MELO3C005212 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C005212
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	31-kDa RNA binding protein
Location	chr9 : 17484851 .. 17485525 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCCCTTCTCCCTCACTTTGTTTCCTTCTAAAATTCGGTACCAGCAGCTTTCTTCTACTGTTCCGCTTCTCCCTTCTCACTCACTCGTTTCCTTCTATTTTGACCATACTCTATTTCCTTCTAAAATCCGCCATGGTGGACCTCAAAACCGCATAGACTGAGAAATTCTGGTACTGGCGATTGGGATACAGCGAGGAATTTGAGGGGGTGTTTGGTAGATCTAGAGAAAGGAGGAGGAGAAGGGATTAGGAAGAGATGGAGGCGGCGGCGGTGGTACTTCAGAATGAGAGCGAGAAAGAGAAAGGGTTCTTCTTTGTTGATTGGCAGGATGTTGAAGAAACTGAAAATTCCAAGCTTGAGGAAGCTTTTGAGGCAGCAATGGCGACTGGTGAATACTATGAAATGCTTGAAGAATTATCATCATCAGGAATTTCCCCCAAACTTATTCACTTCCAAGCTTTAGCTAATTAGTAATCAATATGGTTTGGTTTTCTTCTTAATTGCTCTTATAATTGTTGTGTTTGATGTGATTTCCCACTGCTTTTGAAATTTGAATGTTAATTAATAATCAACAACTGAAGCTATTGACGTGGAGTTGAGAGATGACTTGGAGCGTTTGAAAAAGATCAGGTGATTCATATTTGCAATTATATGTTTTTGCTTTGGTTGAGCAC

mRNA sequence

TCTCCCTTCTCCCTCACTTTGTTTCCTTCTAAAATTCGGTACCAGCAGCTTTCTTCTACTGTTCCGCTTCTCCCTTCTCACTCACTCGTTTCCTTCTATTTTGACCATACTCTATTTCCTTCTAAAATCCGCCATGGTGGACCTCAAAACCGCATAGACTGAGAAATTCTGGTACTGGCGATTGGGATACAGCGAGGAATTTGAGGGGGTGTTTGGTAGATCTAGAGAAAGGAGGAGGAGAAGGGATTAGGAAGAGATGGAGGCGGCGGCGGTGGTACTTCAGAATGAGAGCGAGAAAGAGAAAGGGTTCTTCTTTGTTGATTGGCAGGATGTTGAAGAAACTGAAAATTCCAAGCTTGAGGAAGCTTTTGAGGCAGCAATGGCGACTGGTGAATACTATGAAATGCTTGAAGAATTATCATCATCAGGAATTTCCCCCAAACTTATTCACTTCCAAGCTTTAGCTAATTAGTAATCAATATGGTTTGGTTTTCTTCTTAATTGCTCTTATAATTGTTGTGTTTGATGTGATTTCCCACTGCTTTTGAAATTTGAATGTTAATTAATAATCAACAACTGAAGCTATTGACGTGGAGTTGAGAGATGACTTGGAGCGTTTGAAAAAGATCAGGTGATTCATATTTGCAATTATATGTTTTTGCTTTGGTTGAGCAC

Coding sequence (CDS)

ATGGAGGCGGCGGCGGTGGTACTTCAGAATGAGAGCGAGAAAGAGAAAGGGTTCTTCTTTGTTGATTGGCAGGATGTTGAAGAAACTGAAAATTCCAAGCTTGAGGAAGCTTTTGAGGCAGCAATGGCGACTGGTGAATACTATGAAATGCTTGAAGAATTATCATCATCAGGAATTTCCCCCAAACTTATTCACTTCCAAGCTTTAGCTAATTAG

Protein sequence

MEAAAVVLQNESEKEKGFFFVDWQDVEETENSKLEEAFEAAMATGEYYEMLEELSSSGISPKLIHFQALAN*

Homology

[Close]

BLAST of MELO3C005212 vs. TrEMBL
Match: A0A0A0KLL6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G114610 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.6e-07
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 1


Query: 13 EKEKGFFF-VDWQDVEETENSKLEEAFEAAMATGEYYEMLE 53
          + EKGFFF VD +DVEETENSKLEEAFEA MATGEY E ++
Sbjct: 29 QNEKGFFFFVDCEDVEETENSKLEEAFEAVMATGEYNERID 69

[Close]

BLAST of MELO3C005212 vs. NCBI nr
Match: gi|700194587|gb|KGN49764.1| (hypothetical protein Csa_5G114610 [Cucumis sativus])

HSP 1 Score: 62.4 bits (150), Expect = 3.8e-07
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 1


Query: 13 EKEKGFFF-VDWQDVEETENSKLEEAFEAAMATGEYYEMLE 53
          + EKGFFF VD +DVEETENSKLEEAFEA MATGEY E ++
Sbjct: 29 QNEKGFFFFVDCEDVEETENSKLEEAFEAVMATGEYNERID 69

The following BLAST results are available for this feature:

BLAST of MELO3C005212 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KLL6_CUCSA	2.6e-07	75.61	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G114610 PE=4 SV=1	[more]

BLAST of MELO3C005212 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700194587\|gb\|KGN49764.1\|	3.8e-07	75.61	hypothetical protein Csa_5G114610 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU52991	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C005212T1	MELO3C005212T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU52991	MU52991	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C005212	CSPI05G02180	Wild cucumber (PI 183967)	cpimeB352
MELO3C005212	CsaV3_5G017420	Cucumber (Chinese Long) v3	cucmeB361

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C005212	Silver-seed gourd	carmeB0483
MELO3C005212	Silver-seed gourd	carmeB0821
MELO3C005212	Watermelon (97103) v2	mewmbB009
MELO3C005212	Wax gourd	mewgoB012
MELO3C005212	Cucumber (Gy14) v1	cgymeB610
MELO3C005212	Cucurbita maxima (Rimu)	cmameB252
MELO3C005212	Cucurbita maxima (Rimu)	cmameB635
MELO3C005212	Cucurbita moschata (Rifu)	cmomeB240
MELO3C005212	Cucurbita moschata (Rifu)	cmomeB625
MELO3C005212	Cucumber (Chinese Long) v2	cumeB362
MELO3C005212	Watermelon (Charleston Gray)	mewcgB019
MELO3C005212	Watermelon (97103) v1	mewmB030
MELO3C005212	Cucurbita pepo (Zucchini)	cpemeB157
MELO3C005212	Cucurbita pepo (Zucchini)	cpemeB359
MELO3C005212	Bottle gourd (USVL1VR-Ls)	lsimeB013
MELO3C005212	Cucumber (Gy14) v2	cgybmeB302