Cp4.1LG07g09490 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG07g09490
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	MtN26
Location	Cp4.1LG07 : 8614906 .. 8616448 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTATTATATTTATAGATAAAATATGCGATGAAGTGAACTGCGGAAAGGGGAATTGCACAACGGACGACGTATATCCGTTCTTCAAATGCGAGTGCGATTCCGGCTGGAAGCGTACTCGCGACTCCGACGACGATCTCACTTTTCTTCCTTGCGTCATCCCTAACTGTAAGCTTCTCTCTCTCTCTCTCTCTCTCTCTCAATCTCTCTCAATCTCTCTCAATCTCTCTCTCTCCGATTTCTCTGTTCGTCGAAAATGGCGATCGAAATCGAATCATCCAACTCTCTGTTTCTTCTCCTTGTTTTGAAGGTTCTCTTGACTATGGCTGCCAGTCGGCGCCGCCGCCGGTACCAGATAAGCCAGTTCCGAGGAACTCCTCCTTCTTCAATCGTAAGTCCGTTTCCGGCCAAGTTTCCCCAAATCTTTCTTCGTTGCTTTCCGTCGCAATTTCCGAAGAACAAAACCCTAATTTAAATATTTATTTATTTATTTATTGGATAACTTTATAAGTCGAATTTAAAATATAATTATTTTTGTTTATGATTATATGTATTTATTTTTATTTTATTTTATTCGATAATTAAAATTTTCAATTATTTAGTCTATTTTAGCTTTTAAAATTAAAATTTTAACATATATATAAATATGTTATTTTATTTTTATATTTTCTTTGATAACTATAATTTTAGTTTTTAATATTTGGATAATATTTCTTTTTTCTTTTGGTAATTGTTTTTAATATTTTAAAAATTCTAATTAAATTATTATTAATCCAATTTTTTTTTAATAATAAGGATTAAATTTTAAAAAATACTTAAAATATAATTAACGTTTTAATTATTTGTATACTTAATTCAATCTCTTAACCTGTCATTGCTAATATTAAATATTTTATTTTTAAATGTTTGGAGTTTTTAAATATACGAGACTGCCACCTTATATATGCTTAGGTTGACTTGATTATGTAAATTATTTATATTATTTTTAATATAATTAGCGTTTTAATTATTGTTTTTAATAAAAAAACGAAATTAATTAAGTCTTCAAAAAAAAAATATAATTGATTTTTTATTTTTTATTTTTATAAATTGTCTTGCAGCTTGCTATTGGGCCTATTGTGGAGAAGGCACGTGCGAGAAGAACAATACGTATGCACACACGTGTGAATGCAGCTCTGGCTTCTACAATCTCCTCAACATTTCTGCCTTCCCTTGCTATAGTGATTGTAAGATTCACTATTTATCCAATTTTTTTCAACTAAAAATATAATTTCAATTAAGTCGGGTAATATTTGGTCGTTAAATTCTTAAAATATTGTTTTCGAGTAATTTGTTCCTCGGTTGGAATAAACGTGTATTTTAATGTAATTTTGAAATTACGATCTAATTTTTGTTATTATATTATTTATAGGTACAATCGGGTCGGATTGTGCAAAACTTGGAATTAAAGTTGCTAACGTAAATTCAAGCGATAATGGAAGTGGGGGTTCTGGTACCGGACAAGGTACGATGTTCGATTATTTTTTTCGTTTTATATTTTGA

mRNA sequence

ATGTTTATTATATTTATAGATAAAATATGCGATGAAGTGAACTGCGGAAAGGGGAATTGCACAACGGACGACGTATATCCGTTCTTCAAATGCGAGTGCGATTCCGGCTGGAAGCGTACTCGCGACTCCGACGACGATCTCACTTTTCTTCCTTGCGTCATCCCTAACTGTTCTCTTGACTATGGCTGCCAGTCGGCGCCGCCGCCGGTACCAGATAAGCCAGTTCCGAGGAACTCCTCCTTCTTCAATCGTACAATCGGGTCGGATTGTGCAAAACTTGGAATTAAAGTTGCTAACGTAAATTCAAGCGATAATGGAAGTGGGGGTTCTGGTACCGGACAAGGTACGATGTTCGATTATTTTTTTCGTTTTATATTTTGA

Coding sequence (CDS)

ATGTTTATTATATTTATAGATAAAATATGCGATGAAGTGAACTGCGGAAAGGGGAATTGCACAACGGACGACGTATATCCGTTCTTCAAATGCGAGTGCGATTCCGGCTGGAAGCGTACTCGCGACTCCGACGACGATCTCACTTTTCTTCCTTGCGTCATCCCTAACTGTTCTCTTGACTATGGCTGCCAGTCGGCGCCGCCGCCGGTACCAGATAAGCCAGTTCCGAGGAACTCCTCCTTCTTCAATCGTACAATCGGGTCGGATTGTGCAAAACTTGGAATTAAAGTTGCTAACGTAAATTCAAGCGATAATGGAAGTGGGGGTTCTGGTACCGGACAAGGTACGATGTTCGATTATTTTTTTCGTTTTATATTTTGA

Protein sequence

MFIIFIDKICDEVNCGKGNCTTDDVYPFFKCECDSGWKRTRDSDDDLTFLPCVIPNCSLDYGCQSAPPPVPDKPVPRNSSFFNRTIGSDCAKLGIKVANVNSSDNGSGGSGTGQGTMFDYFFRFIF

Homology

[Close]

BLAST of Cp4.1LG07g09490 vs. TrEMBL
Match: A0A072VNN2_MEDTR (MtN26 OS=Medicago truncatula GN=MTR_1g080990 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 2.6e-34
Identity = 65/98 (66.33%), Postives = 81/98 (82.65%), Query Frame = 1


Query: 6   IDKICDEVNCGKGNCTTDDVYPF-FKCECDSGWKRTRDSDDDL---TFLPCVIPNCSLDY 65
           ++K+C+EV CGKGNC  +  YP  F CECDSGWKRT+D DDD+   +FLPCVIP CSL+Y
Sbjct: 31  LEKVCEEVECGKGNCVVNSSYPLNFVCECDSGWKRTQDEDDDIYATSFLPCVIPQCSLNY 90

Query: 66  GCQSAPPPVPDKPVPRNSSFFNRTIGSDCAKLGIKVAN 100
           GCQ APPPVP+K +PRN S F+RT+GSDC++LGIKV+N
Sbjct: 91  GCQPAPPPVPEKTLPRNISAFDRTLGSDCSRLGIKVSN 128

[Close]

BLAST of Cp4.1LG07g09490 vs. TrEMBL
Match: A0A0A0LLE2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G011540 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 7.5e-34
Identity = 81/154 (52.60%), Postives = 92/154 (59.74%), Query Frame = 1


Query: 7   DKICDEVNCGKGNCTTD-DVYPF-FKCECDSGWKRTRDSDDDLTFLPCVIPNCSLDYGCQ 66
           DK+C+EVNCGKGNCT   +  PF F CECD GWKRTRD+DDDL FLPCVIPNC+LDYGCQ
Sbjct: 35  DKVCEEVNCGKGNCTPGVEHLPFGFSCECDPGWKRTRDNDDDLVFLPCVIPNCTLDYGCQ 94

Query: 67  SAPPPVPDKPVPRNSSFFNRTIGSDCAK----------------------LGI------- 116
            APPPVP+KPVP+NSSFFN    + C +                      L I       
Sbjct: 95  PAPPPVPEKPVPKNSSFFNPCYWAYCGQGDCVQNRTYIHTCECQSGYYNLLNISTFPCYS 154

[Close]

BLAST of Cp4.1LG07g09490 vs. TrEMBL
Match: A0A118F892_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_026845 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 5.2e-27
Identity = 73/162 (45.06%), Postives = 84/162 (51.85%), Query Frame = 1


Query: 5   FIDKICDEVNCGKGNCTTDDVYPF-FKCECDSGWKRTR-DSDDDLTFLPCVIPNCSLDYG 64
           F DK+CDEVNCG+GNC+ D   PF F C+CD GWKRTR D++DDL FLPCVIPNCSLDY 
Sbjct: 43  FFDKLCDEVNCGRGNCSVDVAKPFNFVCQCDPGWKRTRSDNEDDLQFLPCVIPNCSLDYS 102

Query: 65  CQSAP---PPVPDK--------------------------------------PVPRNSSF 119
           C  AP   PPVPD                                        V     F
Sbjct: 103 CMPAPLPSPPVPDNYSSIFDPCYWTYCGEGRCTKNHTYTHTCECNPGYTNLMNVSHFPCF 162

[Close]

BLAST of Cp4.1LG07g09490 vs. TrEMBL
Match: A0A061F245_THECC (Slit protein C-product, putative OS=Theobroma cacao GN=TCM_026380 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.5e-26
Identity = 56/91 (61.54%), Postives = 66/91 (72.53%), Query Frame = 1


Query: 5   FIDKICDEVNCGKGNCTTDDVYPF-FKCECDSGWKRTRDSD--DDLTFLPCVIPNCSLDY 64
           F D++CDEV CGKG C  D  Y   + CECD+GWKRTRD D  DD+ FLPCVIPNC+LDY
Sbjct: 34  FYDRLCDEVECGKGTCKADISYRLNYICECDAGWKRTRDDDDNDDVRFLPCVIPNCTLDY 93

Query: 65  GCQSAPPPVPDKPVPRNSSFFNRTIGSDCAK 93
            CQ APPPVP+K VP NSSFF+    + C +
Sbjct: 94  SCQPAPPPVPEKEVPHNSSFFDPCYWTYCGE 124

[Close]

BLAST of Cp4.1LG07g09490 vs. TrEMBL
Match: A0A072VMH5_MEDTR (MtN26 OS=Medicago truncatula GN=MTR_1g080990 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.6e-26
Identity = 54/91 (59.34%), Postives = 68/91 (74.73%), Query Frame = 1


Query: 6   IDKICDEVNCGKGNCTTDDVYPF-FKCECDSGWKRTRDSDDDL---TFLPCVIPNCSLDY 65
           ++K+C+EV CGKGNC  +  YP  F CECDSGWKRT+D DDD+   +FLPCVIP CSL+Y
Sbjct: 31  LEKVCEEVECGKGNCVVNSSYPLNFVCECDSGWKRTQDEDDDIYATSFLPCVIPQCSLNY 90

Query: 66  GCQSAPPPVPDKPVPRNSSFFNRTIGSDCAK 93
           GCQ APPPVP+K +PRN S F+    + C +
Sbjct: 91  GCQPAPPPVPEKTLPRNISAFDPCYWAYCGE 121

[Close]

BLAST of Cp4.1LG07g09490 vs. TAIR10
Match: AT4G14746.1 (AT4G14746.1 EGF-like (InterPro:IPR006210))

HSP 1 Score: 78.6 bits (192), Expect = 3.1e-15
Identity = 38/93 (40.86%), Postives = 49/93 (52.69%), Query Frame = 1


Query: 1   MFIIFIDKICDEVNCGKGNCTTDDVYPF-FKCECDSGWKRTRDSDDDLTFLPCVIPNCSL 60
           +F    D IC EV CGKG C       F ++CEC+ GW   +  D  L FLPC+ PNC+ 
Sbjct: 30  LFAPVYDNICKEVECGKGKCKAPSNTTFMYECECEDGW---KQFDQHLKFLPCITPNCTF 89

Query: 61  DYGCQSAPPPVPDKPVPRN--SSFFNRTIGSDC 91
           D  C  A  P   KP P++  +SFF+     DC
Sbjct: 90  DLTCGEAASPAQPKPPPKDNITSFFDPCQWMDC 119

[Close]

BLAST of Cp4.1LG07g09490 vs. NCBI nr
Match: gi|659071598|ref|XP_008460804.1| (PREDICTED: uncharacterized protein LOC103499567 [Cucumis melo])

HSP 1 Score: 192.2 bits (487), Expect = 5.5e-46
Identity = 86/112 (76.79%), Postives = 96/112 (85.71%), Query Frame = 1


Query: 6   IDKICDEVNCGKGNCTTD-DVYPF-FKCECDSGWKRTRDSDDDLTFLPCVIPNCSLDYGC 65
           +DK+C+EVNCGKGNCT   +  PF F CECD GWKRTRD+DDDL FLPCVIPNC+L+YGC
Sbjct: 34  LDKVCEEVNCGKGNCTPGVEHLPFGFSCECDPGWKRTRDNDDDLVFLPCVIPNCTLNYGC 93

Query: 66  QSAPPPVPDKPVPRNSSFFNRTIGSDCAKLGIKVANVNSSDNGSGGSGTGQG 116
           Q APPPVP+KPVP+NSSFFNRTIGSDCAKLGIKVANVN +DN   GSG G G
Sbjct: 94  QPAPPPVPEKPVPKNSSFFNRTIGSDCAKLGIKVANVNGTDNNGSGSGNGTG 145

[Close]

BLAST of Cp4.1LG07g09490 vs. NCBI nr
Match: gi|922403715|ref|XP_013468991.1| (MtN26 [Medicago truncatula])

HSP 1 Score: 152.9 bits (385), Expect = 3.7e-34
Identity = 65/98 (66.33%), Postives = 81/98 (82.65%), Query Frame = 1


Query: 6   IDKICDEVNCGKGNCTTDDVYPF-FKCECDSGWKRTRDSDDDL---TFLPCVIPNCSLDY 65
           ++K+C+EV CGKGNC  +  YP  F CECDSGWKRT+D DDD+   +FLPCVIP CSL+Y
Sbjct: 31  LEKVCEEVECGKGNCVVNSSYPLNFVCECDSGWKRTQDEDDDIYATSFLPCVIPQCSLNY 90

Query: 66  GCQSAPPPVPDKPVPRNSSFFNRTIGSDCAKLGIKVAN 100
           GCQ APPPVP+K +PRN S F+RT+GSDC++LGIKV+N
Sbjct: 91  GCQPAPPPVPEKTLPRNISAFDRTLGSDCSRLGIKVSN 128

[Close]

BLAST of Cp4.1LG07g09490 vs. NCBI nr
Match: gi|449442915|ref|XP_004139226.1| (PREDICTED: uncharacterized protein LOC101221137 [Cucumis sativus])

HSP 1 Score: 151.4 bits (381), Expect = 1.1e-33
Identity = 81/154 (52.60%), Postives = 92/154 (59.74%), Query Frame = 1


Query: 7   DKICDEVNCGKGNCTTD-DVYPF-FKCECDSGWKRTRDSDDDLTFLPCVIPNCSLDYGCQ 66
           DK+C+EVNCGKGNCT   +  PF F CECD GWKRTRD+DDDL FLPCVIPNC+LDYGCQ
Sbjct: 35  DKVCEEVNCGKGNCTPGVEHLPFGFSCECDPGWKRTRDNDDDLVFLPCVIPNCTLDYGCQ 94

Query: 67  SAPPPVPDKPVPRNSSFFNRTIGSDCAK----------------------LGI------- 116
            APPPVP+KPVP+NSSFFN    + C +                      L I       
Sbjct: 95  PAPPPVPEKPVPKNSSFFNPCYWAYCGQGDCVQNRTYIHTCECQSGYYNLLNISTFPCYS 154

[Close]

BLAST of Cp4.1LG07g09490 vs. NCBI nr
Match: gi|976621634|gb|KVF18568.1| (hypothetical protein Ccrd_026845 [Cynara cardunculus var. scolymus])

HSP 1 Score: 128.6 bits (322), Expect = 7.5e-27
Identity = 73/162 (45.06%), Postives = 84/162 (51.85%), Query Frame = 1


Query: 5   FIDKICDEVNCGKGNCTTDDVYPF-FKCECDSGWKRTR-DSDDDLTFLPCVIPNCSLDYG 64
           F DK+CDEVNCG+GNC+ D   PF F C+CD GWKRTR D++DDL FLPCVIPNCSLDY 
Sbjct: 43  FFDKLCDEVNCGRGNCSVDVAKPFNFVCQCDPGWKRTRSDNEDDLQFLPCVIPNCSLDYS 102

Query: 65  CQSAP---PPVPDK--------------------------------------PVPRNSSF 119
           C  AP   PPVPD                                        V     F
Sbjct: 103 CMPAPLPSPPVPDNYSSIFDPCYWTYCGEGRCTKNHTYTHTCECNPGYTNLMNVSHFPCF 162

[Close]

BLAST of Cp4.1LG07g09490 vs. NCBI nr
Match: gi|590642743|ref|XP_007030604.1| (Slit protein C-product, putative [Theobroma cacao])

HSP 1 Score: 127.1 bits (318), Expect = 2.2e-26
Identity = 56/91 (61.54%), Postives = 66/91 (72.53%), Query Frame = 1


Query: 5   FIDKICDEVNCGKGNCTTDDVYPF-FKCECDSGWKRTRDSD--DDLTFLPCVIPNCSLDY 64
           F D++CDEV CGKG C  D  Y   + CECD+GWKRTRD D  DD+ FLPCVIPNC+LDY
Sbjct: 34  FYDRLCDEVECGKGTCKADISYRLNYICECDAGWKRTRDDDDNDDVRFLPCVIPNCTLDY 93

Query: 65  GCQSAPPPVPDKPVPRNSSFFNRTIGSDCAK 93
            CQ APPPVP+K VP NSSFF+    + C +
Sbjct: 94  SCQPAPPPVPEKEVPHNSSFFDPCYWTYCGE 124

The following BLAST results are available for this feature:

BLAST of Cp4.1LG07g09490 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG07g09490 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A072VNN2_MEDTR	2.6e-34	66.33	MtN26 OS=Medicago truncatula GN=MTR_1g080990 PE=4 SV=1	[more]
A0A0A0LLE2_CUCSA	7.5e-34	52.60	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G011540 PE=4 SV=1	[more]
A0A118F892_CYNCS	5.2e-27	45.06	Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_026845 PE=4 ...	[more]
A0A061F245_THECC	1.5e-26	61.54	Slit protein C-product, putative OS=Theobroma cacao GN=TCM_026380 PE=4 SV=1	[more]
A0A072VMH5_MEDTR	2.6e-26	59.34	MtN26 OS=Medicago truncatula GN=MTR_1g080990 PE=4 SV=1	[more]

BLAST of Cp4.1LG07g09490 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G14746.1	3.1e-15	40.86	EGF-like (InterPro:IPR006210)	[more]

BLAST of Cp4.1LG07g09490 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659071598\|ref\|XP_008460804.1\|	5.5e-46	76.79	PREDICTED: uncharacterized protein LOC103499567 [Cucumis melo]	[more]
gi\|922403715\|ref\|XP_013468991.1\|	3.7e-34	66.33	MtN26 [Medicago truncatula]	[more]
gi\|449442915\|ref\|XP_004139226.1\|	1.1e-33	52.60	PREDICTED: uncharacterized protein LOC101221137 [Cucumis sativus]	[more]
gi\|976621634\|gb\|KVF18568.1\|	7.5e-27	45.06	hypothetical protein Ccrd_026845 [Cynara cardunculus var. scolymus]	[more]
gi\|590642743\|ref\|XP_007030604.1\|	2.2e-26	61.54	Slit protein C-product, putative [Theobroma cacao]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG07g09490.1	Cp4.1LG07g09490.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG07g09490	Cucsa.133380	Cucumber (Gy14) v1	cgycpeB0356
Cp4.1LG07g09490	CmaCh12G011130	Cucurbita maxima (Rimu)	cmacpeB203
Cp4.1LG07g09490	CmoCh12G011310	Cucurbita moschata (Rifu)	cmocpeB175
Cp4.1LG07g09490	Cla019817	Watermelon (97103) v1	cpewmB806
Cp4.1LG07g09490	Csa2G011540	Cucumber (Chinese Long) v2	cpecuB820
Cp4.1LG07g09490	MELO3C004369	Melon (DHL92) v3.5.1	cpemeB771
Cp4.1LG07g09490	ClCG02G016520	Watermelon (Charleston Gray)	cpewcgB733
Cp4.1LG07g09490	CSPI02G03110	Wild cucumber (PI 183967)	cpecpiB821
Cp4.1LG07g09490	Lsi11G004600	Bottle gourd (USVL1VR-Ls)	cpelsiB659
Cp4.1LG07g09490	MELO3C004369.2	Melon (DHL92) v3.6.1	cpemedB907
Cp4.1LG07g09490	CsaV3_2G004250	Cucumber (Chinese Long) v3	cpecucB1014
Cp4.1LG07g09490	Bhi06G001509	Wax gourd	cpewgoB1006
Cp4.1LG07g09490	CsGy2G003220	Cucumber (Gy14) v2	cgybcpeB271

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG07g09490	Cp4.1LG00g04130	Cucurbita pepo (Zucchini)	cpecpeB016

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG07g09490	Cucurbita pepo (Zucchini)	cpecpeB015
Cp4.1LG07g09490	Cucurbita pepo (Zucchini)	cpecpeB139
Cp4.1LG07g09490	Cucurbita pepo (Zucchini)	cpecpeB504
Cp4.1LG07g09490	Cucurbita maxima (Rimu)	cmacpeB164
Cp4.1LG07g09490	Cucurbita maxima (Rimu)	cmacpeB789
Cp4.1LG07g09490	Cucurbita moschata (Rifu)	cmocpeB742
Cp4.1LG07g09490	Silver-seed gourd	carcpeB0411
Cp4.1LG07g09490	Silver-seed gourd	carcpeB1006