MELO3C006414 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C006414
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionSprT-like domain-containing protein Spartan
Locationchr6 : 3083733 .. 3084443 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTTCCTCCTTCAACCTCCTCTGTTTGCTCTGTTTTTCCTCACATCCTTCTCTCCTTCTTGGTCTCTTCCATGGAATTCTTCCTCCTTTGGTAAATCGGGCTCCAACCCATCACTCGACGACATGTTGTTCACCTCCAGCGAGTCTTCCAGCAGGCCGTCTCGCCAAAACACAATTTTTGGTGCCCCTTGTGGGCTCTGTGGCCAAGTGATTTTTGGCTCTGAAGCTCTTAATCATCATTACAATTACCATTTCTTGCAGAATGAGCTTGCTTCTTTTAGAGGCCACTCTAATCCTTGCTCCGGTGTCTCTCACCGGCCGCCGTTTTTCCATGGCCAAGCCTCTGCTTCTCGAGAACCCCAAATGACGCTTAACGATTATTTAACGATGCCTCCATCTTTGAGAAGCCATTCAGGCGCCGCCATTGATATGGCTCACTTTCTTCCGCTTCATCCTTTGTTGGCTCGACCGCCGCCGCTGCCGCGAACCAGCACCCCCAATAGTATGAACTTTCAACAGAATCAGGCTGTGGCACGGCAGAGAAGGCAGGGGAACCAAATCCGATGGAATAACGGCGGAGTGAGGGAAGTTGGTGGCCAGCCGGCATCAGAACAGCAGCCACCCCAAGATGTGATTGATCTGAGTAGTGAGGAGAATGATTGTAGCTCTGATGGTTCGGAAGGCTTGGATTTGACACTGAGTCTCTAA

mRNA sequence

ATGGCCTTCCTCCTTCAACCTCCTCTGTTTGCTCTGTTTTTCCTCACATCCTTCTCTCCTTCTTGGTCTCTTCCATGGAATTCTTCCTCCTTTGGTAAATCGGGCTCCAACCCATCACTCGACGACATGTTGTTCACCTCCAGCGAGTCTTCCAGCAGGCCGTCTCGCCAAAACACAATTTTTGGTGCCCCTTGTGGGCTCTGTGGCCAAGTGATTTTTGGCTCTGAAGCTCTTAATCATCATTACAATTACCATTTCTTGCAGAATGAGCTTGCTTCTTTTAGAGGCCACTCTAATCCTTGCTCCGGTGTCTCTCACCGGCCGCCGTTTTTCCATGGCCAAGCCTCTGCTTCTCGAGAACCCCAAATGACGCTTAACGATTATTTAACGATGCCTCCATCTTTGAGAAGCCATTCAGGCGCCGCCATTGATATGGCTCACTTTCTTCCGCTTCATCCTTTGTTGGCTCGACCGCCGCCGCTGCCGCGAACCAGCACCCCCAATAGTATGAACTTTCAACAGAATCAGGCTGTGGCACGGCAGAGAAGGCAGGGGAACCAAATCCGATGGAATAACGGCGGAGTGAGGGAAGTTGGTGGCCAGCCGGCATCAGAACAGCAGCCACCCCAAGATGTGATTGATCTGAGTAGTGAGGAGAATGATTGTAGCTCTGATGGTTCGGAAGGCTTGGATTTGACACTGAGTCTCTAA

Coding sequence (CDS)

ATGGCCTTCCTCCTTCAACCTCCTCTGTTTGCTCTGTTTTTCCTCACATCCTTCTCTCCTTCTTGGTCTCTTCCATGGAATTCTTCCTCCTTTGGTAAATCGGGCTCCAACCCATCACTCGACGACATGTTGTTCACCTCCAGCGAGTCTTCCAGCAGGCCGTCTCGCCAAAACACAATTTTTGGTGCCCCTTGTGGGCTCTGTGGCCAAGTGATTTTTGGCTCTGAAGCTCTTAATCATCATTACAATTACCATTTCTTGCAGAATGAGCTTGCTTCTTTTAGAGGCCACTCTAATCCTTGCTCCGGTGTCTCTCACCGGCCGCCGTTTTTCCATGGCCAAGCCTCTGCTTCTCGAGAACCCCAAATGACGCTTAACGATTATTTAACGATGCCTCCATCTTTGAGAAGCCATTCAGGCGCCGCCATTGATATGGCTCACTTTCTTCCGCTTCATCCTTTGTTGGCTCGACCGCCGCCGCTGCCGCGAACCAGCACCCCCAATAGTATGAACTTTCAACAGAATCAGGCTGTGGCACGGCAGAGAAGGCAGGGGAACCAAATCCGATGGAATAACGGCGGAGTGAGGGAAGTTGGTGGCCAGCCGGCATCAGAACAGCAGCCACCCCAAGATGTGATTGATCTGAGTAGTGAGGAGAATGATTGTAGCTCTGATGGTTCGGAAGGCTTGGATTTGACACTGAGTCTCTAA

Protein sequence

MAFLLQPPLFALFFLTSFSPSWSLPWNSSSFGKSGSNPSLDDMLFTSSESSSRPSRQNTIFGAPCGLCGQVIFGSEALNHHYNYHFLQNELASFRGHSNPCSGVSHRPPFFHGQASASREPQMTLNDYLTMPPSLRSHSGAAIDMAHFLPLHPLLARPPPLPRTSTPNSMNFQQNQAVARQRRQGNQIRWNNGGVREVGGQPASEQQPPQDVIDLSSEENDCSSDGSEGLDLTLSL*
Homology
[Close]
BLAST of MELO3C006414 vs. TrEMBL
Match: A0A0A0L892_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G134950 PE=4 SV=1)

HSP 1 Score: 427.6 bits (1098), Expect = 1.0e-116
Identity = 211/241 (87.55%), Postives = 223/241 (92.53%), Query Frame = 1 

Query: 1   MAFLLQPPLFALFFLTSFSPSWSLPWNSSSFGKSGSNPSLDDMLFTSSESSSRPSRQ-NT 60
           M FLLQPPLFALFFLTSFSPS S P NSSSFG+S SNPSL++MLFTSSESS RPSR+ NT
Sbjct: 1   MPFLLQPPLFALFFLTSFSPSLSFPRNSSSFGESSSNPSLNNMLFTSSESSGRPSRRKNT 60

Query: 61  IFGAPCGLCGQVIFGSEALNHHYNYHFLQNELASFRGHSNPCSGVSHRPP----FFHGQA 120
           IFGAPCGLCGQVIFGSEALNHHYNYHFLQNELASFRGHSNP SG+S RPP    +FHGQA
Sbjct: 61  IFGAPCGLCGQVIFGSEALNHHYNYHFLQNELASFRGHSNPSSGISQRPPLWSNYFHGQA 120

Query: 121 SASREPQMTLNDYLTMPPSLRSHSGAAIDMAHFLPLHPLLARPPPLPRTSTPNSMNFQQN 180
           SASREPQMTLNDYLTMPPSLRS+SGAAIDMAHFLPLHPLLA+PPPLPRTST N MNFQQN
Sbjct: 121 SASREPQMTLNDYLTMPPSLRSYSGAAIDMAHFLPLHPLLAQPPPLPRTSTANRMNFQQN 180

Query: 181 QAVARQRRQGNQIRWNNGGVREVGGQPASEQQPPQDVIDLSSEENDCSSDGSEGLDLTLS 237
           QAVA  RRQGNQ++WNNGGVREVGGQPASE+QPPQDVIDL+SEENDCSSD SEGLDLTLS
Sbjct: 181 QAVAGHRRQGNQVQWNNGGVREVGGQPASEEQPPQDVIDLNSEENDCSSDDSEGLDLTLS 240

[Close]
BLAST of MELO3C006414 vs. NCBI nr
Match: gi|700201714|gb|KGN56847.1| (hypothetical protein Csa_3G134950 [Cucumis sativus])

HSP 1 Score: 427.6 bits (1098), Expect = 1.5e-116
Identity = 211/241 (87.55%), Postives = 223/241 (92.53%), Query Frame = 1 

Query: 1   MAFLLQPPLFALFFLTSFSPSWSLPWNSSSFGKSGSNPSLDDMLFTSSESSSRPSRQ-NT 60
           M FLLQPPLFALFFLTSFSPS S P NSSSFG+S SNPSL++MLFTSSESS RPSR+ NT
Sbjct: 1   MPFLLQPPLFALFFLTSFSPSLSFPRNSSSFGESSSNPSLNNMLFTSSESSGRPSRRKNT 60

Query: 61  IFGAPCGLCGQVIFGSEALNHHYNYHFLQNELASFRGHSNPCSGVSHRPP----FFHGQA 120
           IFGAPCGLCGQVIFGSEALNHHYNYHFLQNELASFRGHSNP SG+S RPP    +FHGQA
Sbjct: 61  IFGAPCGLCGQVIFGSEALNHHYNYHFLQNELASFRGHSNPSSGISQRPPLWSNYFHGQA 120

Query: 121 SASREPQMTLNDYLTMPPSLRSHSGAAIDMAHFLPLHPLLARPPPLPRTSTPNSMNFQQN 180
           SASREPQMTLNDYLTMPPSLRS+SGAAIDMAHFLPLHPLLA+PPPLPRTST N MNFQQN
Sbjct: 121 SASREPQMTLNDYLTMPPSLRSYSGAAIDMAHFLPLHPLLAQPPPLPRTSTANRMNFQQN 180

Query: 181 QAVARQRRQGNQIRWNNGGVREVGGQPASEQQPPQDVIDLSSEENDCSSDGSEGLDLTLS 237
           QAVA  RRQGNQ++WNNGGVREVGGQPASE+QPPQDVIDL+SEENDCSSD SEGLDLTLS
Sbjct: 181 QAVAGHRRQGNQVQWNNGGVREVGGQPASEEQPPQDVIDLNSEENDCSSDDSEGLDLTLS 240

The following BLAST results are available for this feature:
BLAST of MELO3C006414 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L892_CUCSA1.0e-11687.55Uncharacterized protein OS=Cucumis sativus GN=Csa_3G134950 PE=4 SV=1[more]
BLAST of MELO3C006414 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700201714|gb|KGN56847.1|1.5e-11687.55hypothetical protein Csa_3G134950 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007087Zinc finger, C2H2
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003674 molecular_function
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C006414T1MELO3C006414T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007087Zinc finger, C2H2PROSITEPS00028ZINC_FINGER_C2H2_1coord: 65..85
scor

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C006414Csa3G134950Cucumber (Chinese Long) v2cumeB236
MELO3C006414Cla021513Watermelon (97103) v1mewmB461
MELO3C006414Cla97C05G084990Watermelon (97103) v2mewmbB434
MELO3C006414Bhi01G000516Wax gourdmewgoB534
MELO3C006414CSPI03G11850Wild cucumber (PI 183967)cpimeB230
MELO3C006414CmoCh06G013250Cucurbita moschata (Rifu)cmomeB755
MELO3C006414Lsi05G017390Bottle gourd (USVL1VR-Ls)lsimeB378
MELO3C006414Cp4.1LG08g03330Cucurbita pepo (Zucchini)cpemeB813
MELO3C006414Cp4.1LG00g05060Cucurbita pepo (Zucchini)cpemeB015
MELO3C006414CsGy3G011980Cucumber (Gy14) v2cgybmeB200
MELO3C006414CsaV3_3G012000Cucumber (Chinese Long) v3cucmeB236
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C006414Cucumber (Chinese Long) v3cucmeB147
MELO3C006414Cucumber (Chinese Long) v3cucmeB245
MELO3C006414Watermelon (97103) v2mewmbB448
MELO3C006414Watermelon (97103) v2mewmbB451
MELO3C006414Wax gourdmewgoB514
MELO3C006414Wax gourdmewgoB552
MELO3C006414Melon (DHL92) v3.5.1memeB140
MELO3C006414Melon (DHL92) v3.5.1memeB147
MELO3C006414Cucumber (Gy14) v1cgymeB439
MELO3C006414Cucumber (Gy14) v1cgymeB625
MELO3C006414Cucurbita maxima (Rimu)cmameB242
MELO3C006414Cucurbita maxima (Rimu)cmameB344
MELO3C006414Cucurbita maxima (Rimu)cmameB482
MELO3C006414Cucurbita maxima (Rimu)cmameB580
MELO3C006414Cucurbita maxima (Rimu)cmameB763
MELO3C006414Cucurbita maxima (Rimu)cmameB850
MELO3C006414Cucurbita moschata (Rifu)cmomeB230
MELO3C006414Cucurbita moschata (Rifu)cmomeB337
MELO3C006414Cucurbita moschata (Rifu)cmomeB474
MELO3C006414Cucurbita moschata (Rifu)cmomeB568
MELO3C006414Cucurbita moschata (Rifu)cmomeB832
MELO3C006414Wild cucumber (PI 183967)cpimeB144
MELO3C006414Wild cucumber (PI 183967)cpimeB239
MELO3C006414Cucumber (Chinese Long) v2cumeB145
MELO3C006414Cucumber (Chinese Long) v2cumeB240
MELO3C006414Watermelon (Charleston Gray)mewcgB427
MELO3C006414Watermelon (Charleston Gray)mewcgB441
MELO3C006414Watermelon (Charleston Gray)mewcgB445
MELO3C006414Watermelon (97103) v1mewmB486
MELO3C006414Watermelon (97103) v1mewmB459
MELO3C006414Cucurbita pepo (Zucchini)cpemeB143
MELO3C006414Cucurbita pepo (Zucchini)cpemeB316
MELO3C006414Cucurbita pepo (Zucchini)cpemeB585
MELO3C006414Cucurbita pepo (Zucchini)cpemeB702
MELO3C006414Bottle gourd (USVL1VR-Ls)lsimeB029
MELO3C006414Bottle gourd (USVL1VR-Ls)lsimeB382
MELO3C006414Cucumber (Gy14) v2cgybmeB126
MELO3C006414Silver-seed gourdcarmeB0236
MELO3C006414Silver-seed gourdcarmeB0240
MELO3C006414Silver-seed gourdcarmeB0749
MELO3C006414Silver-seed gourdcarmeB0780
MELO3C006414Silver-seed gourdcarmeB0941
MELO3C006414Silver-seed gourdcarmeB1050