CSPI05G02180 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI05G02180
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr5 : 2905097 .. 2905267 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGCGGCGGCAATGGTAGTTCAGAATGAGAAAGGGTTCTTCTTCTTTGTCGATTGTGAGGATGTTGAAGAAACTGAGAATTCCAAGCTTGAGGAAGCTTTTGAGGCGGTAATGGCAACTGGTGAATACAATGAGAGGATCGATTGCGAAGGTATTGAAGAGATTTAG

mRNA sequence

ATGGAGGCGGCGGCAATGGTAGTTCAGAATGAGAAAGGGTTCTTCTTCTTTGTCGATTGTGAGGATGTTGAAGAAACTGAGAATTCCAAGCTTGAGGAAGCTTTTGAGGCGGTAATGGCAACTGGTGAATACAATGAGAGGATCGATTGCGAAGGTATTGAAGAGATTTAG

Coding sequence (CDS)

ATGGAGGCGGCGGCAATGGTAGTTCAGAATGAGAAAGGGTTCTTCTTCTTTGTCGATTGTGAGGATGTTGAAGAAACTGAGAATTCCAAGCTTGAGGAAGCTTTTGAGGCGGTAATGGCAACTGGTGAATACAATGAGAGGATCGATTGCGAAGGTATTGAAGAGATTTAG
Homology
[Close]
BLAST of CSPI05G02180 vs. TrEMBL
Match: A0A0A0KLL6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G114610 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 2.9e-17
Identity = 44/47 (93.62%), Postives = 46/47 (97.87%), Query Frame = 1 

Query: 8  VQNEKGFFFFVDCEDVEETENSKLEEAFEAVMATGEYNERIDCEGIE 55
          VQNEKGFFFFVDCEDVEETENSKLEEAFEAVMATGEYNERIDCE ++
Sbjct: 28 VQNEKGFFFFVDCEDVEETENSKLEEAFEAVMATGEYNERIDCEAVD 74

[Close]
BLAST of CSPI05G02180 vs. NCBI nr
Match: gi|700194587|gb|KGN49764.1| (hypothetical protein Csa_5G114610 [Cucumis sativus])

HSP 1 Score: 95.1 bits (235), Expect = 4.1e-17
Identity = 44/47 (93.62%), Postives = 46/47 (97.87%), Query Frame = 1 

Query: 8  VQNEKGFFFFVDCEDVEETENSKLEEAFEAVMATGEYNERIDCEGIE 55
          VQNEKGFFFFVDCEDVEETENSKLEEAFEAVMATGEYNERIDCE ++
Sbjct: 28 VQNEKGFFFFVDCEDVEETENSKLEEAFEAVMATGEYNERIDCEAVD 74

The following BLAST results are available for this feature:
BLAST of CSPI05G02180 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI05G02180 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KLL6_CUCSA2.9e-1793.62Uncharacterized protein OS=Cucumis sativus GN=Csa_5G114610 PE=4 SV=1[more]
BLAST of CSPI05G02180 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI05G02180 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700194587|gb|KGN49764.1|4.1e-1793.62hypothetical protein Csa_5G114610 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G02180.1CSPI05G02180.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI05G02180MELO3C005212Melon (DHL92) v3.5.1cpimeB352
CSPI05G02180CsaV3_5G017420Cucumber (Chinese Long) v3cpicucB287
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI05G02180Cucumber (Gy14) v1cgycpiB555
CSPI05G02180Cucurbita maxima (Rimu)cmacpiB307
CSPI05G02180Cucurbita maxima (Rimu)cmacpiB734
CSPI05G02180Cucurbita moschata (Rifu)cmocpiB299
CSPI05G02180Cucurbita moschata (Rifu)cmocpiB727
CSPI05G02180Cucumber (Chinese Long) v2cpicuB240
CSPI05G02180Watermelon (Charleston Gray)cpiwcgB380
CSPI05G02180Watermelon (97103) v1cpiwmB417
CSPI05G02180Cucurbita pepo (Zucchini)cpecpiB180
CSPI05G02180Cucurbita pepo (Zucchini)cpecpiB418
CSPI05G02180Bottle gourd (USVL1VR-Ls)cpilsiB323
CSPI05G02180Melon (DHL92) v3.6.1cpimedB342
CSPI05G02180Cucumber (Gy14) v2cgybcpiB227
CSPI05G02180Silver-seed gourdcarcpiB0516
CSPI05G02180Silver-seed gourdcarcpiB0862
CSPI05G02180Watermelon (97103) v2cpiwmbB350
CSPI05G02180Wax gourdcpiwgoB441