MELO3C006036 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C006036
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Putative WRKY transcription factor 30
Location	chr6 : 710107 .. 710424 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACTTATGGAACACAACAGTTTGATCTCCGAGTTGACTCAAGGGAAGGAACTCGCCCTTCAACTCAGAACTCATTTTCATCCTTCTTCATCCCCCGAACAAGCTTGCCTTTTCTTGACTGAAATGATTCAATCTTCTTTCGAGAAAGCACTTTTGCTTCTCAATTTCAATTCTTCTAATTCAAAAACCCACCAAATTGCTTTGTTGGATGCACAAGAAGAACAAGAAGAAGAAAACAAGAAGAAGAAGGAGAAGAAGTGGATGAATCATCCGCTAAGAAAAAGAGGAAGATCAGTAGAAGCAGAGATGTGTTGA

mRNA sequence

ATGGAACTTATGGAACACAACAGTTTGATCTCCGAGTTGACTCAAGGGAAGGAACTCGCCCTTCAACTCAGAACTCATTTTCATCCTTCTTCATCCCCCGAACAAGCTTGCCTTTTCTTGACTGAAATGATTCAATCTTCTTTCGAGAAAGCACTTTTGCTTCTCAATTTCAATTCTTCTAATTCAAAAACCCACCAAATTGCTTTGTTGGATGCACAAGAAGAACAAGAAGAAGAAAACAAGAAGAAGAAGGAGAAGAAGTGGATGAATCATCCGCTAAGAAAAAGAGGAAGATCAGTAGAAGCAGAGATGTGTTGA

Coding sequence (CDS)

ATGGAACTTATGGAACACAACAGTTTGATCTCCGAGTTGACTCAAGGGAAGGAACTCGCCCTTCAACTCAGAACTCATTTTCATCCTTCTTCATCCCCCGAACAAGCTTGCCTTTTCTTGACTGAAATGATTCAATCTTCTTTCGAGAAAGCACTTTTGCTTCTCAATTTCAATTCTTCTAATTCAAAAACCCACCAAATTGCTTTGTTGGATGCACAAGAAGAACAAGAAGAAGAAAACAAGAAGAAGAAGGAGAAGAAGTGGATGAATCATCCGCTAAGAAAAAGAGGAAGATCAGTAGAAGCAGAGATGTGTTGA

Protein sequence

MELMEHNSLISELTQGKELALQLRTHFHPSSSPEQACLFLTEMIQSSFEKALLLLNFNSSNSKTHQIALLDAQEEQEEENKKKKEKKWMNHPLRKRGRSVEAEMC*

Homology

[Close]

BLAST of MELO3C006036 vs. TrEMBL
Match: A0A0A0L772_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119700 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.2e-32
Identity = 76/102 (74.51%), Postives = 86/102 (84.31%), Query Frame = 1


Query: 1   MELMEHNSLISELTQGKELALQLRTHFHPSSSPEQACLFLTEMIQSSFEKALLLLNFNSS 60
           ME+MEHNSLISELTQGKELALQLRTH HPSSSPEQACLFLTEMIQSSFEKALLLLNFNSS
Sbjct: 1   MEIMEHNSLISELTQGKELALQLRTHLHPSSSPEQACLFLTEMIQSSFEKALLLLNFNSS 60

Query: 61  NSKTHQIALLDAQEEQEEENKKKKEKKWMNHPLRKRGRSVEA 103
           N KTHQI+ LD QE +EEE ++++ ++      RK  RS +A
Sbjct: 61  NLKTHQISSLDEQEGEEEEEEEEEVEESSTKKKRKISRSRDA 102

[Close]

BLAST of MELO3C006036 vs. TrEMBL
Match: B6DQ60_CUCSA (Putative WRKY transcription factor 30 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 5.9e-24
Identity = 61/88 (69.32%), Postives = 71/88 (80.68%), Query Frame = 1


Query: 15  QGKELALQLRTHFHPSSSPEQACLFLTEMIQSSFEKALLLLNFNSSNSKTHQIALLDAQE 74
           QG+ELALQLRTH HPSSSPEQACLFLTEMIQSSFEKALLLLNFNSSN KTHQI+  D QE
Sbjct: 1   QGRELALQLRTHLHPSSSPEQACLFLTEMIQSSFEKALLLLNFNSSNLKTHQISSWDEQE 60

Query: 75  EQEEENKKKKEKKWMNHPLRKRGRSVEA 103
            +EEE ++++ ++      RK  RS +A
Sbjct: 61  GEEEEEEEEEVEESSTKKKRKISRSRDA 88

[Close]

BLAST of MELO3C006036 vs. TrEMBL
Match: E7CEY4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=WRKY50 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.3e-07
Identity = 42/103 (40.78%), Postives = 56/103 (54.37%), Query Frame = 1


Query: 4   MEHNSLISELTQGKELALQLRTHFHPSSSPEQACLFLTEMIQSSFEKALLLLNFNSSNSK 63
           ME  SLI EL QGK+LA QLRTH HPSSS     + L + I  S+E ALL L+  ++ S 
Sbjct: 1   MEFLSLIQELNQGKQLANQLRTHLHPSSSSHG--ILLIDKILRSYENALLALSGGAAASV 60

Query: 64  THQIALLDAQEEQEEENKKKK-EKKWMNHPLRKRGRSVEAEMC 106
              IA ++A  +  + +KK+K   KW          +VE   C
Sbjct: 61  NSAIAPVNAAVQDGDVSKKRKVMAKWSEQVKVSSASAVEGPGC 101

[Close]

BLAST of MELO3C006036 vs. TrEMBL
Match: C9DHZ5_9ROSI (WRKY transcription factor 6 OS=(Populus tomentosa x Populus bolleana) x Populus tomentosa PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.9e-06
Identity = 34/55 (61.82%), Postives = 41/55 (74.55%), Query Frame = 1


Query: 5  EHNSLISELTQGKELALQLRTHFHPSSSPEQACLFLTEMIQSSFEKALLLLNFNS 60
          EH +LISEL+QGKELA QL  H +PSSS E A  FL + I SS+EKAL LLN+ +
Sbjct: 8  EHKTLISELSQGKELAKQLSNHLNPSSSLE-ARQFLVDKILSSYEKALSLLNWGA 61

[Close]

BLAST of MELO3C006036 vs. TrEMBL
Match: B9I8V9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s09190g PE=4 SV=2)

HSP 1 Score: 59.7 bits (143), Expect = 2.5e-06
Identity = 33/55 (60.00%), Postives = 41/55 (74.55%), Query Frame = 1


Query: 5  EHNSLISELTQGKELALQLRTHFHPSSSPEQACLFLTEMIQSSFEKALLLLNFNS 60
          EH +LISELTQGKELA QL  H +PS+S E A  FL + I SS+EKAL +LN+ +
Sbjct: 8  EHKTLISELTQGKELAKQLSNHLNPSASLE-ARQFLVDKILSSYEKALSMLNWGA 61

[Close]

BLAST of MELO3C006036 vs. NCBI nr
Match: gi|659075009|ref|XP_008437915.1| (PREDICTED: probable WRKY transcription factor 46 [Cucumis melo])

HSP 1 Score: 159.1 bits (401), Expect = 4.3e-36
Identity = 82/96 (85.42%), Postives = 88/96 (91.67%), Query Frame = 1


Query: 1  MELMEHNSLISELTQGKELALQLRTHFHPSSSPEQACLFLTEMIQSSFEKALLLLNFNSS 60
          MELMEHNSLISELTQGKELALQLRTHFHPSSSPEQACLFLTEMIQSSFEKALLLLNFNSS
Sbjct: 1  MELMEHNSLISELTQGKELALQLRTHFHPSSSPEQACLFLTEMIQSSFEKALLLLNFNSS 60

Query: 61 NSKTHQIALLDAQEEQEEENKKKKEKKWMNHPLRKR 97
          NSKTHQIALLDAQEEQEEE +++ E+   +   +KR
Sbjct: 61 NSKTHQIALLDAQEEQEEEQEEEGEEVDESSAKKKR 96

[Close]

BLAST of MELO3C006036 vs. NCBI nr
Match: gi|778676947|ref|XP_011650695.1| (PREDICTED: probable WRKY transcription factor 46 [Cucumis sativus])

HSP 1 Score: 147.1 bits (370), Expect = 1.7e-32
Identity = 76/102 (74.51%), Postives = 86/102 (84.31%), Query Frame = 1


Query: 1   MELMEHNSLISELTQGKELALQLRTHFHPSSSPEQACLFLTEMIQSSFEKALLLLNFNSS 60
           ME+MEHNSLISELTQGKELALQLRTH HPSSSPEQACLFLTEMIQSSFEKALLLLNFNSS
Sbjct: 1   MEIMEHNSLISELTQGKELALQLRTHLHPSSSPEQACLFLTEMIQSSFEKALLLLNFNSS 60

Query: 61  NSKTHQIALLDAQEEQEEENKKKKEKKWMNHPLRKRGRSVEA 103
           N KTHQI+ LD QE +EEE ++++ ++      RK  RS +A
Sbjct: 61  NLKTHQISSLDEQEGEEEEEEEEEVEESSTKKKRKISRSRDA 102

[Close]

BLAST of MELO3C006036 vs. NCBI nr
Match: gi|206604171|gb|ACI16506.1| (putative WRKY transcription factor 30 [Cucumis sativus])

HSP 1 Score: 118.2 bits (295), Expect = 8.5e-24
Identity = 61/88 (69.32%), Postives = 71/88 (80.68%), Query Frame = 1


Query: 15  QGKELALQLRTHFHPSSSPEQACLFLTEMIQSSFEKALLLLNFNSSNSKTHQIALLDAQE 74
           QG+ELALQLRTH HPSSSPEQACLFLTEMIQSSFEKALLLLNFNSSN KTHQI+  D QE
Sbjct: 1   QGRELALQLRTHLHPSSSPEQACLFLTEMIQSSFEKALLLLNFNSSNLKTHQISSWDEQE 60

Query: 75  EQEEENKKKKEKKWMNHPLRKRGRSVEA 103
            +EEE ++++ ++      RK  RS +A
Sbjct: 61  GEEEEEEEEEVEESSTKKKRKISRSRDA 88

[Close]

BLAST of MELO3C006036 vs. NCBI nr
Match: gi|659124087|ref|XP_008461982.1| (PREDICTED: probable WRKY transcription factor 53 [Cucumis melo])

HSP 1 Score: 63.9 bits (154), Expect = 1.9e-07
Identity = 42/103 (40.78%), Postives = 54/103 (52.43%), Query Frame = 1


Query: 4   MEHNSLISELTQGKELALQLRTHFHPSSSPEQACLFLTEMIQSSFEKALLLLNFNSSNSK 63
           ME  SLI EL QGK+LA QLR H HPSSS     + L + I  S+E ALL L+     S 
Sbjct: 1   MEFLSLIQELNQGKQLANQLRNHLHPSSSSHG--ILLVDKILRSYENALLALSAGGGASV 60

Query: 64  THQIALLDAQEEQEEENKKKK-EKKWMNHPLRKRGRSVEAEMC 106
              IA ++A  +  + +KK+K   KW        G +VE   C
Sbjct: 61  NSAIAPVNAAVKDGDVSKKRKLMAKWSEQVKVSSGSAVEGPCC 101

[Close]

BLAST of MELO3C006036 vs. NCBI nr
Match: gi|525507306|ref|NP_001267693.1| (probable WRKY transcription factor 46-like [Cucumis sativus])

HSP 1 Score: 63.2 bits (152), Expect = 3.2e-07
Identity = 42/103 (40.78%), Postives = 56/103 (54.37%), Query Frame = 1


Query: 4   MEHNSLISELTQGKELALQLRTHFHPSSSPEQACLFLTEMIQSSFEKALLLLNFNSSNSK 63
           ME  SLI EL QGK+LA QLRTH HPSSS     + L + I  S+E ALL L+  ++ S 
Sbjct: 1   MEFLSLIQELNQGKQLANQLRTHLHPSSSSHG--ILLIDKILRSYENALLALSGGAAASV 60

Query: 64  THQIALLDAQEEQEEENKKKK-EKKWMNHPLRKRGRSVEAEMC 106
              IA ++A  +  + +KK+K   KW          +VE   C
Sbjct: 61  NSAIAPVNAAVQDGDVSKKRKVMAKWSEQVKVSSASAVEGPGC 101

The following BLAST results are available for this feature:

BLAST of MELO3C006036 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L772_CUCSA	1.2e-32	74.51	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119700 PE=4 SV=1	[more]
B6DQ60_CUCSA	5.9e-24	69.32	Putative WRKY transcription factor 30 (Fragment) OS=Cucumis sativus PE=2 SV=1	[more]
E7CEY4_CUCSA	2.3e-07	40.78	Uncharacterized protein OS=Cucumis sativus GN=WRKY50 PE=2 SV=1	[more]
C9DHZ5_9ROSI	1.9e-06	61.82	WRKY transcription factor 6 OS=(Populus tomentosa x Populus bolleana) x Populus ...	[more]
B9I8V9_POPTR	2.5e-06	60.00	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s09190g PE=4 SV=2	[more]

BLAST of MELO3C006036 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659075009\|ref\|XP_008437915.1\|	4.3e-36	85.42	PREDICTED: probable WRKY transcription factor 46 [Cucumis melo]	[more]
gi\|778676947\|ref\|XP_011650695.1\|	1.7e-32	74.51	PREDICTED: probable WRKY transcription factor 46 [Cucumis sativus]	[more]
gi\|206604171\|gb\|ACI16506.1\|	8.5e-24	69.32	putative WRKY transcription factor 30 [Cucumis sativus]	[more]
gi\|659124087\|ref\|XP_008461982.1\|	1.9e-07	40.78	PREDICTED: probable WRKY transcription factor 53 [Cucumis melo]	[more]
gi\|525507306\|ref\|NP_001267693.1\|	3.2e-07	40.78	probable WRKY transcription factor 46-like [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU44317	melon EST collection version 4.0	transcribed_cluster
MU62968	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C006036T1	MELO3C006036T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU44317	MU44317	transcribed_cluster
MU62968	MU62968	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 67..87 scor
None	No IPR available	PANTHER	PTHR32096	FAMILY NOT NAMED	coord: 1..60 score: 2.4
None	No IPR available	PANTHER	PTHR32096:SF20	SUBFAMILY NOT NAMED	coord: 1..60 score: 2.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C006036	Csa3G119700	Cucumber (Chinese Long) v2	cumeB236
MELO3C006036	Cla021170	Watermelon (97103) v1	mewmB461
MELO3C006036	ClCG05G000940	Watermelon (Charleston Gray)	mewcgB427
MELO3C006036	Cla97C05G081140	Watermelon (97103) v2	mewmbB434
MELO3C006036	Bhi01G000336	Wax gourd	mewgoB540
MELO3C006036	CSPI03G08040	Wild cucumber (PI 183967)	cpimeB230
MELO3C006036	Cucsa.259110	Cucumber (Gy14) v1	cgymeB439
MELO3C006036	CmaCh00G002830	Cucurbita maxima (Rimu)	cmameB004
MELO3C006036	CmaCh14G020980	Cucurbita maxima (Rimu)	cmameB242
MELO3C006036	CmoCh06G010490	Cucurbita moschata (Rifu)	cmomeB755
MELO3C006036	Lsi05G021100	Bottle gourd (USVL1VR-Ls)	lsimeB378
MELO3C006036	Cp4.1LG08g00890	Cucurbita pepo (Zucchini)	cpemeB815
MELO3C006036	CsGy3G008200	Cucumber (Gy14) v2	cgybmeB200
MELO3C006036	Carg27348	Silver-seed gourd	carmeB0222
MELO3C006036	CsaV3_3G008170	Cucumber (Chinese Long) v3	cucmeB236

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C006036	Watermelon (97103) v2	mewmbB421
MELO3C006036	Watermelon (97103) v2	mewmbB439
MELO3C006036	Wax gourd	mewgoB523
MELO3C006036	Wax gourd	mewgoB550
MELO3C006036	Melon (DHL92) v3.5.1	memeB018
MELO3C006036	Melon (DHL92) v3.5.1	memeB150
MELO3C006036	Melon (DHL92) v3.5.1	memeB151
MELO3C006036	Cucumber (Gy14) v1	cgymeB139
MELO3C006036	Cucurbita maxima (Rimu)	cmameB766
MELO3C006036	Cucurbita maxima (Rimu)	cmameB770
MELO3C006036	Cucurbita moschata (Rifu)	cmomeB230
MELO3C006036	Wild cucumber (PI 183967)	cpimeB291
MELO3C006036	Wild cucumber (PI 183967)	cpimeB399
MELO3C006036	Cucumber (Chinese Long) v2	cumeB297
MELO3C006036	Cucumber (Chinese Long) v2	cumeB402
MELO3C006036	Watermelon (Charleston Gray)	mewcgB420
MELO3C006036	Watermelon (Charleston Gray)	mewcgB430
MELO3C006036	Watermelon (97103) v1	mewmB478
MELO3C006036	Watermelon (97103) v1	mewmB466
MELO3C006036	Cucurbita pepo (Zucchini)	cpemeB585
MELO3C006036	Cucurbita pepo (Zucchini)	cpemeB698
MELO3C006036	Bottle gourd (USVL1VR-Ls)	lsimeB031
MELO3C006036	Cucumber (Gy14) v2	cgybmeB252
MELO3C006036	Cucumber (Gy14) v2	cgybmeB349
MELO3C006036	Silver-seed gourd	carmeB0968
MELO3C006036	Cucumber (Chinese Long) v3	cucmeB297
MELO3C006036	Cucumber (Chinese Long) v3	cucmeB411