MELO3C004369 (gene) Melon (DHL92) v3.5.1

NameMELO3C004369
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionCoffea canephora DH200=94 genomic scaffold, scaffold_34
Locationchr5 : 25960476 .. 25961440 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGATGATTCTCCTTTTCCATTAGGTATATATATTGTCTCTTCTTGATCTCTTTAGGGTTTTTCTTTTTCTAAATATCATCTATATTTCTTTACATTTTTTTATACAAATAAAGTGATGTTTTTGAGGTAAATGATATGTTTTTTTTTTCAGATAAAGTATGTGAAGAAGTGAACTGTGGAAAAGGAAACTGCACACCCGGCGTGGAACATCTTCCATTCGGGTTCTCATGCGAATGTGATCCAGGTTGGAAGCGAACTCGCGACAACGACGACGATCTCGTCTTTCTTCCTTGCGTCATCCCTAACTGTAATCTTTCTTTCTCTCTTTTTCTCTCTGTTTATTGAAAACGATGATCCAATTCAATTAGTCAACTGATATATCGTCTACGTTTCTTGTTGATGTTTCCGTAGGTACTCTCAACTATGGCTGCCAGCCAGCGCCACCGCCGGTGCCGGAGAAACCTGTTCCGAAAAACTCATCTTTCTTCAACCGTAAGTCATTCTCAGAGATATAAATTTTGAGTGAACTTTTCTTGGTTGATTTTTCTCACAATTTGTAGCAACATCCTTGCATTTCTCATCCTTAAAATCAATCAATCTCATCATTTTTATGATTGGTGTTATTGTAGCTTGCTATTGGGCATATTGTGGAGAAGGAGATTGTGTGAGAAACAAAACCTATATACACACATGTGAATGCAGACCTGGCTTCTACAATCTCCTCAACATTTCTACCTTCCCTTGCTATACTGATTGTAAGATTATCACCCTTAGCTTTTTTCTTTCCCTTTTTTACCGACTAATTTTAAGTTACCTCCGTTACGACGACTTATCTTTGTAATCTTTATAGGTACAATAGGATCTGATTGTGCAAAGCTTGGAATTAAAGTTGCAAATGTGAATGGTACTGATAATAATGGAAGTGGTTCTGGAAATGGCACTGGACATGGTAACATATGA

mRNA sequence

ATGGCAGATGATTCTCCTTTTCCATTAGATAAAGTATGTGAAGAAGTGAACTGTGGAAAAGGAAACTGCACACCCGGCGTGGAACATCTTCCATTCGGGTTCTCATGCGAATGTGATCCAGGTTGGAAGCGAACTCGCGACAACGACGACGATCTCGTCTTTCTTCCTTGCGTCATCCCTAACTGTACTCTCAACTATGGCTGCCAGCCAGCGCCACCGCCGGTGCCGGAGAAACCTGTTCCGAAAAACTCATCTTTCTTCAACCGTACAATAGGATCTGATTGTGCAAAGCTTGGAATTAAAGTTGCAAATGTGAATGGTACTGATAATAATGGAAGTGGTTCTGGAAATGGCACTGGACATGGTAACATATGA

Coding sequence (CDS)

ATGGCAGATGATTCTCCTTTTCCATTAGATAAAGTATGTGAAGAAGTGAACTGTGGAAAAGGAAACTGCACACCCGGCGTGGAACATCTTCCATTCGGGTTCTCATGCGAATGTGATCCAGGTTGGAAGCGAACTCGCGACAACGACGACGATCTCGTCTTTCTTCCTTGCGTCATCCCTAACTGTACTCTCAACTATGGCTGCCAGCCAGCGCCACCGCCGGTGCCGGAGAAACCTGTTCCGAAAAACTCATCTTTCTTCAACCGTACAATAGGATCTGATTGTGCAAAGCTTGGAATTAAAGTTGCAAATGTGAATGGTACTGATAATAATGGAAGTGGTTCTGGAAATGGCACTGGACATGGTAACATATGA

Protein sequence

MADDSPFPLDKVCEEVNCGKGNCTPGVEHLPFGFSCECDPGWKRTRDNDDDLVFLPCVIPNCTLNYGCQPAPPPVPEKPVPKNSSFFNRTIGSDCAKLGIKVANVNGTDNNGSGSGNGTGHGNI*
BLAST of MELO3C004369 vs. TrEMBL
Match: A0A0A0LLE2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G011540 PE=4 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 4.8e-57
Identity = 114/165 (69.09%), Postives = 116/165 (70.30%), Query Frame = 1

Query: 1   MADDSPFPLDKVCEEVNCGKGNCTPGVEHLPFGFSCECDPGWKRTRDNDDDLVFLPCVIP 60
           +ADD PFP DKVCEEVNCGKGNCTPGVEHLPFGFSCECDPGWKRTRDNDDDLVFLPCVIP
Sbjct: 26  IADDPPFPFDKVCEEVNCGKGNCTPGVEHLPFGFSCECDPGWKRTRDNDDDLVFLPCVIP 85

Query: 61  NCTLNYGCQPAPPPVPEKPVPKNSSFF---------------NRTIGSD----------- 120
           NCTL+YGCQPAPPPVPEKPVPKNSSFF               NRT               
Sbjct: 86  NCTLDYGCQPAPPPVPEKPVPKNSSFFNPCYWAYCGQGDCVQNRTYIHTCECQSGYYNLL 145

Query: 121 ----------------CAKLGIKVANVNGTDNNGSGSGNGTGHGN 124
                           CAKLGIKVANVNGTD NGSGSGNGTGHGN
Sbjct: 146 NISTFPCYSDCTIGSDCAKLGIKVANVNGTD-NGSGSGNGTGHGN 189

BLAST of MELO3C004369 vs. TrEMBL
Match: A0A072VNN2_MEDTR (MtN26 OS=Medicago truncatula GN=MTR_1g080990 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 6.7e-35
Identity = 72/117 (61.54%), Postives = 86/117 (73.50%), Query Frame = 1

Query: 9   LDKVCEEVNCGKGNCTPGVEHLPFGFSCECDPGWKRTRDNDDDLV---FLPCVIPNCTLN 68
           L+KVCEEV CGKGNC     + P  F CECD GWKRT+D DDD+    FLPCVIP C+LN
Sbjct: 31  LEKVCEEVECGKGNCVVNSSY-PLNFVCECDSGWKRTQDEDDDIYATSFLPCVIPQCSLN 90

Query: 69  YGCQPAPPPVPEKPVPKNSSFFNRTIGSDCAKLGIKVANVNG-TDNNGSGSGNGTGH 122
           YGCQPAPPPVPEK +P+N S F+RT+GSDC++LGIKV+N  G  D++ S    G  H
Sbjct: 91  YGCQPAPPPVPEKTLPRNISAFDRTLGSDCSRLGIKVSNSTGDVDSHASSIFGGRFH 146

BLAST of MELO3C004369 vs. TrEMBL
Match: A0A072VN18_MEDTR (MtN26 OS=Medicago truncatula GN=MTR_1g080990 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 5.7e-26
Identity = 56/92 (60.87%), Postives = 66/92 (71.74%), Query Frame = 1

Query: 9   LDKVCEEVNCGKGNCTPGVEHLPFGFSCECDPGWKRTRDNDDDLV---FLPCVIPNCTLN 68
           L+KVCEEV CGKGNC     + P  F CECD GWKRT+D DDD+    FLPCVIP C+LN
Sbjct: 31  LEKVCEEVECGKGNCVVNSSY-PLNFVCECDSGWKRTQDEDDDIYATSFLPCVIPQCSLN 90

Query: 69  YGCQPAPPPVPEKPVPKNSSFFNRTIGSDCAK 98
           YGCQPAPPPVPEK +P+N S F+    + C +
Sbjct: 91  YGCQPAPPPVPEKTLPRNISAFDPCYWAYCGE 121

BLAST of MELO3C004369 vs. TrEMBL
Match: A0A072VN18_MEDTR (MtN26 OS=Medicago truncatula GN=MTR_1g080990 PE=4 SV=1)

HSP 1 Score: 40.0 bits (92), Expect = 2.4e+00
Identity = 41/158 (25.95%), Postives = 56/158 (35.44%), Query Frame = 1

Query: 9   LDKVCEEVNCGKGNCTPGVEH---------------------------LP-------FGF 68
           L+KVCEEV CGKGNC     +                           LP         +
Sbjct: 31  LEKVCEEVECGKGNCVVNSSYPLNFVCECDSGWKRTQDEDDDIYATSFLPCVIPQCSLNY 90

Query: 69  SCECDPG------WKRTRDNDDDLVFLPCVIPNCTLN----YGCQPAPPPVPEKPVPKNS 122
            C+  P         R     D   +  C    CT N    + C+  P       +    
Sbjct: 91  GCQPAPPPVPEKTLPRNISAFDPCYWAYCGEGQCTKNKTHTHRCECNPNYYNLLNISVFP 150


HSP 2 Score: 125.2 bits (313), Expect = 5.7e-26
Identity = 56/92 (60.87%), Postives = 66/92 (71.74%), Query Frame = 1

Query: 9   LDKVCEEVNCGKGNCTPGVEHLPFGFSCECDPGWKRTRDNDDDLV---FLPCVIPNCTLN 68
           L+KVCEEV CGKGNC     + P  F CECD GWKRT+D DDD+    FLPCVIP C+LN
Sbjct: 31  LEKVCEEVECGKGNCVVNSSY-PLNFVCECDSGWKRTQDEDDDIYATSFLPCVIPQCSLN 90

Query: 69  YGCQPAPPPVPEKPVPKNSSFFNRTIGSDCAK 98
           YGCQPAPPPVPEK +P+N S F+    + C +
Sbjct: 91  YGCQPAPPPVPEKTLPRNISAFDPCYWAYCGE 121

BLAST of MELO3C004369 vs. TrEMBL
Match: I3S2R8_MEDTR (Uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 39.3 bits (90), Expect = 4.1e+00
Identity = 41/158 (25.95%), Postives = 55/158 (34.81%), Query Frame = 1

Query: 9   LDKVCEEVNCGKGNCTPGVEH---------------------------LP-------FGF 68
           L+KVCEEV CGKGNC     +                           LP         +
Sbjct: 31  LEKVCEEVECGKGNCVVNSSYPLNFVCECDSGWKRTQDEDDDIYATSFLPCVIPQCSLNY 90

Query: 69  SCECDPG------WKRTRDNDDDLVFLPCVIPNCTLN----YGCQPAPPPVPEKPVPKNS 122
            C+  P         R     D   +  C    CT N    + C+  P       +    
Sbjct: 91  GCQPAPPPVPEKTLPRNISAFDPCYWAYCGEGQCTKNKTHTHRCECNPNYYNLLNISVFP 150


HSP 2 Score: 125.2 bits (313), Expect = 5.7e-26
Identity = 56/92 (60.87%), Postives = 66/92 (71.74%), Query Frame = 1

Query: 9   LDKVCEEVNCGKGNCTPGVEHLPFGFSCECDPGWKRTRDNDDDLV---FLPCVIPNCTLN 68
           L+KVCEEV CGKGNC     + P  F CECD GWKRT+D DDD+    FLPCVIP C+LN
Sbjct: 31  LEKVCEEVECGKGNCVVNSSY-PLNFVCECDSGWKRTQDEDDDIYATSFLPCVIPQCSLN 90

Query: 69  YGCQPAPPPVPEKPVPKNSSFFNRTIGSDCAK 98
           YGCQPAPPPVPEK +P+N S F+    + C +
Sbjct: 91  YGCQPAPPPVPEKTLPRNISAFDPCYWAYCGE 121

BLAST of MELO3C004369 vs. TAIR10
Match: AT4G14746.1 (AT4G14746.1 EGF-like (InterPro:IPR006210))

HSP 1 Score: 76.3 bits (186), Expect = 1.5e-14
Identity = 37/88 (42.05%), Postives = 47/88 (53.41%), Query Frame = 1

Query: 10  DKVCEEVNCGKGNCTPGVEHLPFGFSCECDPGWKRTRDNDDDLVFLPCVIPNCTLNYGCQ 69
           D +C+EV CGKG C     +  F + CEC+ GW   +  D  L FLPC+ PNCT +  C 
Sbjct: 36  DNICKEVECGKGKCK-APSNTTFMYECECEDGW---KQFDQHLKFLPCITPNCTFDLTCG 95

Query: 70  PAPPPVPEKPVPKN--SSFFNRTIGSDC 96
            A  P   KP PK+  +SFF+     DC
Sbjct: 96  EAASPAQPKPPPKDNITSFFDPCQWMDC 119

BLAST of MELO3C004369 vs. NCBI nr
Match: gi|659071598|ref|XP_008460804.1| (PREDICTED: uncharacterized protein LOC103499567 [Cucumis melo])

HSP 1 Score: 278.9 bits (712), Expect = 4.4e-72
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 1

Query: 1   MADDSPFPLDKVCEEVNCGKGNCTPGVEHLPFGFSCECDPGWKRTRDNDDDLVFLPCVIP 60
           MADDSPFPLDKVCEEVNCGKGNCTPGVEHLPFGFSCECDPGWKRTRDNDDDLVFLPCVIP
Sbjct: 26  MADDSPFPLDKVCEEVNCGKGNCTPGVEHLPFGFSCECDPGWKRTRDNDDDLVFLPCVIP 85

Query: 61  NCTLNYGCQPAPPPVPEKPVPKNSSFFNRTIGSDCAKLGIKVANVNGTDNNGSGSGNGTG 120
           NCTLNYGCQPAPPPVPEKPVPKNSSFFNRTIGSDCAKLGIKVANVNGTDNNGSGSGNGTG
Sbjct: 86  NCTLNYGCQPAPPPVPEKPVPKNSSFFNRTIGSDCAKLGIKVANVNGTDNNGSGSGNGTG 145

Query: 121 HGNI 125
           HGNI
Sbjct: 146 HGNI 149

BLAST of MELO3C004369 vs. NCBI nr
Match: gi|449442915|ref|XP_004139226.1| (PREDICTED: uncharacterized protein LOC101221137 [Cucumis sativus])

HSP 1 Score: 228.4 bits (581), Expect = 6.9e-57
Identity = 114/165 (69.09%), Postives = 116/165 (70.30%), Query Frame = 1

Query: 1   MADDSPFPLDKVCEEVNCGKGNCTPGVEHLPFGFSCECDPGWKRTRDNDDDLVFLPCVIP 60
           +ADD PFP DKVCEEVNCGKGNCTPGVEHLPFGFSCECDPGWKRTRDNDDDLVFLPCVIP
Sbjct: 26  IADDPPFPFDKVCEEVNCGKGNCTPGVEHLPFGFSCECDPGWKRTRDNDDDLVFLPCVIP 85

Query: 61  NCTLNYGCQPAPPPVPEKPVPKNSSFF---------------NRTIGSD----------- 120
           NCTL+YGCQPAPPPVPEKPVPKNSSFF               NRT               
Sbjct: 86  NCTLDYGCQPAPPPVPEKPVPKNSSFFNPCYWAYCGQGDCVQNRTYIHTCECQSGYYNLL 145

Query: 121 ----------------CAKLGIKVANVNGTDNNGSGSGNGTGHGN 124
                           CAKLGIKVANVNGTD NGSGSGNGTGHGN
Sbjct: 146 NISTFPCYSDCTIGSDCAKLGIKVANVNGTD-NGSGSGNGTGHGN 189

BLAST of MELO3C004369 vs. NCBI nr
Match: gi|922403715|ref|XP_013468991.1| (MtN26 [Medicago truncatula])

HSP 1 Score: 154.8 bits (390), Expect = 9.7e-35
Identity = 72/117 (61.54%), Postives = 86/117 (73.50%), Query Frame = 1

Query: 9   LDKVCEEVNCGKGNCTPGVEHLPFGFSCECDPGWKRTRDNDDDLV---FLPCVIPNCTLN 68
           L+KVCEEV CGKGNC     + P  F CECD GWKRT+D DDD+    FLPCVIP C+LN
Sbjct: 31  LEKVCEEVECGKGNCVVNSSY-PLNFVCECDSGWKRTQDEDDDIYATSFLPCVIPQCSLN 90

Query: 69  YGCQPAPPPVPEKPVPKNSSFFNRTIGSDCAKLGIKVANVNG-TDNNGSGSGNGTGH 122
           YGCQPAPPPVPEK +P+N S F+RT+GSDC++LGIKV+N  G  D++ S    G  H
Sbjct: 91  YGCQPAPPPVPEKTLPRNISAFDRTLGSDCSRLGIKVSNSTGDVDSHASSIFGGRFH 146

BLAST of MELO3C004369 vs. NCBI nr
Match: gi|658020770|ref|XP_008345763.1| (PREDICTED: uncharacterized protein LOC103408711 [Malus domestica])

HSP 1 Score: 132.5 bits (332), Expect = 5.1e-28
Identity = 67/153 (43.79%), Postives = 81/153 (52.94%), Query Frame = 1

Query: 11  KVCEEVNCGKGNCTPGVEHLPFGFSCECDPGWKRTRDNDDDLVFLPCVIPNCTLNYGCQP 70
           ++C++V CGKG C   +   P GF+CECDP WKRTRD DDDL FLPCVIPNCTLNY CQP
Sbjct: 17  QICDQVECGKGTCKFDINE-PLGFTCECDPNWKRTRDGDDDLKFLPCVIPNCTLNYNCQP 76

Query: 71  APPPVPEKPVPKNSSFFNRTIGS------------------------------------- 120
           APPPVP+K VP+N S F     +                                     
Sbjct: 77  APPPVPQKEVPRNLSAFEPCYWAYCGEGNCVRNSTYHYTPICECNSGATNLLNVTLFPCY 136

BLAST of MELO3C004369 vs. NCBI nr
Match: gi|645222620|ref|XP_008218247.1| (PREDICTED: uncharacterized protein LOC103318622 [Prunus mume])

HSP 1 Score: 127.1 bits (318), Expect = 2.2e-26
Identity = 67/155 (43.23%), Postives = 80/155 (51.61%), Query Frame = 1

Query: 5   SPFPLDKVCEEVNCGKGNCTPGVEHLPFGFSCECDPGWKRTRDNDDDLVFLPCVIPNCTL 64
           +P   D+VC++V CG+G C   VE  P GF+CEC+ GWKRTRD DDDL FLPCVIPNCTL
Sbjct: 30  APSIADEVCKQVECGRGACKFDVED-PLGFTCECEAGWKRTRDGDDDLKFLPCVIPNCTL 89

Query: 65  NYGCQPAPPPVPEKPVPKNSSFFNR----------------------------------- 116
           +Y CQPAPPPVP K +P+N S F+                                    
Sbjct: 90  DYSCQPAPPPVPAKEIPRNLSAFDPCYWVYCGEGNCVKNETYAHTPICECKSGFSNLLNV 149

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LLE2_CUCSA4.8e-5769.09Uncharacterized protein OS=Cucumis sativus GN=Csa_2G011540 PE=4 SV=1[more]
A0A072VNN2_MEDTR6.7e-3561.54MtN26 OS=Medicago truncatula GN=MTR_1g080990 PE=4 SV=1[more]
A0A072VN18_MEDTR5.7e-2660.87MtN26 OS=Medicago truncatula GN=MTR_1g080990 PE=4 SV=1[more]
A0A072VN18_MEDTR2.4e+0025.95MtN26 OS=Medicago truncatula GN=MTR_1g080990 PE=4 SV=1[more]
I3S2R8_MEDTR4.1e+0025.95Uncharacterized protein OS=Medicago truncatula PE=2 SV=1[more]
Match NameE-valueIdentityDescription
AT4G14746.11.5e-1442.05 EGF-like (InterPro:IPR006210)[more]
Match NameE-valueIdentityDescription
gi|659071598|ref|XP_008460804.1|4.4e-72100.00PREDICTED: uncharacterized protein LOC103499567 [Cucumis melo][more]
gi|449442915|ref|XP_004139226.1|6.9e-5769.09PREDICTED: uncharacterized protein LOC101221137 [Cucumis sativus][more]
gi|922403715|ref|XP_013468991.1|9.7e-3561.54MtN26 [Medicago truncatula][more]
gi|658020770|ref|XP_008345763.1|5.1e-2843.79PREDICTED: uncharacterized protein LOC103408711 [Malus domestica][more]
gi|645222620|ref|XP_008218247.1|2.2e-2643.23PREDICTED: uncharacterized protein LOC103318622 [Prunus mume][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU59989melon EST collection version 4.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C004369T1MELO3C004369T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU59989MU59989transcribed_cluster


Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33881FAMILY NOT NAMEDcoord: 9..87
score: 9.1
NoneNo IPR availablePANTHERPTHR33881:SF1SUBFAMILY NOT NAMEDcoord: 9..87
score: 9.1

The following gene(s) are paralogous to this gene:

None