MELO3C004027 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C004027
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	DNA repair protein
Location	chr5 : 21863555 .. 21864540 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGCCGGAAAATCTCCTCCATCTCCTTCAAACCACCCAAAAATGCACCTTCGGCTGTCCGACCATCGACCGCTCCGTCGGCGGCGGCATCGCTTGTAGCTCCCTCACTGAGATCGTCGCCGAAAGCGGCTGCGGCAAAACCCAACTCTGTCTCCAGCTCTCTCTCTGCGCTCAGCTCCCTCTCTCCAATGGCGGCCTCAACGCCTCATCTCTCTACATCCACACCGAGTTCCCTTTTCCTTTCCGACGCCTTCAACAGCTTTCCCAAGCATTTTCCTCGTCATATCCCCAATTTTCCAATCCCTCCGATCACATCTTTGTCGAACCTGTTCACTCTGCCCACCAACTGTTCGACATAATGCCCAAGATAGAATCCTCCCTTGAAAATCGAAATTCCCATTTACCCATCAGGCTTATTGTGATCGATTCGATTGCGGCCTTGTTTCGCTCTGATTTTGACAACACCCCATCTGATCTCAAGAGGAGATCGTCTCTGTTTTTCAAGATTTCTGGGAAGTTGAAGCTATTGGCTAAGAAGTATTCTTTGGCTGTTGTGTTGACGAATCAGGTGGTTGATTTGATGGGTTCTTCTGATGGATTGAATGCTTTGAGAATTGGGAATTTGAAGTTCTTGTGTTCGTCGGAGAGACGGGTTTGCCCGGCATTAGGGCTGGCGTGGGCTAATTGTGTCAATTCAAGATTGTTTCTGTCAAGAAATGAGGAAGTTGTGGGGGAAGGTGAAGGGATGGTGAATGGAAGTGAATTAGTACAAAGAAGAAAAACAAGAAGATGGCTTCATGTTGTTTTTGCACCACATTTGCCTAAATCATCTTGTGAGTATGTAATCAACAGAGAAGGAGTTGTGGGAGTTGAAAGCTAATGACATCTTCTTGTATATGAACTTATTGATTTTGTGTGGAAGAACTAAAGTTTGTATAATGATTTATGATTTGGTTGTGATGAATGGAAGAACTTTGAGCTTTG

mRNA sequence

ATGACGCCGGAAAATCTCCTCCATCTCCTTCAAACCACCCAAAAATGCACCTTCGGCTGTCCGACCATCGACCGCTCCGTCGGCGGCGGCATCGCTTGTAGCTCCCTCACTGAGATCGTCGCCGAAAGCGGCTGCGGCAAAACCCAACTCTGTCTCCAGCTCTCTCTCTGCGCTCAGCTCCCTCTCTCCAATGGCGGCCTCAACGCCTCATCTCTCTACATCCACACCGAGTTCCCTTTTCCTTTCCGACGCCTTCAACAGCTTTCCCAAGCATTTTCCTCGTCATATCCCCAATTTTCCAATCCCTCCGATCACATCTTTGTCGAACCTGTTCACTCTGCCCACCAACTGTTCGACATAATGCCCAAGATAGAATCCTCCCTTGAAAATCGAAATTCCCATTTACCCATCAGGCTTATTGTGATCGATTCGATTGCGGCCTTGTTTCGCTCTGATTTTGACAACACCCCATCTGATCTCAAGAGGAGATCGTCTCTGTTTTTCAAGATTTCTGGGAAGTTGAAGCTATTGGCTAAGAAGTATTCTTTGGCTGTTGTGTTGACGAATCAGGTGGTTGATTTGATGGGTTCTTCTGATGGATTGAATGCTTTGAGAATTGGGAATTTGAAGTTCTTGTGTTCGTCGGAGAGACGGGTTTGCCCGGCATTAGGGCTGGCGTGGGCTAATTGTGTCAATTCAAGATTGTTTCTGTCAAGAAATGAGGAAGTTGTGGGGGAAGGTGAAGGGATGGTGAATGGAAGTGAATTAGTACAAAGAAGAAAAACAAGAAGATGGCTTCATGTTGTTTTTGCACCACATTTGCCTAAATCATCTTGTGAGTATGTAATCAACAGAGAAGGAGTTGTGGGAGTTGAAAGCTAATGACATCTTCTTGTATATGAACTTATTGATTTTGTGTGGAAGAACTAAAGTTTGTATAATGATTTATGATTTGGTTGTGATGAATGGAAGAACTTTGAGCTTTG

Coding sequence (CDS)

ATGACGCCGGAAAATCTCCTCCATCTCCTTCAAACCACCCAAAAATGCACCTTCGGCTGTCCGACCATCGACCGCTCCGTCGGCGGCGGCATCGCTTGTAGCTCCCTCACTGAGATCGTCGCCGAAAGCGGCTGCGGCAAAACCCAACTCTGTCTCCAGCTCTCTCTCTGCGCTCAGCTCCCTCTCTCCAATGGCGGCCTCAACGCCTCATCTCTCTACATCCACACCGAGTTCCCTTTTCCTTTCCGACGCCTTCAACAGCTTTCCCAAGCATTTTCCTCGTCATATCCCCAATTTTCCAATCCCTCCGATCACATCTTTGTCGAACCTGTTCACTCTGCCCACCAACTGTTCGACATAATGCCCAAGATAGAATCCTCCCTTGAAAATCGAAATTCCCATTTACCCATCAGGCTTATTGTGATCGATTCGATTGCGGCCTTGTTTCGCTCTGATTTTGACAACACCCCATCTGATCTCAAGAGGAGATCGTCTCTGTTTTTCAAGATTTCTGGGAAGTTGAAGCTATTGGCTAAGAAGTATTCTTTGGCTGTTGTGTTGACGAATCAGGTGGTTGATTTGATGGGTTCTTCTGATGGATTGAATGCTTTGAGAATTGGGAATTTGAAGTTCTTGTGTTCGTCGGAGAGACGGGTTTGCCCGGCATTAGGGCTGGCGTGGGCTAATTGTGTCAATTCAAGATTGTTTCTGTCAAGAAATGAGGAAGTTGTGGGGGAAGGTGAAGGGATGGTGAATGGAAGTGAATTAGTACAAAGAAGAAAAACAAGAAGATGGCTTCATGTTGTTTTTGCACCACATTTGCCTAAATCATCTTGTGAGTATGTAATCAACAGAGAAGGAGTTGTGGGAGTTGAAAGCTAA

Protein sequence

MTPENLLHLLQTTQKCTFGCPTIDRSVGGGIACSSLTEIVAESGCGKTQLCLQLSLCAQLPLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSDHIFVEPVHSAHQLFDIMPKIESSLENRNSHLPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISGKLKLLAKKYSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSERRVCPALGLAWANCVNSRLFLSRNEEVVGEGEGMVNGSELVQRRKTRRWLHVVFAPHLPKSSCEYVINREGVVGVES*

Homology

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BLAST of MELO3C004027 vs. Swiss-Prot
Match: XRCC3_ARATH (DNA repair protein XRCC3 homolog OS=Arabidopsis thaliana GN=XRCC3 PE=1 SV=1)

HSP 1 Score: 360.5 bits (924), Expect = 1.7e-98
Identity = 184/298 (61.74%), Postives = 222/298 (74.50%), Query Frame = 1


Query: 3   PENLLHLLQTTQKCTFGCPTIDRSVGGGIACSSLTEIVAESGCGKTQLCLQLSLCAQLPL 62
           PENLL    T +K T GC  +D  + GGI+C SLTEIVAESGCGKTQLCLQLSLC QLP+
Sbjct: 8   PENLLRRSPTNRKLTTGCEILDGCLRGGISCDSLTEIVAESGCGKTQLCLQLSLCTQLPI 67

Query: 63  SNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQF-----SNPSDHIFVEPVHSAHQL 122
           S+GGLN SSLY+H+EFPFPFRRL QLS  F  S P        NP DH+FV+ VHS   L
Sbjct: 68  SHGGLNGSSLYLHSEFPFPFRRLHQLSHTFHQSNPSIYANYNDNPCDHVFVQNVHSVDHL 127

Query: 123 FDIMPKIESSLENRNSHLPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISGKLKLL 182
           FDIMP+I+  + N  +  P++LIV+DS+AALFRS+FDNTPSDLK+RSSLFFKISGKLK L
Sbjct: 128 FDIMPRIDGFVGNSKTRFPLKLIVLDSVAALFRSEFDNTPSDLKKRSSLFFKISGKLKQL 187

Query: 183 AKKYSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSERRVCPALGLAWANCVNSRLFL 242
           A K+ LA+V+TNQV DL+ +SDGL+ LRIGNL++L SS RRV P+LGLAWANCVNSR F+
Sbjct: 188 ASKFDLAIVITNQVTDLVETSDGLSGLRIGNLRYLYSSGRRVVPSLGLAWANCVNSRFFI 247

Query: 243 SRNEE--VVGEGEGMVNGSELVQRRKTRRWLHVVFAPHLPKSSCEYVINREGVVGVES 294
           SR++   V    E   N S  V R   RR L +VF+P+LP SSCE++I REG+  V++
Sbjct: 248 SRSDGSIVKDRSEKDENCSSSVSRSAKRR-LDIVFSPYLPGSSCEFMITREGICAVQA 304

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BLAST of MELO3C004027 vs. Swiss-Prot
Match: XRCC3_MOUSE (DNA repair protein XRCC3 OS=Mus musculus GN=Xrcc3 PE=2 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.0e-34
Identity = 105/302 (34.77%), Postives = 148/302 (49.01%), Query Frame = 1


Query: 7   LHLLQTT-------QKCTFGCPTIDRSVGGGIACSSLTEIVAESGCGKTQLCLQLSLCAQ 66
           LHL Q         Q+ + GCP +D+ +GGG+    +T +   S  GKTQL LQL L  Q
Sbjct: 66  LHLFQQKESFPEQHQRLSLGCPVLDQFLGGGLPLEGITGLAGCSSAGKTQLALQLCLAVQ 125

Query: 67  LPLSNGGLNASSLYIHTEFPFPFRRLQQL---SQAFSSSYPQ-------FSNPSDHIFVE 126
            P   GGL A ++YI TE  FP +RL QL    +   +  P+       FSN   HIF+E
Sbjct: 126 FPRQYGGLEAGAVYICTEDAFPSKRLWQLIAQQRRLRTDAPEELIEKIRFSN---HIFIE 185

Query: 127 PVHSAHQLFDIMPKIESSLENRNSHLPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFK 186
                  L + + K    L +R      RL+V+DSIAA FR +F    S +  R+ L   
Sbjct: 186 HAADVDTLLECVSKKVPILLSRGM---ARLVVVDSIAAPFRCEFHLQASAI--RAKLLLS 245

Query: 187 ISGKLKLLAKKYSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSERRVCPALGLAWAN 246
           +   L+ L+  +   V+  NQV D++     ++       + L +SE R+ PALG+ WAN
Sbjct: 246 LGATLRRLSSTFRSPVLCINQVTDMVEDQQSVS-------RSLGASEERLSPALGITWAN 305

Query: 247 CVNSRLFLSRNEEVVGEGEGMVNGSELVQRRKTRRWLHVVFAPHLPKSSCEYVINREGVV 292
            +  RL + R  E     + +  G      R   R L V+FAPHLP SSC Y ++ EG+ 
Sbjct: 306 QLLMRLMVDRTHE-----DDVTTGLP----RSPVRTLRVLFAPHLPLSSCCYTVSGEGIR 343

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BLAST of MELO3C004027 vs. Swiss-Prot
Match: XRCC3_HUMAN (DNA repair protein XRCC3 OS=Homo sapiens GN=XRCC3 PE=1 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 8.1e-32
Identity = 98/285 (34.39%), Postives = 137/285 (48.07%), Query Frame = 1


Query: 14  QKCTFGCPTIDRSVGGGIACSSLTEIVAESGCGKTQLCLQLSLCAQLPLSNGGLNASSLY 73
           Q+ + GCP +D  + GG+    +TE+   S  GKTQL LQL L  Q P  +GGL A ++Y
Sbjct: 80  QRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCLAVQFPRQHGGLEAGAVY 139

Query: 74  IHTEFPFPFRRLQQLSQAFSSSYPQFSNPSDHIFVEPVHSAHQLF-DIMPKIESSLENRN 133
           I TE  FP +RLQQL     +  P+         ++ +    Q+F + +  +++ LE  N
Sbjct: 140 ICTEDAFPHKRLQQL----MAQQPRLRTDVPGELLQKLRFGSQIFIEHVADVDTLLECVN 199

Query: 134 SHLPI-------RLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISGKLKLLAKKYSLAV 193
             +P+       RL+VIDS+AA FR +FD+  S  + R      +   L+ L+  +   V
Sbjct: 200 KKVPVLLSRGMARLVVIDSVAAPFRCEFDSQASAPRARH--LQSLGATLRELSSAFQSPV 259

Query: 194 VLTNQVVDLMGSSDGLNALRIGNLKFLCSSERRVCPALGLAWANCVNSRLFLSRNEEVVG 253
           +  NQV + M      +    G L F    + RV PALG+ WAN +  RL   R  E   
Sbjct: 260 LCINQVTEAMEEQGAAH----GPLGFW---DERVSPALGITWANQLLVRLLADRLRE--- 319

Query: 254 EGEGMVNGSELVQRRKTRRWLHVVFAPHLPKSSCEYVINREGVVG 291
                    E        R L V+ APHLP SSC Y I+ EGV G
Sbjct: 320 ---------EEAALGCPARTLRVLSAPHLPPSSCSYTISAEGVRG 339

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BLAST of MELO3C004027 vs. Swiss-Prot
Match: XRCC3_BOVIN (DNA repair protein XRCC3 OS=Bos taurus GN=XRCC3 PE=2 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.4e-31
Identity = 101/303 (33.33%), Postives = 141/303 (46.53%), Query Frame = 1


Query: 7   LHLLQTT-------QKCTFGCPTIDRSVGGGIACSSLTEIVAESGCGKTQLCLQLSLCAQ 66
           LHLL+         Q+ + GCP +D  + GG+    +TE+   S  GKTQL LQL L  Q
Sbjct: 66  LHLLRQEGPFPEQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCLAVQ 125

Query: 67  LPLSNGGLNASSLYIHTEFPFPFRRLQQL---SQAFSSSYPQFSNPSDHIFVEPVHSAHQ 126
           LP  +GGL A ++Y+ TE  FP RRLQQL    Q   +  P       H+ +  +   HQ
Sbjct: 126 LPPRHGGLGAGAVYVCTEDAFPSRRLQQLIAQQQRLRADVP------GHV-ISKIRFGHQ 185

Query: 127 LF-DIMPKIESSLENRNSHLPI-------RLIVIDSIAALFRSDFDNTPSDLKRRSSLFF 186
           +F +    +++ L+     +P+       RL+VIDS+AA FR +FD   + L  R+    
Sbjct: 186 IFIEHAADVDTLLQCVREKVPVLLARGMARLVVIDSVAAPFRCEFDG--AALALRAQRLL 245

Query: 187 KISGKLKLLAKKYSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSERRVCPALGLAWA 246
            +  +L+ L+  +   V+  NQV + +   D            L +    + PALG+ WA
Sbjct: 246 ALGAELRRLSCAFRSPVLCVNQVTEAVEEQD------------LVAGPPGMSPALGITWA 305

Query: 247 NCVNSRLFLSRNEEVVGEGEGMVNGSELVQRRKTRRWLHVVFAPHLPKSSCEYVINREGV 292
           N +  RL   R               E        R L VVFAPHLP SSC Y I  EGV
Sbjct: 306 NQLLVRLLADRQR------------PEEAPLTPPGRTLRVVFAPHLPASSCSYTIAAEGV 335

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BLAST of MELO3C004027 vs. Swiss-Prot
Match: RA51B_HUMAN (DNA repair protein RAD51 homolog 2 OS=Homo sapiens GN=RAD51B PE=1 SV=2)

HSP 1 Score: 128.6 bits (322), Expect = 1.1e-28
Identity = 89/283 (31.45%), Postives = 143/283 (50.53%), Query Frame = 1


Query: 23  IDRSVGGGIACSSLTEIVAESGCGKTQLCLQLSLCAQLPLSNGGLNASSLYIHTEFPFPF 82
           +D ++ GG+AC SLTEI    GCGKTQ C+ +S+ A LP + GGL  + +YI TE  F  
Sbjct: 90  LDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYIDTESAFSA 149

Query: 83  RRLQQLSQAFSSSYPQFSNPSDHIFV--EPVHSAHQLF--DIMPKIESSLENRNSHLPIR 142
            RL ++++   S +P++ N  + + +    VH   +L   +++ +IE SLE       I+
Sbjct: 150 ERLVEIAE---SRFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIE-SLEEEIISKGIK 209

Query: 143 LIVIDSIAALFRSDFD-NTPSDLKRRSSLFFKISGKLKLLAKKYSLAVVLTNQV------ 202
           L+++DS+A++ R +FD     +LK R+    + +  LK LA+++S+ V+LTNQ+      
Sbjct: 210 LVILDSVASVVRKEFDAQLQGNLKERNKFLAREASSLKYLAEEFSIPVILTNQITTHLSG 269

Query: 203 -----VDLMGSSDGLNALRIGNLKFLCSSERRVCPALGLAWANCVNSRLFLSRNEEVVGE 262
                 DL+  +D L      +L    S    V  ALG  W++ VN+RL L   +     
Sbjct: 270 ALASQADLVSPADDL------SLSEGTSGSSCVIAALGNTWSHSVNTRLILQYLD----- 329

Query: 263 GEGMVNGSELVQRRKTRRWLHVVFAPHLPKSSCEYVINREGVV 290
                           RR + +  +P  P +S  Y I  EG+V
Sbjct: 330 --------------SERRQILIAKSPLAPFTSFVYTIKEEGLV 343

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BLAST of MELO3C004027 vs. TrEMBL
Match: A0A0A0LK93_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G058700 PE=4 SV=1)

HSP 1 Score: 576.6 bits (1485), Expect = 1.7e-161
Identity = 287/293 (97.95%), Postives = 291/293 (99.32%), Query Frame = 1


Query: 1   MTPENLLHLLQTTQKCTFGCPTIDRSVGGGIACSSLTEIVAESGCGKTQLCLQLSLCAQL 60
           MTPENLLHLLQTTQKCTFGCP IDRSVGGG+ACSSLTEIVAESGCGKTQLCLQLSLCAQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACSSLTEIVAESGCGKTQLCLQLSLCAQL 60

Query: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSDHIFVEPVHSAHQLFDI 120
           PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSDHIFVEPVHSAHQLFDI
Sbjct: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSDHIFVEPVHSAHQLFDI 120

Query: 121 MPKIESSLENRNSHLPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISGKLKLLAKK 180
           MPKIESSLENRNS LPIRLIVIDSIAALFRSDF+NTPSDLKRRSSLFFKISGKLKLLAKK
Sbjct: 121 MPKIESSLENRNSQLPIRLIVIDSIAALFRSDFNNTPSDLKRRSSLFFKISGKLKLLAKK 180

Query: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSERRVCPALGLAWANCVNSRLFLSRN 240
           YSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSERRVCPALGLAWANCVNSRLFLSRN
Sbjct: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSERRVCPALGLAWANCVNSRLFLSRN 240

Query: 241 EEVVGEGEGMVNGSELVQRRKTRRWLHVVFAPHLPKSSCEYVINREGVVGVES 294
           EEVVGEGEGM+NGSELVQRR+TRRWLHVVFAPHLPKSSCEYVINREGVVGVES
Sbjct: 241 EEVVGEGEGMMNGSELVQRRRTRRWLHVVFAPHLPKSSCEYVINREGVVGVES 293

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BLAST of MELO3C004027 vs. TrEMBL
Match: A0A067KJJ0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08670 PE=4 SV=1)

HSP 1 Score: 396.4 bits (1017), Expect = 3.1e-107
Identity = 205/304 (67.43%), Postives = 235/304 (77.30%), Query Frame = 1


Query: 1   MTPENLLHLLQTTQKCTFGCPTIDRSVGGGIACSSLTEIVAESGCGKTQLCLQLSLCAQL 60
           MTP NLL      QKCTFGCP +DR + GG+ C+S+TEIVAESG GKTQLCLQLSLCAQL
Sbjct: 1   MTPHNLLQHPFPAQKCTFGCPILDRCLSGGVPCNSITEIVAESGSGKTQLCLQLSLCAQL 60

Query: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFS------------NPSDHIFV 120
           P+S GGL+ASSLY++TEFPFPFRRL QLS +F S YPQ              NP D+I+V
Sbjct: 61  PVSIGGLSASSLYLYTEFPFPFRRLNQLSHSFQSLYPQIFINDSDSTNNKSYNPCDNIYV 120

Query: 121 EPVHSAHQLFDIMPKIESSLENRNSHLPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFF 180
           + VHSA QLFDIMPKIES L N  + LP+RLIVIDS+AALFRS+F+NTPSDLKRRSSLFF
Sbjct: 121 QSVHSADQLFDIMPKIESFLLNSKTQLPMRLIVIDSVAALFRSEFENTPSDLKRRSSLFF 180

Query: 181 KISGKLKLLAKKYSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSERRVCPALGLAWA 240
           KISGKLK LA ++ LAVV+TNQVVD MGS +G+N +RIGNL  LCSS RRVCPALGLAWA
Sbjct: 181 KISGKLKALAARFDLAVVVTNQVVDFMGSGEGVNGVRIGNLGSLCSSGRRVCPALGLAWA 240

Query: 241 NCVNSRLFLSRNEEVVGEGEGMVNGSELVQRRKTRRWLHVVFAPHLPKSSCEYVINREGV 293
           NCVN RLFL+R++       G  +G    Q   TRRWLHVVFAPHLP S CEYVI REGV
Sbjct: 241 NCVNLRLFLARDD------TGAESGFACCQ---TRRWLHVVFAPHLPYSCCEYVIRREGV 295

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BLAST of MELO3C004027 vs. TrEMBL
Match: W9SDI8_9ROSA (DNA repair protein XRCC3-like protein OS=Morus notabilis GN=L484_000769 PE=4 SV=1)

HSP 1 Score: 391.7 bits (1005), Expect = 7.7e-106
Identity = 201/295 (68.14%), Postives = 235/295 (79.66%), Query Frame = 1


Query: 1   MTPENLLHLLQTTQKCTFGCPTIDRSVGGGIACSSLTEIVAESGCGKTQLCLQLSLCAQL 60
           ++PENLL   Q TQKCT GCP +DR +GGGI C+S+TE+VAES  GKTQ CLQL+L AQL
Sbjct: 4   ISPENLLRRPQPTQKCTLGCPVLDRCLGGGIPCNSMTELVAESASGKTQFCLQLALSAQL 63

Query: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSS--SYPQFSNPSDHIFVEPVHSAHQLF 120
           P S GGL+ASSLY+HTEFPFPFRRL QL +AF    S  +  +PSD++FV  VHSA QL 
Sbjct: 64  PPSRGGLSASSLYLHTEFPFPFRRLHQLRRAFCDRHSIGREFDPSDNVFVHAVHSADQLL 123

Query: 121 DIMPKIESSLENRNSHLPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISGKLKLLA 180
           D M KIES L  R    P+R+IVIDSIAALFRS+FDNTP DLKRRSSLFFKISGKLK L 
Sbjct: 124 DEMRKIESFLSERKPRFPVRVIVIDSIAALFRSEFDNTPFDLKRRSSLFFKISGKLKSLV 183

Query: 181 KKYSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSERRVCPALGLAWANCVNSRLFLS 240
            ++++AVV+TNQVVD MG + G+N LRIGNLK+L SSERRVCPALGLAWANCVNSRLFLS
Sbjct: 184 DRFNVAVVVTNQVVDFMGDNGGMNGLRIGNLKYLYSSERRVCPALGLAWANCVNSRLFLS 243

Query: 241 RNEEVVGEGEGMVN-GSELVQRRKTRRWLHVVFAPHLPKSSCEYVINREGVVGVE 293
           RNEEV+ E  G  N G+    RR+TRR +HV+FAPHLP+SS E+VI REGV GV+
Sbjct: 244 RNEEVIREENGSANAGNGDTLRRQTRRRIHVLFAPHLPESSTEFVIRREGVFGVD 298

[Close]

BLAST of MELO3C004027 vs. TrEMBL
Match: B9T088_RICCO (X-ray repair cross complementing protein 3, xrcc3, putative OS=Ricinus communis GN=RCOM_0461750 PE=4 SV=1)

HSP 1 Score: 380.2 bits (975), Expect = 2.3e-102
Identity = 202/307 (65.80%), Postives = 235/307 (76.55%), Query Frame = 1


Query: 1   MTPENLLHLLQTTQKCTFGCPTIDRSVGGGIACSSLTEIVAESGCGKTQLCLQLSLCAQL 60
           M PENL+     TQKCT GCP +DR + GGI C+S+TEIVAESG GKTQLCLQLSL AQL
Sbjct: 1   MKPENLVFQPIPTQKCTLGCPILDRCLNGGIPCNSITEIVAESGTGKTQLCLQLSLYAQL 60

Query: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQ-------------FSNPSDHIF 120
           PLS GGL+ASSLY+HTEFPFPFRRL QLS +F S +PQ             + NP D+IF
Sbjct: 61  PLSLGGLSASSLYLHTEFPFPFRRLHQLSHSFQSQHPQIFINNNNNDTINNYDNPCDNIF 120

Query: 121 VEPVHSAHQLFDIMPKIESSLENRNSHLPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLF 180
           V  V SA  LFDIMPKIES L    +HLP+RLIVIDS+AALFRS+F+NT +DLKRRS+LF
Sbjct: 121 VHSVRSADYLFDIMPKIESFLVYSKTHLPVRLIVIDSVAALFRSEFENTATDLKRRSALF 180

Query: 181 FKISGKLKLLAKKYSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSERRVCPALGLAW 240
           FKIS KL+ LA +++LAVV++NQVVD +GS DGLN  RIG+L  L SS RRVCPALGLAW
Sbjct: 181 FKISAKLRALAWRFNLAVVVSNQVVDFVGSGDGLNGARIGDLGSLYSSGRRVCPALGLAW 240

Query: 241 ANCVNSRLFLSRNEEVVGEGEGMVNGSELVQ-RRKTRRWLHVVFAPHLPKSSCEYVINRE 294
           ANCVNSRLFLSR+E       GMV+G+E      +TRR LHVVFAPHLP SSCE+VI RE
Sbjct: 241 ANCVNSRLFLSRDE------NGMVDGAESGSFCSQTRRRLHVVFAPHLPYSSCEFVIRRE 300

[Close]

BLAST of MELO3C004027 vs. TrEMBL
Match: F6GXG5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0052g00940 PE=4 SV=1)

HSP 1 Score: 378.3 bits (970), Expect = 8.8e-102
Identity = 201/300 (67.00%), Postives = 234/300 (78.00%), Query Frame = 1


Query: 1   MTPENLLH--LLQTTQKCTFGCPTIDRSVGGGIACSSLTEIVAESGCGKTQLCLQLSLCA 60
           M P+NLL   L  TTQKCT GCP +DR + GG+ C+S+TE+VAESG GKTQLCLQL L A
Sbjct: 1   MIPQNLLQNPLALTTQKCTLGCPILDRCLAGGVPCNSITELVAESGSGKTQLCLQLVLSA 60

Query: 61  QLPLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFS----NPSDHIFVEPVHSA 120
           QLP S GGL ASSLYIH+EFPFP RRLQQLSQ+F SSY        NP D + V  V SA
Sbjct: 61  QLPTSLGGLAASSLYIHSEFPFPSRRLQQLSQSFRSSYSHVLDSEYNPLDFVLVRGVQSA 120

Query: 121 HQLFDIMPKIESSLENRNSHLPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISGKL 180
            QLFD++ K++S L    + LP+RLIVIDSIAALFR +F+NTP DLKRRSSLFFKISGKL
Sbjct: 121 DQLFDVLLKMDSVLLRPPTQLPVRLIVIDSIAALFRGEFENTPFDLKRRSSLFFKISGKL 180

Query: 181 KLLAKKYSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSERRVCPALGLAWANCVNSR 240
           K LA+++ LAVV+TNQVVD +G + GLN LR+GNL  L SS RRVC ALGL+WANCVNSR
Sbjct: 181 KALAERFGLAVVVTNQVVDFVGQAGGLNGLRVGNLGSLWSSGRRVCAALGLSWANCVNSR 240

Query: 241 LFLSRNEEVVGE--GEGMVNGSELVQRRKTRRWLHVVFAPHLPKSSCEYVINREGVVGVE 293
           LFLSRNEE+VGE  G G V   + V  R TRR LHV+FAPHLP+SSCE+VI+REGV+GVE
Sbjct: 241 LFLSRNEEIVGEVTGLGGVGAGDTVS-RLTRRHLHVIFAPHLPESSCEFVISREGVLGVE 299

[Close]

BLAST of MELO3C004027 vs. TAIR10
Match: AT5G57450.1 (AT5G57450.1 homolog of X-ray repair cross complementing 3 (XRCC3))

HSP 1 Score: 360.5 bits (924), Expect = 9.6e-100
Identity = 184/298 (61.74%), Postives = 222/298 (74.50%), Query Frame = 1


Query: 3   PENLLHLLQTTQKCTFGCPTIDRSVGGGIACSSLTEIVAESGCGKTQLCLQLSLCAQLPL 62
           PENLL    T +K T GC  +D  + GGI+C SLTEIVAESGCGKTQLCLQLSLC QLP+
Sbjct: 8   PENLLRRSPTNRKLTTGCEILDGCLRGGISCDSLTEIVAESGCGKTQLCLQLSLCTQLPI 67

Query: 63  SNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQF-----SNPSDHIFVEPVHSAHQL 122
           S+GGLN SSLY+H+EFPFPFRRL QLS  F  S P        NP DH+FV+ VHS   L
Sbjct: 68  SHGGLNGSSLYLHSEFPFPFRRLHQLSHTFHQSNPSIYANYNDNPCDHVFVQNVHSVDHL 127

Query: 123 FDIMPKIESSLENRNSHLPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISGKLKLL 182
           FDIMP+I+  + N  +  P++LIV+DS+AALFRS+FDNTPSDLK+RSSLFFKISGKLK L
Sbjct: 128 FDIMPRIDGFVGNSKTRFPLKLIVLDSVAALFRSEFDNTPSDLKKRSSLFFKISGKLKQL 187

Query: 183 AKKYSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSERRVCPALGLAWANCVNSRLFL 242
           A K+ LA+V+TNQV DL+ +SDGL+ LRIGNL++L SS RRV P+LGLAWANCVNSR F+
Sbjct: 188 ASKFDLAIVITNQVTDLVETSDGLSGLRIGNLRYLYSSGRRVVPSLGLAWANCVNSRFFI 247

Query: 243 SRNEE--VVGEGEGMVNGSELVQRRKTRRWLHVVFAPHLPKSSCEYVINREGVVGVES 294
           SR++   V    E   N S  V R   RR L +VF+P+LP SSCE++I REG+  V++
Sbjct: 248 SRSDGSIVKDRSEKDENCSSSVSRSAKRR-LDIVFSPYLPGSSCEFMITREGICAVQA 304

[Close]

BLAST of MELO3C004027 vs. TAIR10
Match: AT2G45280.2 (AT2G45280.2 RAS associated with diabetes protein 51C)

HSP 1 Score: 107.5 bits (267), Expect = 1.5e-23
Identity = 86/302 (28.48%), Postives = 141/302 (46.69%), Query Frame = 1


Query: 5   NLLHLLQTTQKCTFGCPTIDRSVGGGIACSSLTEIVAESGCGKTQLCLQLSLCAQLPLSN 64
           ++LH  ++  + T  C  +D  +GGGI+C  +TEI    G GKTQ+ +QLS+  Q+P   
Sbjct: 118 DMLHEEESLPRITTSCSDLDNILGGGISCRDVTEIGGVPGIGKTQIGIQLSVNVQIPREC 177

Query: 65  GGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFS--------------NPSD---HIF 124
           GGL   ++YI TE  F   R  Q+++A      +++               P D   +IF
Sbjct: 178 GGLGGKAIYIDTEGSFMVERALQIAEACVEDMEEYTGYMHKHFQANQVQMKPEDILENIF 237

Query: 125 VEPVHSAHQLFDIMPKIESSL-ENRNSHLPIRLIVIDSIAALFRSDFDNTPSDLKRRSSL 184
              V S  +   ++  +E  + EN++    ++++++DSI   FR D+D    DL +R+ +
Sbjct: 238 YFRVCSYTEQIALVNHLEKFISENKD----VKVVIVDSITFHFRQDYD----DLAQRTRV 297

Query: 185 FFKISGKLKLLAKKYSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSERRVCPALGLA 244
             +++ K   LAKK+SLAVVL NQV      S+G   L +               ALG +
Sbjct: 298 LSEMALKFMKLAKKFSLAVVLLNQVTTKF--SEGSFQLAL---------------ALGDS 357

Query: 245 WANCVNSRLFLSRNEEVVGEGEGMVNGSELVQRRKTRRWLHVVFAPHLPKSSCEYVINRE 289
           W++   +R+ L              NG E        R+ ++  +P LP +S  Y +   
Sbjct: 358 WSHSCTNRVIL------------YWNGDE--------RYAYIDKSPSLPSASASYTVTSR 374

[Close]

BLAST of MELO3C004027 vs. TAIR10
Match: AT5G20850.1 (AT5G20850.1 RAS associated with diabetes protein 51)

HSP 1 Score: 87.0 bits (214), Expect = 2.1e-17
Identity = 77/272 (28.31%), Postives = 117/272 (43.01%), Query Frame = 1


Query: 17  TFGCPTIDRSVGGGIACSSLTEIVAESGCGKTQLCLQLSLCAQLPLSNGGLNASSLYIHT 76
           T G   +D+ + GGI   S+TE+  E   GKTQLC  L +  QLP+  GG    ++YI  
Sbjct: 106 TSGSRELDKVLEGGIETGSITELYGEFRSGKTQLCHTLCVTCQLPMDQGGGEGKAMYIDA 165

Query: 77  EFPFPFRRLQQLSQAFSSSYPQFSNPSDHIFVEPVHSAHQLFDIMPKIESSLENRNSHLP 136
           E  F  +RL Q++  F  +        +  +    ++ HQ   ++      +E R     
Sbjct: 166 EGTFRPQRLLQIADRFGLNGADVL--ENVAYARAYNTDHQSRLLLEAASMMIETR----- 225

Query: 137 IRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISGKLKLLAKKYSLAVVLTNQVVDLMG 196
             L+++DS  AL+R+DF     +L  R     K    L+ LA ++ +AVV+TNQVV    
Sbjct: 226 FALLIVDSATALYRTDFSGR-GELSARQMHLAKFLRSLQKLADEFGVAVVITNQVV---A 285

Query: 197 SSDGLNALRIGNLKFLCSSERRVCPALGLAWANCVNSRLFLSRNEEVVGEGEGMVNGSEL 256
             DG +AL  G          +  P  G   A+   +RL L +                 
Sbjct: 286 QVDG-SALFAG---------PQFKPIGGNIMAHATTTRLALRKG---------------- 337

Query: 257 VQRRKTRRWLHVVFAPHLPKSSCEYVINREGV 289
              R   R   V+ +P LP++   + I+ EGV
Sbjct: 346 ---RAEERICKVISSPCLPEAEARFQISTEGV 337

[Close]

BLAST of MELO3C004027 vs. TAIR10
Match: AT3G22880.1 (AT3G22880.1 DNA repair (Rad51) family protein)

HSP 1 Score: 85.5 bits (210), Expect = 6.0e-17
Identity = 59/192 (30.73%), Postives = 95/192 (49.48%), Query Frame = 1


Query: 1   MTPENLLHLLQTTQKCTFGCPTIDRSVGGGIACSSLTEIVAESGCGKTQLCLQLSLCAQL 60
           MT  + L   ++  K T GC  +D  +GGGI  S++TE   E   GKTQL   L +  QL
Sbjct: 93  MTGSDALIKRKSVVKITTGCQALDDLLGGGIETSAITEAFGEFRSGKTQLAHTLCVTTQL 152

Query: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSDHIFVEPVHSAHQLFDI 120
           P +  G N    YI TE  F   R+  +++ F           D+I     ++    +++
Sbjct: 153 PTNMKGGNGKVAYIDTEGTFRPDRIVPIAERFGMDP---GAVLDNIIYARAYTYEHQYNL 212

Query: 121 MPKIESSLENRNSHLPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISGKLKLLAKK 180
           +      L  + S  P R++++DSI ALFR DF     +L  R     ++  +L  +A++
Sbjct: 213 L----LGLAAKMSEEPFRILIVDSIIALFRVDFTGR-GELADRQQKLAQMLSRLIKIAEE 272

Query: 181 YSLAVVLTNQVV 193
           +++AV +TNQV+
Sbjct: 273 FNVAVYMTNQVI 276

[Close]

BLAST of MELO3C004027 vs. TAIR10
Match: AT2G28560.1 (AT2G28560.1 DNA repair (Rad51) family protein)

HSP 1 Score: 73.6 bits (179), Expect = 2.3e-13
Identity = 70/229 (30.57%), Postives = 110/229 (48.03%), Query Frame = 1


Query: 23  IDRSVGGGIACSSLTEIVAESGCGKTQLCLQLSLCAQLPLSNGGLNASSLYIHTEFPFPF 82
           +D ++ GGI    LTE+V   G GK+Q C++L+L A  P++ GGL+   +YI  E  F  
Sbjct: 91  LDDTLCGGIPFGVLTELVGPPGIGKSQFCMKLALSASFPVAYGGLDGRVIYIDVESKFSS 150

Query: 83  RRLQQLSQAFSSSYPQFSNPSDHIFVEPVHSAHQLFDIMPK-----IESSLENRNSHL-- 142
           RR+ ++      S+P+      H+       A ++  + P       ES  E +NS L  
Sbjct: 151 RRVIEMG---LESFPEVF----HLKGMAQEMAGRILVLRPTSLANFTESIQELKNSILQN 210

Query: 143 PIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISGKLKLLAKKYSLAVVLTNQVVDLM 202
            ++L+VIDS+ AL     +N P   +R+  L + IS  LK LA+   + +V+TNQV    
Sbjct: 211 QVKLLVIDSMTALLSG--ENKPG-AQRQPQLGWHIS-FLKSLAEFSRIPIVVTNQVRSQN 270

Query: 203 GSSDGLNALRI-------GNLKFLCSSERRVCPALGLAWANCVNSRLFL 238
                  + +         N K   + +  +  ALG+ WA+ V  RL L
Sbjct: 271 RDETSQYSFQAKVKDEFKDNTK---TYDSHLVAALGINWAHAVTIRLVL 305

[Close]

BLAST of MELO3C004027 vs. NCBI nr
Match: gi|659069773|ref|XP_008451720.1| (PREDICTED: DNA repair protein XRCC3 homolog [Cucumis melo])

HSP 1 Score: 586.6 bits (1511), Expect = 2.3e-164
Identity = 293/293 (100.00%), Postives = 293/293 (100.00%), Query Frame = 1


Query: 1   MTPENLLHLLQTTQKCTFGCPTIDRSVGGGIACSSLTEIVAESGCGKTQLCLQLSLCAQL 60
           MTPENLLHLLQTTQKCTFGCPTIDRSVGGGIACSSLTEIVAESGCGKTQLCLQLSLCAQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPTIDRSVGGGIACSSLTEIVAESGCGKTQLCLQLSLCAQL 60

Query: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSDHIFVEPVHSAHQLFDI 120
           PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSDHIFVEPVHSAHQLFDI
Sbjct: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSDHIFVEPVHSAHQLFDI 120

Query: 121 MPKIESSLENRNSHLPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISGKLKLLAKK 180
           MPKIESSLENRNSHLPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISGKLKLLAKK
Sbjct: 121 MPKIESSLENRNSHLPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISGKLKLLAKK 180

Query: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSERRVCPALGLAWANCVNSRLFLSRN 240
           YSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSERRVCPALGLAWANCVNSRLFLSRN
Sbjct: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSERRVCPALGLAWANCVNSRLFLSRN 240

Query: 241 EEVVGEGEGMVNGSELVQRRKTRRWLHVVFAPHLPKSSCEYVINREGVVGVES 294
           EEVVGEGEGMVNGSELVQRRKTRRWLHVVFAPHLPKSSCEYVINREGVVGVES
Sbjct: 241 EEVVGEGEGMVNGSELVQRRKTRRWLHVVFAPHLPKSSCEYVINREGVVGVES 293

[Close]

BLAST of MELO3C004027 vs. NCBI nr
Match: gi|449466133|ref|XP_004150781.1| (PREDICTED: DNA repair protein XRCC3 homolog [Cucumis sativus])

HSP 1 Score: 576.6 bits (1485), Expect = 2.4e-161
Identity = 287/293 (97.95%), Postives = 291/293 (99.32%), Query Frame = 1


Query: 1   MTPENLLHLLQTTQKCTFGCPTIDRSVGGGIACSSLTEIVAESGCGKTQLCLQLSLCAQL 60
           MTPENLLHLLQTTQKCTFGCP IDRSVGGG+ACSSLTEIVAESGCGKTQLCLQLSLCAQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACSSLTEIVAESGCGKTQLCLQLSLCAQL 60

Query: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSDHIFVEPVHSAHQLFDI 120
           PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSDHIFVEPVHSAHQLFDI
Sbjct: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSDHIFVEPVHSAHQLFDI 120

Query: 121 MPKIESSLENRNSHLPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISGKLKLLAKK 180
           MPKIESSLENRNS LPIRLIVIDSIAALFRSDF+NTPSDLKRRSSLFFKISGKLKLLAKK
Sbjct: 121 MPKIESSLENRNSQLPIRLIVIDSIAALFRSDFNNTPSDLKRRSSLFFKISGKLKLLAKK 180

Query: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSERRVCPALGLAWANCVNSRLFLSRN 240
           YSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSERRVCPALGLAWANCVNSRLFLSRN
Sbjct: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSERRVCPALGLAWANCVNSRLFLSRN 240

Query: 241 EEVVGEGEGMVNGSELVQRRKTRRWLHVVFAPHLPKSSCEYVINREGVVGVES 294
           EEVVGEGEGM+NGSELVQRR+TRRWLHVVFAPHLPKSSCEYVINREGVVGVES
Sbjct: 241 EEVVGEGEGMMNGSELVQRRRTRRWLHVVFAPHLPKSSCEYVINREGVVGVES 293

[Close]

BLAST of MELO3C004027 vs. NCBI nr
Match: gi|802608063|ref|XP_012074059.1| (PREDICTED: DNA repair protein XRCC3 homolog [Jatropha curcas])

HSP 1 Score: 396.4 bits (1017), Expect = 4.5e-107
Identity = 205/304 (67.43%), Postives = 235/304 (77.30%), Query Frame = 1


Query: 1   MTPENLLHLLQTTQKCTFGCPTIDRSVGGGIACSSLTEIVAESGCGKTQLCLQLSLCAQL 60
           MTP NLL      QKCTFGCP +DR + GG+ C+S+TEIVAESG GKTQLCLQLSLCAQL
Sbjct: 1   MTPHNLLQHPFPAQKCTFGCPILDRCLSGGVPCNSITEIVAESGSGKTQLCLQLSLCAQL 60

Query: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFS------------NPSDHIFV 120
           P+S GGL+ASSLY++TEFPFPFRRL QLS +F S YPQ              NP D+I+V
Sbjct: 61  PVSIGGLSASSLYLYTEFPFPFRRLNQLSHSFQSLYPQIFINDSDSTNNKSYNPCDNIYV 120

Query: 121 EPVHSAHQLFDIMPKIESSLENRNSHLPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFF 180
           + VHSA QLFDIMPKIES L N  + LP+RLIVIDS+AALFRS+F+NTPSDLKRRSSLFF
Sbjct: 121 QSVHSADQLFDIMPKIESFLLNSKTQLPMRLIVIDSVAALFRSEFENTPSDLKRRSSLFF 180

Query: 181 KISGKLKLLAKKYSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSERRVCPALGLAWA 240
           KISGKLK LA ++ LAVV+TNQVVD MGS +G+N +RIGNL  LCSS RRVCPALGLAWA
Sbjct: 181 KISGKLKALAARFDLAVVVTNQVVDFMGSGEGVNGVRIGNLGSLCSSGRRVCPALGLAWA 240

Query: 241 NCVNSRLFLSRNEEVVGEGEGMVNGSELVQRRKTRRWLHVVFAPHLPKSSCEYVINREGV 293
           NCVN RLFL+R++       G  +G    Q   TRRWLHVVFAPHLP S CEYVI REGV
Sbjct: 241 NCVNLRLFLARDD------TGAESGFACCQ---TRRWLHVVFAPHLPYSCCEYVIRREGV 295

[Close]

BLAST of MELO3C004027 vs. NCBI nr
Match: gi|703149678|ref|XP_010109663.1| (DNA repair protein XRCC3-like protein [Morus notabilis])

HSP 1 Score: 391.7 bits (1005), Expect = 1.1e-105
Identity = 201/295 (68.14%), Postives = 235/295 (79.66%), Query Frame = 1


Query: 1   MTPENLLHLLQTTQKCTFGCPTIDRSVGGGIACSSLTEIVAESGCGKTQLCLQLSLCAQL 60
           ++PENLL   Q TQKCT GCP +DR +GGGI C+S+TE+VAES  GKTQ CLQL+L AQL
Sbjct: 4   ISPENLLRRPQPTQKCTLGCPVLDRCLGGGIPCNSMTELVAESASGKTQFCLQLALSAQL 63

Query: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSS--SYPQFSNPSDHIFVEPVHSAHQLF 120
           P S GGL+ASSLY+HTEFPFPFRRL QL +AF    S  +  +PSD++FV  VHSA QL 
Sbjct: 64  PPSRGGLSASSLYLHTEFPFPFRRLHQLRRAFCDRHSIGREFDPSDNVFVHAVHSADQLL 123

Query: 121 DIMPKIESSLENRNSHLPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISGKLKLLA 180
           D M KIES L  R    P+R+IVIDSIAALFRS+FDNTP DLKRRSSLFFKISGKLK L 
Sbjct: 124 DEMRKIESFLSERKPRFPVRVIVIDSIAALFRSEFDNTPFDLKRRSSLFFKISGKLKSLV 183

Query: 181 KKYSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSERRVCPALGLAWANCVNSRLFLS 240
            ++++AVV+TNQVVD MG + G+N LRIGNLK+L SSERRVCPALGLAWANCVNSRLFLS
Sbjct: 184 DRFNVAVVVTNQVVDFMGDNGGMNGLRIGNLKYLYSSERRVCPALGLAWANCVNSRLFLS 243

Query: 241 RNEEVVGEGEGMVN-GSELVQRRKTRRWLHVVFAPHLPKSSCEYVINREGVVGVE 293
           RNEEV+ E  G  N G+    RR+TRR +HV+FAPHLP+SS E+VI REGV GV+
Sbjct: 244 RNEEVIREENGSANAGNGDTLRRQTRRRIHVLFAPHLPESSTEFVIRREGVFGVD 298

[Close]

BLAST of MELO3C004027 vs. NCBI nr
Match: gi|1009105446|ref|XP_015873404.1| (PREDICTED: DNA repair protein XRCC3 homolog [Ziziphus jujuba])

HSP 1 Score: 388.3 bits (996), Expect = 1.2e-104
Identity = 199/295 (67.46%), Postives = 236/295 (80.00%), Query Frame = 1


Query: 1   MTPENLLHLLQTTQKCTFGCPTIDRSVGGGIACSSLTEIVAESGCGKTQLCLQLSLCAQL 60
           +TPENLL    TTQKCT GCP +DR + GGI C+S+TE+VAESGCGKTQLCLQL+L AQL
Sbjct: 3   VTPENLLRRPLTTQKCTLGCPVLDRCLAGGIPCNSITELVAESGCGKTQLCLQLALYAQL 62

Query: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFS-NPSDHIFVEPVHSAHQLFD 120
           PLSNGGL+AS+LYIHTEFPFPFRRLQQLS++F  S+P    NP D++FV  VHSA QL D
Sbjct: 63  PLSNGGLSASTLYIHTEFPFPFRRLQQLSRSFCYSHPDLRCNPCDNVFVHAVHSADQLLD 122

Query: 121 IMPKIESSLENRNSHLPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISGKLKLLAK 180
            MP IE+ L    + LPI+LIVIDSIAALFRS+FDNTP +LKRRSSLFFKISGKLK LAK
Sbjct: 123 TMPHIETFLSEPKAQLPIKLIVIDSIAALFRSEFDNTPFELKRRSSLFFKISGKLKSLAK 182

Query: 181 KYSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSERRVCPALGLAWANCVNSRLFLSR 240
           ++ L +V+TNQVVD +G+++G+N LR+GN   L SS RRVC ALGLAWANCVN+RLFLSR
Sbjct: 183 RFGLCIVVTNQVVDYIGANEGINGLRLGNFGSLYSSGRRVCAALGLAWANCVNTRLFLSR 242

Query: 241 NEEVVGEGEGM---VNGSELVQRRKTRRWLHVVFAPHLPKSSCEYVINREGVVGV 292
            EEV+GE + +    +G  L   R+TRR L VVFAPHLP  SCE+VI +EGV GV
Sbjct: 243 YEEVIGEDKDLKEVEDGDYLC--RQTRRQLSVVFAPHLPDCSCEFVIRKEGVFGV 295

The following BLAST results are available for this feature:

BLAST of MELO3C004027 vs. Swiss-Prot


Match Name	E-value	Identity	Description
XRCC3_ARATH	1.7e-98	61.74	DNA repair protein XRCC3 homolog OS=Arabidopsis thaliana GN=XRCC3 PE=1 SV=1	[more]
XRCC3_MOUSE	3.0e-34	34.77	DNA repair protein XRCC3 OS=Mus musculus GN=Xrcc3 PE=2 SV=1	[more]
XRCC3_HUMAN	8.1e-32	34.39	DNA repair protein XRCC3 OS=Homo sapiens GN=XRCC3 PE=1 SV=1	[more]
XRCC3_BOVIN	1.4e-31	33.33	DNA repair protein XRCC3 OS=Bos taurus GN=XRCC3 PE=2 SV=1	[more]
RA51B_HUMAN	1.1e-28	31.45	DNA repair protein RAD51 homolog 2 OS=Homo sapiens GN=RAD51B PE=1 SV=2	[more]

BLAST of MELO3C004027 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LK93_CUCSA	1.7e-161	97.95	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G058700 PE=4 SV=1	[more]
A0A067KJJ0_JATCU	3.1e-107	67.43	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08670 PE=4 SV=1	[more]
W9SDI8_9ROSA	7.7e-106	68.14	DNA repair protein XRCC3-like protein OS=Morus notabilis GN=L484_000769 PE=4 SV=...	[more]
B9T088_RICCO	2.3e-102	65.80	X-ray repair cross complementing protein 3, xrcc3, putative OS=Ricinus communis ...	[more]
F6GXG5_VITVI	8.8e-102	67.00	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0052g00940 PE=4 SV=...	[more]

BLAST of MELO3C004027 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G57450.1	9.6e-100	61.74	homolog of X-ray repair cross complementing 3 (XRCC3)	[more]
AT2G45280.2	1.5e-23	28.48	RAS associated with diabetes protein 51C	[more]
AT5G20850.1	2.1e-17	28.31	RAS associated with diabetes protein 51	[more]
AT3G22880.1	6.0e-17	30.73	DNA repair (Rad51) family protein	[more]
AT2G28560.1	2.3e-13	30.57	DNA repair (Rad51) family protein	[more]

BLAST of MELO3C004027 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659069773\|ref\|XP_008451720.1\|	2.3e-164	100.00	PREDICTED: DNA repair protein XRCC3 homolog [Cucumis melo]	[more]
gi\|449466133\|ref\|XP_004150781.1\|	2.4e-161	97.95	PREDICTED: DNA repair protein XRCC3 homolog [Cucumis sativus]	[more]
gi\|802608063\|ref\|XP_012074059.1\|	4.5e-107	67.43	PREDICTED: DNA repair protein XRCC3 homolog [Jatropha curcas]	[more]
gi\|703149678\|ref\|XP_010109663.1\|	1.1e-105	68.14	DNA repair protein XRCC3-like protein [Morus notabilis]	[more]
gi\|1009105446\|ref\|XP_015873404.1\|	1.2e-104	67.46	PREDICTED: DNA repair protein XRCC3 homolog [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013632	DNA_recomb/repair_Rad51_C
IPR016467	DNA_recomb/repair_RecA-like
IPR020588	RecA_ATP-bd
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0005524	ATP binding
GO:0008094	DNA-dependent ATPase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006281	DNA repair

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051276	chromosome organization
biological_process	GO:0006281	DNA repair
biological_process	GO:0042148	strand invasion
biological_process	GO:0010212	response to ionizing radiation
biological_process	GO:0007131	reciprocal meiotic recombination
biological_process	GO:0006312	mitotic recombination
biological_process	GO:0000724	double-strand break repair via homologous recombination
biological_process	GO:0006308	DNA catabolic process
biological_process	GO:0000707	meiotic DNA recombinase assembly
biological_process	GO:0045003	double-strand break repair via synthesis-dependent strand annealing
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0045132	meiotic chromosome segregation
biological_process	GO:0007127	meiosis I
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016020	membrane
cellular_component	GO:0033063	Rad51B-Rad51C-Rad51D-XRCC2 complex
cellular_component	GO:0005657	replication fork
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003684	damaged DNA binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0008094	DNA-dependent ATPase activity
molecular_function	GO:0003690	double-stranded DNA binding
molecular_function	GO:0004520	endodeoxyribonuclease activity
molecular_function	GO:0000400	four-way junction DNA binding
molecular_function	GO:0000150	recombinase activity
molecular_function	GO:0003697	single-stranded DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C004027T1	MELO3C004027T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013632	DNA recombination and repair protein Rad51, C-terminal	PFAM	PF08423	Rad51	coord: 11..289 score: 1.1
IPR016467	DNA recombination and repair protein, RecA-like	PIR	PIRSF005856	Rad51	coord: 1..293 score: 5.9
IPR020588	DNA recombination and repair protein RecA-like, ATP-binding domain	PROFILE	PS50162	RECA_2	coord: 12..191 score: 47
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	G3DSA:3.40.50.300		coord: 13..292 score: 4.6
IPR027417	P-loop containing nucleoside triphosphate hydrolase	unknown	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 15..289 score: 2.2
None	No IPR available	PRINTS	PR01874	DNAREPAIRADA	coord: 25..53 score: 7.1E-6coord: 143..167 score: 7.
None	No IPR available	PANTHER	PTHR22942	RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBER	coord: 1..292 score: 1.4E
None	No IPR available	PANTHER	PTHR22942:SF24	DNA REPAIR PROTEIN XRCC3	coord: 1..292 score: 1.4E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C004027	Csa2G058700	Cucumber (Chinese Long) v2	cumeB139
MELO3C004027	Cla022822	Watermelon (97103) v1	mewmB422
MELO3C004027	ClCG11G012170	Watermelon (Charleston Gray)	mewcgB367
MELO3C004027	Cla97C11G218070	Watermelon (97103) v2	mewmbB369
MELO3C004027	Bhi06G001127	Wax gourd	mewgoB453
MELO3C004027	CSPI02G06000	Wild cucumber (PI 183967)	cpimeB139
MELO3C004027	Cucsa.089370	Cucumber (Gy14) v1	cgymeB105
MELO3C004027	CmaCh12G008800	Cucurbita maxima (Rimu)	cmameB175
MELO3C004027	CmoCh12G008880	Cucurbita moschata (Rifu)	cmomeB164
MELO3C004027	Lsi11G007560	Bottle gourd (USVL1VR-Ls)	lsimeB115
MELO3C004027	Cp4.1LG07g07290	Cucurbita pepo (Zucchini)	cpemeB777
MELO3C004027	CsGy2G006120	Cucumber (Gy14) v2	cgybmeB120
MELO3C004027	Carg27565	Silver-seed gourd	carmeB0230
MELO3C004027	CsaV3_2G008370	Cucumber (Chinese Long) v3	cucmeB141

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C004027	Watermelon (97103) v2	mewmbB399
MELO3C004027	Wax gourd	mewgoB492
MELO3C004027	Melon (DHL92) v3.5.1	memeB110
MELO3C004027	Cucurbita maxima (Rimu)	cmameB075
MELO3C004027	Cucurbita maxima (Rimu)	cmameB737
MELO3C004027	Cucurbita moschata (Rifu)	cmomeB068
MELO3C004027	Cucurbita moschata (Rifu)	cmomeB725
MELO3C004027	Wild cucumber (PI 183967)	cpimeB074
MELO3C004027	Cucumber (Chinese Long) v2	cumeB075
MELO3C004027	Watermelon (Charleston Gray)	mewcgB397
MELO3C004027	Watermelon (97103) v1	mewmB440
MELO3C004027	Cucurbita pepo (Zucchini)	cpemeB100
MELO3C004027	Cucurbita pepo (Zucchini)	cpemeB103
MELO3C004027	Cucurbita pepo (Zucchini)	cpemeB344
MELO3C004027	Bottle gourd (USVL1VR-Ls)	lsimeB419
MELO3C004027	Cucumber (Gy14) v2	cgybmeB067
MELO3C004027	Silver-seed gourd	carmeB0062
MELO3C004027	Silver-seed gourd	carmeB0786
MELO3C004027	Cucumber (Chinese Long) v3	cucmeB080