Cp4.1LG00g05060 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG00g05060
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Unknown protein
Location	Cp4.1LG00 : 18939473 .. 18940228 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGCCTTCTTCCTTCAAGCTCCTCTGTTTGCTCTGTTTGCTCTGTTTGCTCTGTTTTTCCTCACAGCCTTCTCACCTTCTCTGGCTTTCCCATGGAGTTCTTCCCCCTATGAAAAATCTGGTTGGAACCCATCATTAGAAGAGCTGTTATCGGCCTCCGGCGAGACTTCTTCCCGGCCGCCTCGCCGGAAAAGCACAATTTTTGGTGCCCCTTGTGGGCTCTGTGGTCAAGTGATTTTTGGCTCTGAAGCTCTTAATCACCATTACAATTACCATTTATTGCAGAATGATCTTGCTTCTTATGGTAGCCGCTTGGTTCCTTCTTCGGCAAGCTCTCAGCGGCCGCCGGTATGGACCGATTATTTCCATGGACAAGCCTCTGCTTCTCGAGAACCCGAAATTACGCTTAACGATTGTTTGACGATGCCACCGCCGCGGCAGCCGTCGTCTCTTAGAAGCTACCCCAGCCCCACCGTCGACATGGCTCACTTATTACCGCTTCATCCGTTGTTGGCCCAACCGCCGCCGCCGCGTCGGACTACCACCGCCAACGGTGTTAACGAGGCTGCAGCAGGGCAGAGGTGGCAGGGGAACCAAAATCAAAGGAATAATGGTGGCGCAAGGACGACCGGTGCCCGGTCGGCGGCGGAGCAGCGGCAGCCACGGCAAGAAGTGATTGATCTCAACAGTACTGAGGAGAATGATTGTAGCTCTGATGGGTCAGATGGCTTGGATTTGACATTAAGCCTTTGA

mRNA sequence

ATGGCCGCCTTCTTCCTTCAAGCTCCTCTGTTTGCTCTGTTTGCTCTGTTTGCTCTGTTTTTCCTCACAGCCTTCTCACCTTCTCTGGCTTTCCCATGGAGTTCTTCCCCCTATGAAAAATCTGGTTGGAACCCATCATTAGAAGAGCTGTTATCGGCCTCCGGCGAGACTTCTTCCCGGCCGCCTCGCCGGAAAAGCACAATTTTTGGTGCCCCTTGTGGGCTCTGTGGTCAAGTGATTTTTGGCTCTGAAGCTCTTAATCACCATTACAATTACCATTTATTGCAGAATGATCTTGCTTCTTATGGTAGCCGCTTGGTTCCTTCTTCGGCAAGCTCTCAGCGGCCGCCGGTATGGACCGATTATTTCCATGGACAAGCCTCTGCTTCTCGAGAACCCGAAATTACGCTTAACGATTGTTTGACGATGCCACCGCCGCGGCAGCCGTCGTCTCTTAGAAGCTACCCCAGCCCCACCGTCGACATGGCTCACTTATTACCGCTTCATCCGTTGTTGGCCCAACCGCCGCCGCCGCGTCGGACTACCACCGCCAACGGTGTTAACGAGGCTGCAGCAGGGCAGAGGTGGCAGGGGAACCAAAATCAAAGGAATAATGGTGGCGCAAGGACGACCGGTGCCCGGTCGGCGGCGGAGCAGCGGCAGCCACGGCAAGAAGTGATTGATCTCAACAGTACTGAGGAGAATGATTGTAGCTCTGATGGGTCAGATGGCTTGGATTTGACATTAAGCCTTTGA

Coding sequence (CDS)

ATGGCCGCCTTCTTCCTTCAAGCTCCTCTGTTTGCTCTGTTTGCTCTGTTTGCTCTGTTTTTCCTCACAGCCTTCTCACCTTCTCTGGCTTTCCCATGGAGTTCTTCCCCCTATGAAAAATCTGGTTGGAACCCATCATTAGAAGAGCTGTTATCGGCCTCCGGCGAGACTTCTTCCCGGCCGCCTCGCCGGAAAAGCACAATTTTTGGTGCCCCTTGTGGGCTCTGTGGTCAAGTGATTTTTGGCTCTGAAGCTCTTAATCACCATTACAATTACCATTTATTGCAGAATGATCTTGCTTCTTATGGTAGCCGCTTGGTTCCTTCTTCGGCAAGCTCTCAGCGGCCGCCGGTATGGACCGATTATTTCCATGGACAAGCCTCTGCTTCTCGAGAACCCGAAATTACGCTTAACGATTGTTTGACGATGCCACCGCCGCGGCAGCCGTCGTCTCTTAGAAGCTACCCCAGCCCCACCGTCGACATGGCTCACTTATTACCGCTTCATCCGTTGTTGGCCCAACCGCCGCCGCCGCGTCGGACTACCACCGCCAACGGTGTTAACGAGGCTGCAGCAGGGCAGAGGTGGCAGGGGAACCAAAATCAAAGGAATAATGGTGGCGCAAGGACGACCGGTGCCCGGTCGGCGGCGGAGCAGCGGCAGCCACGGCAAGAAGTGATTGATCTCAACAGTACTGAGGAGAATGATTGTAGCTCTGATGGGTCAGATGGCTTGGATTTGACATTAAGCCTTTGA

Protein sequence

MAAFFLQAPLFALFALFALFFLTAFSPSLAFPWSSSPYEKSGWNPSLEELLSASGETSSRPPRRKSTIFGAPCGLCGQVIFGSEALNHHYNYHLLQNDLASYGSRLVPSSASSQRPPVWTDYFHGQASASREPEITLNDCLTMPPPRQPSSLRSYPSPTVDMAHLLPLHPLLAQPPPPRRTTTANGVNEAAAGQRWQGNQNQRNNGGARTTGARSAAEQRQPRQEVIDLNSTEENDCSSDGSDGLDLTLSL

Homology

[Close]

BLAST of Cp4.1LG00g05060 vs. TrEMBL
Match: A0A0A0L892_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G134950 PE=4 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 2.6e-78
Identity = 168/252 (66.67%), Postives = 192/252 (76.19%), Query Frame = 1


Query: 4   FFLQAPLFALFALFALFFLTAFSPSLAFPWSSSPYEKSGWNPSLEELLSASGETSSRPPR 63
           F LQ PLFA      LFFLT+FSPSL+FP +SS + +S  NPSL  +L  S E+S RP R
Sbjct: 3   FLLQPPLFA------LFFLTSFSPSLSFPRNSSSFGESSSNPSLNNMLFTSSESSGRPSR 62

Query: 64  RKSTIFGAPCGLCGQVIFGSEALNHHYNYHLLQNDLASYGSRLVPSSASSQRPPVWTDYF 123
           RK+TIFGAPCGLCGQVIFGSEALNHHYNYH LQN+LAS+     PSS  SQRPP+W++YF
Sbjct: 63  RKNTIFGAPCGLCGQVIFGSEALNHHYNYHFLQNELASFRGHSNPSSGISQRPPLWSNYF 122

Query: 124 HGQASASREPEITLNDCLTMPPPRQPSSLRSYPSPTVDMAHLLPLHPLLAQPPPPRRTTT 183
           HGQASASREP++TLND LTMPP     SLRSY    +DMAH LPLHPLLAQPPP  RT+T
Sbjct: 123 HGQASASREPQMTLNDYLTMPP-----SLRSYSGAAIDMAHFLPLHPLLAQPPPLPRTST 182

Query: 184 ANGV----NEAAAGQRWQGNQNQRNNGGARTTGARSAAEQRQPRQEVIDLNSTEENDCSS 243
           AN +    N+A AG R QGNQ Q NNGG R  G + A+E+ QP Q+VIDLNS EENDCSS
Sbjct: 183 ANRMNFQQNQAVAGHRRQGNQVQWNNGGVREVGGQPASEE-QPPQDVIDLNS-EENDCSS 241

Query: 244 DGSDGLDLTLSL 252
           D S+GLDLTLSL
Sbjct: 243 DDSEGLDLTLSL 241

[Close]

BLAST of Cp4.1LG00g05060 vs. NCBI nr
Match: gi|700201714|gb|KGN56847.1| (hypothetical protein Csa_3G134950 [Cucumis sativus])

HSP 1 Score: 300.1 bits (767), Expect = 3.7e-78
Identity = 168/252 (66.67%), Postives = 192/252 (76.19%), Query Frame = 1


Query: 4   FFLQAPLFALFALFALFFLTAFSPSLAFPWSSSPYEKSGWNPSLEELLSASGETSSRPPR 63
           F LQ PLFA      LFFLT+FSPSL+FP +SS + +S  NPSL  +L  S E+S RP R
Sbjct: 3   FLLQPPLFA------LFFLTSFSPSLSFPRNSSSFGESSSNPSLNNMLFTSSESSGRPSR 62

Query: 64  RKSTIFGAPCGLCGQVIFGSEALNHHYNYHLLQNDLASYGSRLVPSSASSQRPPVWTDYF 123
           RK+TIFGAPCGLCGQVIFGSEALNHHYNYH LQN+LAS+     PSS  SQRPP+W++YF
Sbjct: 63  RKNTIFGAPCGLCGQVIFGSEALNHHYNYHFLQNELASFRGHSNPSSGISQRPPLWSNYF 122

Query: 124 HGQASASREPEITLNDCLTMPPPRQPSSLRSYPSPTVDMAHLLPLHPLLAQPPPPRRTTT 183
           HGQASASREP++TLND LTMPP     SLRSY    +DMAH LPLHPLLAQPPP  RT+T
Sbjct: 123 HGQASASREPQMTLNDYLTMPP-----SLRSYSGAAIDMAHFLPLHPLLAQPPPLPRTST 182

Query: 184 ANGV----NEAAAGQRWQGNQNQRNNGGARTTGARSAAEQRQPRQEVIDLNSTEENDCSS 243
           AN +    N+A AG R QGNQ Q NNGG R  G + A+E+ QP Q+VIDLNS EENDCSS
Sbjct: 183 ANRMNFQQNQAVAGHRRQGNQVQWNNGGVREVGGQPASEE-QPPQDVIDLNS-EENDCSS 241

Query: 244 DGSDGLDLTLSL 252
           D S+GLDLTLSL
Sbjct: 243 DDSEGLDLTLSL 241

The following BLAST results are available for this feature:

BLAST of Cp4.1LG00g05060 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG00g05060 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L892_CUCSA	2.6e-78	66.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G134950 PE=4 SV=1	[more]

BLAST of Cp4.1LG00g05060 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG00g05060 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700201714\|gb\|KGN56847.1\|	3.7e-78	66.67	hypothetical protein Csa_3G134950 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR007087	Zinc finger, C2H2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG00g05060.1	Cp4.1LG00g05060.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007087	Zinc finger, C2H2	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 73..93 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG00g05060	CmoCh06G013250	Cucurbita moschata (Rifu)	cmocpeB760
Cp4.1LG00g05060	Cla021513	Watermelon (97103) v1	cpewmB011
Cp4.1LG00g05060	Csa3G134950	Cucumber (Chinese Long) v2	cpecuB012
Cp4.1LG00g05060	MELO3C006414	Melon (DHL92) v3.5.1	cpemeB015
Cp4.1LG00g05060	CSPI03G11850	Wild cucumber (PI 183967)	cpecpiB009
Cp4.1LG00g05060	Lsi05G017390	Bottle gourd (USVL1VR-Ls)	cpelsiB016
Cp4.1LG00g05060	MELO3C006414.2	Melon (DHL92) v3.6.1	cpemedB017
Cp4.1LG00g05060	CsaV3_3G012000	Cucumber (Chinese Long) v3	cpecucB0014
Cp4.1LG00g05060	Bhi01G000516	Wax gourd	cpewgoB0011
Cp4.1LG00g05060	CsGy3G011980	Cucumber (Gy14) v2	cgybcpeB283

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG00g05060	Cp4.1LG08g03330	Cucurbita pepo (Zucchini)	cpecpeB017

The following block(s) are covering this gene:

None