGCAAVVSTPLSVFNPIDLESFGTFRFSTNIRIVDNGDD*
Homology
[Close]
BLAST of MELO3C006672 vs. TrEMBL
Match: A0A0A0L595_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G154410 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 8.6e-12
Identity = 54/121 (44.63%), Postives = 70/121 (57.85%), Query Frame = 1 

Query: 1   MGLRSKMFVMVMVIGALGSAPLMVESQL--------LVNPLVTINGSLTGIPGGSLVGIP 60
           MGL+S + V+VMV GALGSAPLM E+Q         L+N   T+  +  G  G +    P
Sbjct: 1   MGLKSNLLVLVMVFGALGSAPLMAEAQFNIIGSLLKLINIQGTVFCTADGNIGTNATSTP 60

Query: 61  V-SNATVELDC-NGTVLSTTTTNSMGSFLLSSSLNNPTQ--INGLLNGCAAVVSTPLSVF 110
           V  NA V+L C NG ++STTTTN+ G F   S   NP Q  ++ LL+ C  VV TP+S  
Sbjct: 61  VFPNALVQLQCGNGNIVSTTTTNNGGIF---SMFLNPVQFVLSSLLSNCNLVVKTPISDC 118

[Close]
BLAST of MELO3C006672 vs. NCBI nr
Match: gi|659076843|ref|XP_008438894.1| (PREDICTED: uncharacterized protein LOC103483852 [Cucumis melo])

HSP 1 Score: 260.4 bits (664), Expect = 1.7e-66
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 1 

Query: 1   MGLRSKMFVMVMVIGALGSAPLMVESQLLVNPLVTINGSLTGIPGGSLVGIPVSNATVEL 60
           MGLRSKMFVMVMVIGALGSAPLMVESQLLVNPLVTINGSLTGIPGGSLVGIPVSNATVEL
Sbjct: 1   MGLRSKMFVMVMVIGALGSAPLMVESQLLVNPLVTINGSLTGIPGGSLVGIPVSNATVEL 60

Query: 61  DCNGTVLSTTTTNSMGSFLLSSSLNNPTQINGLLNGCAAVVSTPLSVFNPIDLESFGTFR 120
           DCNGTVLSTTTTNSMGSFLLSSSLNNPTQINGLLNGCAAVVSTPLSVFNPIDLESFGTFR
Sbjct: 61  DCNGTVLSTTTTNSMGSFLLSSSLNNPTQINGLLNGCAAVVSTPLSVFNPIDLESFGTFR 120

Query: 121 FSTNIRIVDNGDD 134
           FSTNIRIVDNGDD
Sbjct: 121 FSTNIRIVDNGDD 133

[Close]
BLAST of MELO3C006672 vs. NCBI nr
Match: gi|659076845|ref|XP_008438895.1| (PREDICTED: phylloplanin-like [Cucumis melo])

HSP 1 Score: 85.5 bits (210), Expect = 7.7e-14
Identity = 67/148 (45.27%), Postives = 83/148 (56.08%), Query Frame = 1 

Query: 1   MGLRSKMFVMVMVIGALGSAPLMVESQL--LVNPLV-----------TINGSLTGIPGGS 60
           MGL+SKM VMVMVIGALGSAPLM E+QL  ++  L+           T +G++  I   S
Sbjct: 1   MGLKSKMLVMVMVIGALGSAPLMAEAQLGNIIGSLLGVINVQGVVYCTADGNIGTINATS 60

Query: 61  LVGIPVSNATVELDC-NGTVLSTTTTNSMGSFLLSSSLNNPTQ--INGLLNGCAAVVSTP 120
               P  NA V+L C NG ++STTTTN+MGSF   S L NP Q  ++ LL  C  VV TP
Sbjct: 61  TPVFP--NAVVQLQCGNGNIVSTTTTNNMGSF---SMLLNPLQFLLSTLLTDCNVVVRTP 120

Query: 121 LSVFN-PIDLESFGTFRFSTNIRIVDNG 132
           L   N  +    F T R     R V +G
Sbjct: 121 LINCNATLPSTGFLTSRMQFVGRFVQDG 143

[Close]
BLAST of MELO3C006672 vs. NCBI nr
Match: gi|778678925|ref|XP_004134491.2| (PREDICTED: phylloplanin-like [Cucumis sativus])

HSP 1 Score: 78.2 bits (191), Expect = 1.2e-11
Identity = 54/121 (44.63%), Postives = 70/121 (57.85%), Query Frame = 1 

Query: 1   MGLRSKMFVMVMVIGALGSAPLMVESQL--------LVNPLVTINGSLTGIPGGSLVGIP 60
           MGL+S + V+VMV GALGSAPLM E+Q         L+N   T+  +  G  G +    P
Sbjct: 1   MGLKSNLLVLVMVFGALGSAPLMAEAQFNIIGSLLKLINIQGTVFCTADGNIGTNATSTP 60

Query: 61  V-SNATVELDC-NGTVLSTTTTNSMGSFLLSSSLNNPTQ--INGLLNGCAAVVSTPLSVF 110
           V  NA V+L C NG ++STTTTN+ G F   S   NP Q  ++ LL+ C  VV TP+S  
Sbjct: 61  VFPNALVQLQCGNGNIVSTTTTNNGGIF---SMFLNPVQFVLSSLLSNCNLVVKTPISDC 118

The following BLAST results are available for this feature:
BLAST of MELO3C006672 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L595_CUCSA8.6e-1244.63Uncharacterized protein OS=Cucumis sativus GN=Csa_3G154410 PE=4 SV=1[more]
BLAST of MELO3C006672 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659076843|ref|XP_008438894.1|1.7e-66100.00PREDICTED: uncharacterized protein LOC103483852 [Cucumis melo][more]
gi|659076845|ref|XP_008438895.1|7.7e-1445.27PREDICTED: phylloplanin-like [Cucumis melo][more]
gi|778678925|ref|XP_004134491.2|1.2e-1144.63PREDICTED: phylloplanin-like [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013783Ig-like_fold
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C006672T1MELO3C006672T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013783Immunoglobulin-like foldGENE3DG3DSA:2.60.40.10coord: 47..81
score: 6.

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C006672Csa3G154410Cucumber (Chinese Long) v2cumeB236
MELO3C006672Cla021749Watermelon (97103) v1mewmB461
MELO3C006672ClCG05G006170Watermelon (Charleston Gray)mewcgB427
MELO3C006672Cla97C05G087710Watermelon (97103) v2mewmbB434
MELO3C006672Bhi01G000728Wax gourdmewgoB529
MELO3C006672CSPI03G14510Wild cucumber (PI 183967)cpimeB230
MELO3C006672Cucsa.253000Cucumber (Gy14) v1cgymeB439
MELO3C006672Lsi05G015460Bottle gourd (USVL1VR-Ls)lsimeB369
MELO3C006672CsaV3_3G014750Cucumber (Chinese Long) v3cucmeB236
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C006672Silver-seed gourdcarmeB0074
MELO3C006672Silver-seed gourdcarmeB0610
MELO3C006672Silver-seed gourdcarmeB0701
MELO3C006672Silver-seed gourdcarmeB0828
MELO3C006672Watermelon (97103) v2mewmbB448
MELO3C006672Wax gourdmewgoB521
MELO3C006672Melon (DHL92) v3.5.1memeB051
MELO3C006672Melon (DHL92) v3.5.1memeB113
MELO3C006672Cucurbita maxima (Rimu)cmameB001
MELO3C006672Cucurbita maxima (Rimu)cmameB242
MELO3C006672Cucurbita maxima (Rimu)cmameB342
MELO3C006672Cucurbita maxima (Rimu)cmameB763
MELO3C006672Cucurbita maxima (Rimu)cmameB850
MELO3C006672Cucurbita moschata (Rifu)cmomeB230
MELO3C006672Cucurbita moschata (Rifu)cmomeB335
MELO3C006672Cucurbita moschata (Rifu)cmomeB832
MELO3C006672Cucurbita moschata (Rifu)cmomeB755
MELO3C006672Wild cucumber (PI 183967)cpimeB080
MELO3C006672Watermelon (Charleston Gray)mewcgB442
MELO3C006672Watermelon (97103) v1mewmB486
MELO3C006672Cucurbita pepo (Zucchini)cpemeB140
MELO3C006672Cucurbita pepo (Zucchini)cpemeB144
MELO3C006672Cucurbita pepo (Zucchini)cpemeB314
MELO3C006672Cucurbita pepo (Zucchini)cpemeB585
MELO3C006672Cucurbita pepo (Zucchini)cpemeB813
MELO3C006672Bottle gourd (USVL1VR-Ls)lsimeB029
MELO3C006672Cucumber (Gy14) v2cgybmeB070
MELO3C006672Cucumber (Gy14) v2cgybmeB200