MELO3C004738.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C004738.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionATP-dependent DNA helicase Q-like 1
Locationchr12 : 11364748 .. 11364927 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCGGACACGACTTGGAATTGGAGAGAGCTCGATTGTTAAGCTTGGCAGCGAAACTCGGTTTCGATGAAGAATCGGCTGAGGCTTGCTTGGACCGCATAATCAACCTATATGGTAATTTCTTCCATTTCCACCCCATTCCAGACCCTAAAATTGCACTTTCAGTTTCATCTATATAA

mRNA sequence

ATGGGCGGACACGACTTGGAATTGGAGAGAGCTCGATTGTTAAGCTTGGCAGCGAAACTCGGTTTCGATGAAGAATCGGCTGAGGCTTGCTTGGACCGCATAATCAACCTATATGGTAATTTCTTCCATTTCCACCCCATTCCAGACCCTAAAATTGCACTTTCAGTTTCATCTATATAA

Coding sequence (CDS)

ATGGGCGGACACGACTTGGAATTGGAGAGAGCTCGATTGTTAAGCTTGGCAGCGAAACTCGGTTTCGATGAAGAATCGGCTGAGGCTTGCTTGGACCGCATAATCAACCTATATGGTAATTTCTTCCATTTCCACCCCATTCCAGACCCTAAAATTGCACTTTCAGTTTCATCTATATAA

Protein sequence

MGGHDLELERARLLSLAAKLGFDEESAEACLDRIINLYGNFFHFHPIPDPKIALSVSSI
Homology
[Close]
BLAST of MELO3C004738.2 vs. NCBI nr
Match: XP_008453778.1 (PREDICTED: ATP-dependent DNA helicase Q-like 1 [Cucumis melo])

HSP 1 Score: 79.0 bits (193), Expect = 6.2e-12
Identity = 37/40 (92.50%), Postives = 40/40 (100.00%), Query Frame = 0 

Query: 1  MGGHDLELERARLLSLAAKLGFDEESAEACLDRIINLYGN 41
          MGGHDL+LERARLLSLAA+LGFDEESAEACLDRIINLYG+
Sbjct: 1  MGGHDLDLERARLLSLAAELGFDEESAEACLDRIINLYGD 40

[Close]
BLAST of MELO3C004738.2 vs. NCBI nr
Match: XP_022999189.1 (ATP-dependent DNA helicase Q-like 1 [Cucurbita maxima])

HSP 1 Score: 79.0 bits (193), Expect = 6.2e-12
Identity = 37/40 (92.50%), Postives = 40/40 (100.00%), Query Frame = 0 

Query: 1  MGGHDLELERARLLSLAAKLGFDEESAEACLDRIINLYGN 41
          MGGHDLELERARLLSLAA+LGFDEESAEACLDR+INLYG+
Sbjct: 1  MGGHDLELERARLLSLAAELGFDEESAEACLDRMINLYGD 40

[Close]
BLAST of MELO3C004738.2 vs. NCBI nr
Match: XP_011648853.1 (PREDICTED: ATP-dependent DNA helicase Q-like 1 [Cucumis sativus] >KGN60981.1 hypothetical protein Csa_2G033360 [Cucumis sativus])

HSP 1 Score: 77.8 bits (190), Expect = 1.4e-11
Identity = 36/40 (90.00%), Postives = 40/40 (100.00%), Query Frame = 0 

Query: 1  MGGHDLELERARLLSLAAKLGFDEESAEACLDRIINLYGN 41
          MGGHDLELERARLLSLAA+LGFDE+SA+ACLDRIINLYG+
Sbjct: 1  MGGHDLELERARLLSLAAELGFDEQSAQACLDRIINLYGD 40

[Close]
BLAST of MELO3C004738.2 vs. NCBI nr
Match: XP_022946040.1 (ATP-dependent DNA helicase Q-like 1 [Cucurbita moschata])

HSP 1 Score: 77.0 bits (188), Expect = 2.3e-11
Identity = 36/40 (90.00%), Postives = 40/40 (100.00%), Query Frame = 0 

Query: 1  MGGHDLELERARLLSLAAKLGFDEESAEACLDRIINLYGN 41
          MGGHDLELERARLLSLAA+LGFDEESAEACL+R+INLYG+
Sbjct: 1  MGGHDLELERARLLSLAAELGFDEESAEACLNRMINLYGD 40

[Close]
BLAST of MELO3C004738.2 vs. NCBI nr
Match: XP_023545259.1 (ATP-dependent DNA helicase Q-like 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 76.3 bits (186), Expect = 4.0e-11
Identity = 36/40 (90.00%), Postives = 39/40 (97.50%), Query Frame = 0 

Query: 1  MGGHDLELERARLLSLAAKLGFDEESAEACLDRIINLYGN 41
          MGGHDLELERARLLSLAA+LGFDE SAEACLDR+INLYG+
Sbjct: 1  MGGHDLELERARLLSLAAELGFDEGSAEACLDRMINLYGD 40

[Close]
BLAST of MELO3C004738.2 vs. TAIR10
Match: AT3G05740.1 (RECQ helicase l1)

HSP 1 Score: 59.3 bits (142), Expect = 9.2e-10
Identity = 26/40 (65.00%), Postives = 33/40 (82.50%), Query Frame = 0 

Query: 1  MGGHDLELERARLLSLAAKLGFDEESAEACLDRIINLYGN 41
          M   DLELE+ RL+SLA KLGFDE+SA+ CLDR ++LYG+
Sbjct: 1  MKDQDLELEKVRLISLATKLGFDEDSAKKCLDRFVDLYGD 40

[Close]
BLAST of MELO3C004738.2 vs. Swiss-Prot
Match: sp|Q9FT74|RQL1_ARATH (ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana OX=3702 GN=RECQL1 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.7e-08
Identity = 26/40 (65.00%), Postives = 33/40 (82.50%), Query Frame = 0 

Query: 1  MGGHDLELERARLLSLAAKLGFDEESAEACLDRIINLYGN 41
          M   DLELE+ RL+SLA KLGFDE+SA+ CLDR ++LYG+
Sbjct: 1  MKDQDLELEKVRLISLATKLGFDEDSAKKCLDRFVDLYGD 40

[Close]
BLAST of MELO3C004738.2 vs. TrEMBL
Match: tr|A0A1S3BX65|A0A1S3BX65_CUCME (ATP-dependent DNA helicase OS=Cucumis melo OX=3656 GN=LOC103494405 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 4.1e-12
Identity = 37/40 (92.50%), Postives = 40/40 (100.00%), Query Frame = 0 

Query: 1  MGGHDLELERARLLSLAAKLGFDEESAEACLDRIINLYGN 41
          MGGHDL+LERARLLSLAA+LGFDEESAEACLDRIINLYG+
Sbjct: 1  MGGHDLDLERARLLSLAAELGFDEESAEACLDRIINLYGD 40

[Close]
BLAST of MELO3C004738.2 vs. TrEMBL
Match: tr|A0A0A0LLZ4|A0A0A0LLZ4_CUCSA (ATP-dependent DNA helicase OS=Cucumis sativus OX=3659 GN=Csa_2G033360 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 9.1e-12
Identity = 36/40 (90.00%), Postives = 40/40 (100.00%), Query Frame = 0 

Query: 1  MGGHDLELERARLLSLAAKLGFDEESAEACLDRIINLYGN 41
          MGGHDLELERARLLSLAA+LGFDE+SA+ACLDRIINLYG+
Sbjct: 1  MGGHDLELERARLLSLAAELGFDEQSAQACLDRIINLYGD 40

[Close]
BLAST of MELO3C004738.2 vs. TrEMBL
Match: tr|A0A2P6R7G6|A0A2P6R7G6_ROSCH (ATP-dependent DNA helicase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g0456831 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.7e-08
Identity = 29/39 (74.36%), Postives = 34/39 (87.18%), Query Frame = 0 

Query: 1  MGGHDLELERARLLSLAAKLGFDEESAEACLDRIINLYG 40
          MGGHDLE+E+ARLLSLA   GFDEESA  CLDR+++LYG
Sbjct: 1  MGGHDLEMEKARLLSLALNFGFDEESANKCLDRMVDLYG 39

[Close]
BLAST of MELO3C004738.2 vs. TrEMBL
Match: tr|A0A2K2AAE4|A0A2K2AAE4_POPTR (ATP-dependent DNA helicase OS=Populus trichocarpa OX=3694 GN=POPTR_005G019800v3 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.7e-08
Identity = 30/40 (75.00%), Postives = 34/40 (85.00%), Query Frame = 0 

Query: 1  MGGHDLELERARLLSLAAKLGFDEESAEACLDRIINLYGN 41
          MGG DLELERAR LSLA + GFDEESA  CLDR+I+LYG+
Sbjct: 1  MGGRDLELERARFLSLALEFGFDEESANKCLDRLISLYGD 40

[Close]
BLAST of MELO3C004738.2 vs. TrEMBL
Match: tr|A0A2K2AAC3|A0A2K2AAC3_POPTR (ATP-dependent DNA helicase OS=Populus trichocarpa OX=3694 GN=POPTR_005G019800v3 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.7e-08
Identity = 30/40 (75.00%), Postives = 34/40 (85.00%), Query Frame = 0 

Query: 1  MGGHDLELERARLLSLAAKLGFDEESAEACLDRIINLYGN 41
          MGG DLELERAR LSLA + GFDEESA  CLDR+I+LYG+
Sbjct: 1  MGGRDLELERARFLSLALEFGFDEESANKCLDRLISLYGD 40

The following BLAST results are available for this feature:
BLAST of MELO3C004738.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008453778.16.2e-1292.50PREDICTED: ATP-dependent DNA helicase Q-like 1 [Cucumis melo][more]
XP_022999189.16.2e-1292.50ATP-dependent DNA helicase Q-like 1 [Cucurbita maxima][more]
XP_011648853.11.4e-1190.00PREDICTED: ATP-dependent DNA helicase Q-like 1 [Cucumis sativus] >KGN60981.1 hyp... [more]
XP_022946040.12.3e-1190.00ATP-dependent DNA helicase Q-like 1 [Cucurbita moschata][more]
XP_023545259.14.0e-1190.00ATP-dependent DNA helicase Q-like 1 [Cucurbita pepo subsp. pepo][more]
BLAST of MELO3C004738.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G05740.19.2e-1065.00RECQ helicase l1[more]
BLAST of MELO3C004738.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9FT74|RQL1_ARATH1.7e-0865.00ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana OX=3702 GN=RECQL1 PE... [more]
BLAST of MELO3C004738.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BX65|A0A1S3BX65_CUCME4.1e-1292.50ATP-dependent DNA helicase OS=Cucumis melo OX=3656 GN=LOC103494405 PE=3 SV=1[more]
tr|A0A0A0LLZ4|A0A0A0LLZ4_CUCSA9.1e-1290.00ATP-dependent DNA helicase OS=Cucumis sativus OX=3659 GN=Csa_2G033360 PE=3 SV=1[more]
tr|A0A2P6R7G6|A0A2P6R7G6_ROSCH2.7e-0874.36ATP-dependent DNA helicase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g0456831 P... [more]
tr|A0A2K2AAE4|A0A2K2AAE4_POPTR4.7e-0875.00ATP-dependent DNA helicase OS=Populus trichocarpa OX=3694 GN=POPTR_005G019800v3 ... [more]
tr|A0A2K2AAC3|A0A2K2AAC3_POPTR4.7e-0875.00ATP-dependent DNA helicase OS=Populus trichocarpa OX=3694 GN=POPTR_005G019800v3 ... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006310 DNA recombination
cellular_component GO:0005575 cellular_component
molecular_function GO:0005524 ATP binding
molecular_function GO:0008026 ATP-dependent helicase activity
molecular_function GO:0004386 helicase activity
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C004738.2.1MELO3C004738.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C004738.2Wax gourdmedwgoB176
MELO3C004738.2Cucumber (Gy14) v2cgybmedB009
MELO3C004738.2Cucumber (Gy14) v1cgymedB361
MELO3C004738.2Cucurbita maxima (Rimu)cmamedB215
MELO3C004738.2Cucurbita moschata (Rifu)cmomedB203
MELO3C004738.2Wild cucumber (PI 183967)cpimedB011
MELO3C004738.2Cucumber (Chinese Long) v2cumedB010
MELO3C004738.2Bottle gourd (USVL1VR-Ls)lsimedB255
MELO3C004738.2Watermelon (Charleston Gray)medwcgB133
MELO3C004738.2Cucumber (Chinese Long) v3cucmedB009
MELO3C004738.2Watermelon (97103) v2medwmbB132