Carg27565 (gene) Silver-seed gourd

Overview
NameCarg27565
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionDNA repair protein XRCC3 homolog
LocationCucurbita_argyrosperma_scaffold_441 : 19983 .. 20864 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGCCGGAAAATCTCCTCCATCTCCTTCAAACCACTCAAAAGTGCACCTTTGGATGTCCGATCATCGACCGCTCCGTCGGCGGCGGCGTCGCTTGCAACTCCCTCACCGAGATCGTCTCCGAGAGCGGCTGCGGTAAAACCCAGCTCTGCCTCCAACTCTGCCACTGCGCTCAGCTCCCCCTTTCCCTCGGCGGCCTCAACGCCGCCTCTCTCTATATCCACACCGAATTCCCTTTTCCCTTCCGCCGCCTTCAACAGCTCTCCCAAGCCTTTTCCTCGTCATACCCCCAAATTTCCAATCCCTCCGATCACATATTTGTCGAACCTGTTCACTCTGCACAACAACTGTTCGACATAATGCCTAAGATAGAATCCTTTCTTGCAAATCGTGATTCCCCTTTGCCCACCAGGCTAATTGTGATCGATTCAATTGCAGCATTGTTTCGGTCCGATTTCGATAACACCCCGTCTGATCTCAAGCGGAGATCGGCTCTGTTCTTCAAGATTTCTGGGAAGTTGAAGCTGTTGGCTAAGAGGTATTCTTTGGCTGTGGTGTTGACAAATCAGGTAGTTGATTTGATGGATTCTTCTGATGGTATAAATGCATTGAGAATTGGGAATTTGAAGTCTCTATGTTCATCGGGACGACGAGTTTGCCCGGCATTGGGGATCGCTTGGGCTAATTGTGTTAATTCGAGATTGTTTTTGTCAAGAAATGAGGAAGTTGTTGGAGAAGGTGATGGGGTGGTGAATAGTGGTGAATTAGCACAAAGAAGAACAAGAAGATGGCTTCATGTTGTTTTTGCACCTCACTTACCTAAATCATCTTGTGAGTATGTAATCAATAGACAAGGAGTTGTGGGAGTTGAAAGCCAATGA

mRNA sequence

ATGACGCCGGAAAATCTCCTCCATCTCCTTCAAACCACTCAAAAGTGCACCTTTGGATGTCCGATCATCGACCGCTCCGTCGGCGGCGGCGTCGCTTGCAACTCCCTCACCGAGATCGTCTCCGAGAGCGGCTGCGGTAAAACCCAGCTCTGCCTCCAACTCTGCCACTGCGCTCAGCTCCCCCTTTCCCTCGGCGGCCTCAACGCCGCCTCTCTCTATATCCACACCGAATTCCCTTTTCCCTTCCGCCGCCTTCAACAGCTCTCCCAAGCCTTTTCCTCGTCATACCCCCAAATTTCCAATCCCTCCGATCACATATTTGTCGAACCTGTTCACTCTGCACAACAACTGTTCGACATAATGCCTAAGATAGAATCCTTTCTTGCAAATCGTGATTCCCCTTTGCCCACCAGGCTAATTGTGATCGATTCAATTGCAGCATTGTTTCGGTCCGATTTCGATAACACCCCGTCTGATCTCAAGCGGAGATCGGCTCTGTTCTTCAAGATTTCTGGGAAGTTGAAGCTGTTGGCTAAGAGGTATTCTTTGGCTGTGGTGTTGACAAATCAGGTAGTTGATTTGATGGATTCTTCTGATGGTATAAATGCATTGAGAATTGGGAATTTGAAGTCTCTATGTTCATCGGGACGACGAGTTTGCCCGGCATTGGGGATCGCTTGGGCTAATTGTGTTAATTCGAGATTGTTTTTGTCAAGAAATGAGGAAGTTGTTGGAGAAGGTGATGGGGTGGTGAATAGTGGTGAATTAGCACAAAGAAGAACAAGAAGATGGCTTCATGTTGTTTTTGCACCTCACTTACCTAAATCATCTTGTGAGTATGTAATCAATAGACAAGGAGTTGTGGGAGTTGAAAGCCAATGA

Coding sequence (CDS)

ATGACGCCGGAAAATCTCCTCCATCTCCTTCAAACCACTCAAAAGTGCACCTTTGGATGTCCGATCATCGACCGCTCCGTCGGCGGCGGCGTCGCTTGCAACTCCCTCACCGAGATCGTCTCCGAGAGCGGCTGCGGTAAAACCCAGCTCTGCCTCCAACTCTGCCACTGCGCTCAGCTCCCCCTTTCCCTCGGCGGCCTCAACGCCGCCTCTCTCTATATCCACACCGAATTCCCTTTTCCCTTCCGCCGCCTTCAACAGCTCTCCCAAGCCTTTTCCTCGTCATACCCCCAAATTTCCAATCCCTCCGATCACATATTTGTCGAACCTGTTCACTCTGCACAACAACTGTTCGACATAATGCCTAAGATAGAATCCTTTCTTGCAAATCGTGATTCCCCTTTGCCCACCAGGCTAATTGTGATCGATTCAATTGCAGCATTGTTTCGGTCCGATTTCGATAACACCCCGTCTGATCTCAAGCGGAGATCGGCTCTGTTCTTCAAGATTTCTGGGAAGTTGAAGCTGTTGGCTAAGAGGTATTCTTTGGCTGTGGTGTTGACAAATCAGGTAGTTGATTTGATGGATTCTTCTGATGGTATAAATGCATTGAGAATTGGGAATTTGAAGTCTCTATGTTCATCGGGACGACGAGTTTGCCCGGCATTGGGGATCGCTTGGGCTAATTGTGTTAATTCGAGATTGTTTTTGTCAAGAAATGAGGAAGTTGTTGGAGAAGGTGATGGGGTGGTGAATAGTGGTGAATTAGCACAAAGAAGAACAAGAAGATGGCTTCATGTTGTTTTTGCACCTCACTTACCTAAATCATCTTGTGAGTATGTAATCAATAGACAAGGAGTTGTGGGAGTTGAAAGCCAATGA

Protein sequence

MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQLPLSLGGLNAASLYIHTEFPFPFRRLQQLSQAFSSSYPQISNPSDHIFVEPVHSAQQLFDIMPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKRYSLAVVLTNQVVDLMDSSDGINALRIGNLKSLCSSGRRVCPALGIAWANCVNSRLFLSRNEEVVGEGDGVVNSGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ
Homology
[Close]
BLAST of Carg27565 vs. NCBI nr
Match: XP_022938282.1 (DNA repair protein XRCC3 homolog [Cucurbita moschata])

HSP 1 Score: 585.9 bits (1509), Expect = 7.7e-164
Identity = 291/293 (99.32%), Postives = 291/293 (99.32%), Query Frame = 0 

Query: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQL 60
           MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQL 60

Query: 61  PLSLGGLNAASLYIHTEFPFPFRRLQQLSQAFSSSYPQISNPSDHIFVEPVHSAQQLFDI 120
           PLSLGGL AASLYIHTEFPFPFRRLQQLSQAFSSSYPQISNPSDHIFVEPVHSAQQLFDI
Sbjct: 61  PLSLGGLKAASLYIHTEFPFPFRRLQQLSQAFSSSYPQISNPSDHIFVEPVHSAQQLFDI 120

Query: 121 MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180
           MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR
Sbjct: 121 MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180

Query: 181 YSLAVVLTNQVVDLMDSSDGINALRIGNLKSLCSSGRRVCPALGIAWANCVNSRLFLSRN 240
           YSLAVVLTNQVVDLMDSSDGINALRIGNLKSLCSSGRRVCPALGIAWANCVNSRLFLSRN
Sbjct: 181 YSLAVVLTNQVVDLMDSSDGINALRIGNLKSLCSSGRRVCPALGIAWANCVNSRLFLSRN 240

Query: 241 EEVVGEGDGVVNSGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ 294
           EEVVGEGDGVVN GELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ
Sbjct: 241 EEVVGEGDGVVNGGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ 293

[Close]
BLAST of Carg27565 vs. NCBI nr
Match: XP_022969693.1 (DNA repair protein XRCC3 homolog [Cucurbita maxima])

HSP 1 Score: 576.2 bits (1484), Expect = 6.1e-161
Identity = 284/293 (96.93%), Postives = 289/293 (98.63%), Query Frame = 0 

Query: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQL 60
           MTPENLLHLLQTT+KCTFGCPIIDRSVGGGVACNSLTEIV+ESGCGKTQLCLQLCHCAQL
Sbjct: 1   MTPENLLHLLQTTRKCTFGCPIIDRSVGGGVACNSLTEIVAESGCGKTQLCLQLCHCAQL 60

Query: 61  PLSLGGLNAASLYIHTEFPFPFRRLQQLSQAFSSSYPQISNPSDHIFVEPVHSAQQLFDI 120
           PLSLGGLNA+SLYIHTEFPFPFRRLQQLSQAFSSSYPQ  NPSDHIFVEPVHSAQQLFDI
Sbjct: 61  PLSLGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFPNPSDHIFVEPVHSAQQLFDI 120

Query: 121 MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180
           MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR
Sbjct: 121 MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180

Query: 181 YSLAVVLTNQVVDLMDSSDGINALRIGNLKSLCSSGRRVCPALGIAWANCVNSRLFLSRN 240
           YSLAVVLTNQVVDL+DSSDGI+ALRIGNLKSLCSSGRRVCPALGI WANCVNSRLFLSRN
Sbjct: 181 YSLAVVLTNQVVDLLDSSDGISALRIGNLKSLCSSGRRVCPALGITWANCVNSRLFLSRN 240

Query: 241 EEVVGEGDGVVNSGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ 294
           EEVVGEGDGVVN GELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ
Sbjct: 241 EEVVGEGDGVVNGGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ 293

[Close]
BLAST of Carg27565 vs. NCBI nr
Match: XP_023538317.1 (DNA repair protein XRCC3 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 573.5 bits (1477), Expect = 4.0e-160
Identity = 285/293 (97.27%), Postives = 287/293 (97.95%), Query Frame = 0 

Query: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQL 60
           MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCH AQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHFAQL 60

Query: 61  PLSLGGLNAASLYIHTEFPFPFRRLQQLSQAFSSSYPQISNPSDHIFVEPVHSAQQLFDI 120
           PLSLGGLNA+SLYIHTEFPFPFRRLQQ SQAFSSSYPQ  NPSDHIFVEPVHSAQQLFDI
Sbjct: 61  PLSLGGLNASSLYIHTEFPFPFRRLQQFSQAFSSSYPQFPNPSDHIFVEPVHSAQQLFDI 120

Query: 121 MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180
           MPKIE FLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR
Sbjct: 121 MPKIEFFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180

Query: 181 YSLAVVLTNQVVDLMDSSDGINALRIGNLKSLCSSGRRVCPALGIAWANCVNSRLFLSRN 240
           YSLAVVLTNQVVDLMDSSDGI+ALRIGNLKSLCSSGRRVCPALGIAWANCVNSRLFLSRN
Sbjct: 181 YSLAVVLTNQVVDLMDSSDGISALRIGNLKSLCSSGRRVCPALGIAWANCVNSRLFLSRN 240

Query: 241 EEVVGEGDGVVNSGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ 294
           EEVVGEGDGVVN GELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ
Sbjct: 241 EEVVGEGDGVVNGGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ 293

[Close]
BLAST of Carg27565 vs. NCBI nr
Match: XP_004150781.1 (PREDICTED: DNA repair protein XRCC3 homolog [Cucumis sativus] >KGN61137.1 hypothetical protein Csa_2G058700 [Cucumis sativus])

HSP 1 Score: 530.0 bits (1364), Expect = 5.0e-147
Identity = 265/294 (90.14%), Postives = 278/294 (94.56%), Query Frame = 0 

Query: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQL 60
           MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVAC+SLTEIV+ESGCGKTQLCLQL  CAQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACSSLTEIVAESGCGKTQLCLQLSLCAQL 60

Query: 61  PLSLGGLNAASLYIHTEFPFPFRRLQQLSQAFSSSYPQISNPSDHIFVEPVHSAQQLFDI 120
           PLS GGLNA+SLYIHTEFPFPFRRLQQLSQAFSSSYPQ SNPSDHIFVEPVHSA QLFDI
Sbjct: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSDHIFVEPVHSAHQLFDI 120

Query: 121 MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180
           MPKIES L NR+S LP RLIVIDSIAALFRSDF+NTPSDLKRRS+LFFKISGKLKLLAK+
Sbjct: 121 MPKIESSLENRNSQLPIRLIVIDSIAALFRSDFNNTPSDLKRRSSLFFKISGKLKLLAKK 180

Query: 181 YSLAVVLTNQVVDLMDSSDGINALRIGNLKSLCSSGRRVCPALGIAWANCVNSRLFLSRN 240
           YSLAVVLTNQVVDLM SSDG+NALRIGNLK LCSS RRVCPALG+AWANCVNSRLFLSRN
Sbjct: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSERRVCPALGLAWANCVNSRLFLSRN 240

Query: 241 EEVVGEGDGVVNSGELAQ-RRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ 294
           EEVVGEG+G++N  EL Q RRTRRWLHVVFAPHLPKSSCEYVINR+GVVGVESQ
Sbjct: 241 EEVVGEGEGMMNGSELVQRRRTRRWLHVVFAPHLPKSSCEYVINREGVVGVESQ 294

[Close]
BLAST of Carg27565 vs. NCBI nr
Match: XP_008451720.1 (PREDICTED: DNA repair protein XRCC3 homolog [Cucumis melo])

HSP 1 Score: 528.5 bits (1360), Expect = 1.5e-146
Identity = 264/293 (90.10%), Postives = 276/293 (94.20%), Query Frame = 0 

Query: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQL 60
           MTPENLLHLLQTTQKCTFGCP IDRSVGGG+AC+SLTEIV+ESGCGKTQLCLQL  CAQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPTIDRSVGGGIACSSLTEIVAESGCGKTQLCLQLSLCAQL 60

Query: 61  PLSLGGLNAASLYIHTEFPFPFRRLQQLSQAFSSSYPQISNPSDHIFVEPVHSAQQLFDI 120
           PLS GGLNA+SLYIHTEFPFPFRRLQQLSQAFSSSYPQ SNPSDHIFVEPVHSA QLFDI
Sbjct: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSDHIFVEPVHSAHQLFDI 120

Query: 121 MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180
           MPKIES L NR+S LP RLIVIDSIAALFRSDFDNTPSDLKRRS+LFFKISGKLKLLAK+
Sbjct: 121 MPKIESSLENRNSHLPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISGKLKLLAKK 180

Query: 181 YSLAVVLTNQVVDLMDSSDGINALRIGNLKSLCSSGRRVCPALGIAWANCVNSRLFLSRN 240
           YSLAVVLTNQVVDLM SSDG+NALRIGNLK LCSS RRVCPALG+AWANCVNSRLFLSRN
Sbjct: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSERRVCPALGLAWANCVNSRLFLSRN 240

Query: 241 EEVVGEGDGVVNSGELAQRR-TRRWLHVVFAPHLPKSSCEYVINRQGVVGVES 293
           EEVVGEG+G+VN  EL QRR TRRWLHVVFAPHLPKSSCEYVINR+GVVGVES
Sbjct: 241 EEVVGEGEGMVNGSELVQRRKTRRWLHVVFAPHLPKSSCEYVINREGVVGVES 293

[Close]
BLAST of Carg27565 vs. TAIR10
Match: AT5G57450.1 (homolog of X-ray repair cross complementing 3 (XRCC3))

HSP 1 Score: 357.1 bits (915), Expect = 1.1e-98
Identity = 174/297 (58.59%), Postives = 223/297 (75.08%), Query Frame = 0 

Query: 3   PENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQLPL 62
           PENLL    T +K T GC I+D  + GG++C+SLTEIV+ESGCGKTQLCLQL  C QLP+
Sbjct: 8   PENLLRRSPTNRKLTTGCEILDGCLRGGISCDSLTEIVAESGCGKTQLCLQLSLCTQLPI 67

Query: 63  SLGGLNAASLYIHTEFPFPFRRLQQLSQAFSSSYPQI-----SNPSDHIFVEPVHSAQQL 122
           S GGLN +SLY+H+EFPFPFRRL QLS  F  S P I      NP DH+FV+ VHS   L
Sbjct: 68  SHGGLNGSSLYLHSEFPFPFRRLHQLSHTFHQSNPSIYANYNDNPCDHVFVQNVHSVDHL 127

Query: 123 FDIMPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLL 182
           FDIMP+I+ F+ N  +  P +LIV+DS+AALFRS+FDNTPSDLK+RS+LFFKISGKLK L
Sbjct: 128 FDIMPRIDGFVGNSKTRFPLKLIVLDSVAALFRSEFDNTPSDLKKRSSLFFKISGKLKQL 187

Query: 183 AKRYSLAVVLTNQVVDLMDSSDGINALRIGNLKSLCSSGRRVCPALGIAWANCVNSRLFL 242
           A ++ LA+V+TNQV DL+++SDG++ LRIGNL+ L SSGRRV P+LG+AWANCVNSR F+
Sbjct: 188 ASKFDLAIVITNQVTDLVETSDGLSGLRIGNLRYLYSSGRRVVPSLGLAWANCVNSRFFI 247

Query: 243 SRNEE--VVGEGDGVVNSGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVES 293
           SR++   V    +   N      R  +R L +VF+P+LP SSCE++I R+G+  V++
Sbjct: 248 SRSDGSIVKDRSEKDENCSSSVSRSAKRRLDIVFSPYLPGSSCEFMITREGICAVQA 304

[Close]
BLAST of Carg27565 vs. TAIR10
Match: AT2G45280.2 (RAS associated with diabetes protein 51C)

HSP 1 Score: 105.9 bits (263), Expect = 4.3e-23
Identity = 86/302 (28.48%), Postives = 144/302 (47.68%), Query Frame = 0 

Query: 5   NLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQLPLSL 64
           ++LH  ++  + T  C  +D  +GGG++C  +TEI    G GKTQ+ +QL    Q+P   
Sbjct: 118 DMLHEEESLPRITTSCSDLDNILGGGISCRDVTEIGGVPGIGKTQIGIQLSVNVQIPREC 177

Query: 65  GGLNAASLYIHTEFPFPFRRLQQLSQA---------------FSSSYPQISNPSD---HI 124
           GGL   ++YI TE  F   R  Q+++A               F ++  Q+  P D   +I
Sbjct: 178 GGLGGKAIYIDTEGSFMVERALQIAEACVEDMEEYTGYMHKHFQANQVQM-KPEDILENI 237

Query: 125 FVEPVHSAQQLFDIMPKIESFLA-NRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSA 184
           F   V S  +   ++  +E F++ N+D     +++++DSI   FR D+D    DL +R+ 
Sbjct: 238 FYFRVCSYTEQIALVNHLEKFISENKD----VKVVIVDSITFHFRQDYD----DLAQRTR 297

Query: 185 LFFKISGKLKLLAKRYSLAVVLTNQVVDLMDSSDGINALRIGNLKSLCSSGRRVCPALGI 244
           +  +++ K   LAK++SLAVVL NQV      S+G   L +               ALG 
Sbjct: 298 VLSEMALKFMKLAKKFSLAVVLLNQVTTKF--SEGSFQLAL---------------ALGD 357

Query: 245 AWANCVNSRLFLSRNEEVVGEGDGVVNSGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQ 288
           +W++   +R+ L  N      GD              R+ ++  +P LP +S  Y +  +
Sbjct: 358 SWSHSCTNRVILYWN------GD-------------ERYAYIDKSPSLPSASASYTVTSR 374

[Close]
BLAST of Carg27565 vs. TAIR10
Match: AT3G22880.1 (DNA repair (Rad51) family protein)

HSP 1 Score: 86.7 bits (213), Expect = 2.7e-17
Identity = 59/192 (30.73%), Postives = 99/192 (51.56%), Query Frame = 0 

Query: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQL 60
           MT  + L   ++  K T GC  +D  +GGG+  +++TE   E   GKTQL   LC   QL
Sbjct: 93  MTGSDALIKRKSVVKITTGCQALDDLLGGGIETSAITEAFGEFRSGKTQLAHTLCVTTQL 152

Query: 61  PLSLGGLNAASLYIHTEFPFPFRRLQQLSQAFSSSYPQISNPSDHIFVEPVHSAQQLFDI 120
           P ++ G N    YI TE  F   R+  +++ F      +    D+I     ++ +  +++
Sbjct: 153 PTNMKGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAV---LDNIIYARAYTYEHQYNL 212

Query: 121 MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180
           +      LA + S  P R++++DSI ALFR DF     +L  R     ++  +L  +A+ 
Sbjct: 213 L----LGLAAKMSEEPFRILIVDSIIALFRVDFTGR-GELADRQQKLAQMLSRLIKIAEE 272

Query: 181 YSLAVVLTNQVV 193
           +++AV +TNQV+
Sbjct: 273 FNVAVYMTNQVI 276

[Close]
BLAST of Carg27565 vs. TAIR10
Match: AT5G20850.1 (RAS associated with diabetes protein 51)

HSP 1 Score: 86.7 bits (213), Expect = 2.7e-17
Identity = 73/273 (26.74%), Postives = 120/273 (43.96%), Query Frame = 0 

Query: 17  TFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQLPLSLGGLNAASLYIHT 76
           T G   +D+ + GG+   S+TE+  E   GKTQLC  LC   QLP+  GG    ++YI  
Sbjct: 106 TSGSRELDKVLEGGIETGSITELYGEFRSGKTQLCHTLCVTCQLPMDQGGGEGKAMYIDA 165

Query: 77  EFPFPFRRLQQLSQAFSSSYPQISNPSDHIFVEPVHSAQQLFDIMPKIESFLANRDSPLP 136
           E  F  +RL Q++  F  +   +    +++     ++      ++ +  S +      + 
Sbjct: 166 EGTFRPQRLLQIADRFGLNGADV---LENVAYARAYNTDHQSRLLLEAASMM------IE 225

Query: 137 TR--LIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKRYSLAVVLTNQVVDL 196
           TR  L+++DS  AL+R+DF     +L  R     K    L+ LA  + +AVV+TNQVV  
Sbjct: 226 TRFALLIVDSATALYRTDFSGR-GELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQ 285

Query: 197 MDSSDGINALRIGNLKSLCSSGRRVCPALGIAWANCVNSRLFLSRNEEVVGEGDGVVNSG 256
           +D              S   +G +  P  G   A+   +RL L +               
Sbjct: 286 VDG-------------SALFAGPQFKPIGGNIMAHATTTRLALRKG-------------- 337

Query: 257 ELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGV 288
               R   R   V+ +P LP++   + I+ +GV
Sbjct: 346 ----RAEERICKVISSPCLPEAEARFQISTEGV 337

[Close]
BLAST of Carg27565 vs. TAIR10
Match: AT1G07745.1 (homolog of RAD51 D)

HSP 1 Score: 60.5 bits (145), Expect = 2.0e-09
Identity = 70/239 (29.29%), Postives = 98/239 (41.00%), Query Frame = 0 

Query: 8   HLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQLPLSLGGL 67
           H L T  K T      D  + GG     LTE+V  S  GKTQ C+Q    A   ++   L
Sbjct: 87  HTLSTGDKET------DSLLQGGFREGQLTELVGPSSSGKTQFCMQ----AAASVAENHL 146

Query: 68  NAASLYIHTEFPFPFRRLQQLSQAFSSSYPQISNPSDHIFVEPVHSAQQLFDIMPKIESF 127
               LY+ T   F  RR+ Q     SS           I    V+    LFD +  +E  
Sbjct: 147 GRV-LYLDTGNSFSARRIAQFI-CSSSDATLGQKVMSRILCHTVYDIYTLFDTLQDLEIT 206

Query: 128 LANR----DSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKRYSL 187
           L  +    +S L  RL+V+DSI++L       + S   +  AL   I   LK LA  +S+
Sbjct: 207 LRLQMNVNESRL--RLLVVDSISSLITPILGGSGS---QGRALMVAIGYLLKKLAHEHSI 266

Query: 188 AVVLTNQVVDLMDSSDGINALRIGNLKSLCSSGRRVCPALGIAWANCVNSRLFLSRNEE 243
           A+++TN  V                       G +  PALG  W +  + RL LSR+ +
Sbjct: 267 AILVTNHTV------------------GAGGEGGKTKPALGETWKSIPHVRLSLSRDHK 290

[Close]
BLAST of Carg27565 vs. Swiss-Prot
Match: sp|Q9FKM5|XRCC3_ARATH (DNA repair protein XRCC3 homolog OS=Arabidopsis thaliana OX=3702 GN=XRCC3 PE=1 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 1.9e-97
Identity = 174/297 (58.59%), Postives = 223/297 (75.08%), Query Frame = 0 

Query: 3   PENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQLPL 62
           PENLL    T +K T GC I+D  + GG++C+SLTEIV+ESGCGKTQLCLQL  C QLP+
Sbjct: 8   PENLLRRSPTNRKLTTGCEILDGCLRGGISCDSLTEIVAESGCGKTQLCLQLSLCTQLPI 67

Query: 63  SLGGLNAASLYIHTEFPFPFRRLQQLSQAFSSSYPQI-----SNPSDHIFVEPVHSAQQL 122
           S GGLN +SLY+H+EFPFPFRRL QLS  F  S P I      NP DH+FV+ VHS   L
Sbjct: 68  SHGGLNGSSLYLHSEFPFPFRRLHQLSHTFHQSNPSIYANYNDNPCDHVFVQNVHSVDHL 127

Query: 123 FDIMPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLL 182
           FDIMP+I+ F+ N  +  P +LIV+DS+AALFRS+FDNTPSDLK+RS+LFFKISGKLK L
Sbjct: 128 FDIMPRIDGFVGNSKTRFPLKLIVLDSVAALFRSEFDNTPSDLKKRSSLFFKISGKLKQL 187

Query: 183 AKRYSLAVVLTNQVVDLMDSSDGINALRIGNLKSLCSSGRRVCPALGIAWANCVNSRLFL 242
           A ++ LA+V+TNQV DL+++SDG++ LRIGNL+ L SSGRRV P+LG+AWANCVNSR F+
Sbjct: 188 ASKFDLAIVITNQVTDLVETSDGLSGLRIGNLRYLYSSGRRVVPSLGLAWANCVNSRFFI 247

Query: 243 SRNEE--VVGEGDGVVNSGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVES 293
           SR++   V    +   N      R  +R L +VF+P+LP SSCE++I R+G+  V++
Sbjct: 248 SRSDGSIVKDRSEKDENCSSSVSRSAKRRLDIVFSPYLPGSSCEFMITREGICAVQA 304

[Close]
BLAST of Carg27565 vs. Swiss-Prot
Match: sp|Q9CXE6|XRCC3_MOUSE (DNA repair protein XRCC3 OS=Mus musculus OX=10090 GN=Xrcc3 PE=2 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 3.2e-36
Identity = 104/298 (34.90%), Postives = 150/298 (50.34%), Query Frame = 0 

Query: 7   LHLLQTT-------QKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQ 66
           LHL Q         Q+ + GCP++D+ +GGG+    +T +   S  GKTQL LQLC   Q
Sbjct: 66  LHLFQQKESFPEQHQRLSLGCPVLDQFLGGGLPLEGITGLAGCSSAGKTQLALQLCLAVQ 125

Query: 67  LPLSLGGLNAASLYIHTEFPFPFRRLQQL---SQAFSSSYP----QISNPSDHIFVEPVH 126
            P   GGL A ++YI TE  FP +RL QL    +   +  P    +    S+HIF+E   
Sbjct: 126 FPRQYGGLEAGAVYICTEDAFPSKRLWQLIAQQRRLRTDAPEELIEKIRFSNHIFIEHAA 185

Query: 127 SAQQLFDIMPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISG 186
               L + + K    L +R      RL+V+DSIAA FR +F    S +  R+ L   +  
Sbjct: 186 DVDTLLECVSKKVPILLSRGM---ARLVVVDSIAAPFRCEFHLQASAI--RAKLLLSLGA 245

Query: 187 KLKLLAKRYSLAVVLTNQVVDLMDSSDGINALRIGNLKSLCSSGRRVCPALGIAWANCVN 246
            L+ L+  +   V+  NQV D+++    ++       +SL +S  R+ PALGI WAN + 
Sbjct: 246 TLRRLSSTFRSPVLCINQVTDMVEDQQSVS-------RSLGASEERLSPALGITWANQLL 305

Query: 247 SRLFLSRNEEVVGEGDGVVNSGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGV 291
            RL + R  E     D V        R   R L V+FAPHLP SSC Y ++ +G+ G+
Sbjct: 306 MRLMVDRTHE-----DDVTTG---LPRSPVRTLRVLFAPHLPLSSCCYTVSGEGIRGM 343

[Close]
BLAST of Carg27565 vs. Swiss-Prot
Match: sp|O43542|XRCC3_HUMAN (DNA repair protein XRCC3 OS=Homo sapiens OX=9606 GN=XRCC3 PE=1 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.8e-32
Identity = 100/283 (35.34%), Postives = 134/283 (47.35%), Query Frame = 0 

Query: 14  QKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQLPLSLGGLNAASLY 73
           Q+ + GCP++D  + GG+  + +TE+   S  GKTQL LQLC   Q P   GGL A ++Y
Sbjct: 80  QRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCLAVQFPRQHGGLEAGAVY 139

Query: 74  IHTEFPFPFRRLQQL---SQAFSSSYP----QISNPSDHIFVEPVHSAQQLFDIMPKIES 133
           I TE  FP +RLQQL        +  P    Q       IF+E V     L + + K   
Sbjct: 140 ICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQIFIEHVADVDTLLECVNKKVP 199

Query: 134 FLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKRYSLAVV 193
            L +R      RL+VIDS+AA FR +FD+  S  + R      +   L+ L+  +   V+
Sbjct: 200 VLLSRGM---ARLVVIDSVAAPFRCEFDSQASAPRARH--LQSLGATLRELSSAFQSPVL 259

Query: 194 LTNQVVDLMDSSDGINALRIGNLKSLCSSGRRVCPALGIAWANCVNSRLFLSRNEEVVGE 253
             NQV + M+     +         L     RV PALGI WAN +  RL   R  E    
Sbjct: 260 CINQVTEAMEEQGAAHG-------PLGFWDERVSPALGITWANQLLVRLLADRLRE---- 319

Query: 254 GDGVVNSGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVG 290
                   E A     R L V+ APHLP SSC Y I+ +GV G
Sbjct: 320 -------EEAALGCPARTLRVLSAPHLPPSSCSYTISAEGVRG 339

[Close]
BLAST of Carg27565 vs. Swiss-Prot
Match: sp|Q08DH8|XRCC3_BOVIN (DNA repair protein XRCC3 OS=Bos taurus OX=9913 GN=XRCC3 PE=2 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 4.1e-31
Identity = 104/299 (34.78%), Postives = 140/299 (46.82%), Query Frame = 0 

Query: 7   LHLL-------QTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQ 66
           LHLL       +  Q+ + GCP++D  + GG+  + +TE+   S  GKTQL LQLC   Q
Sbjct: 66  LHLLRQEGPFPEQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCLAVQ 125

Query: 67  LPLSLGGLNAASLYIHTEFPFPFRRLQQL---SQAFSSSYP--QISNP--SDHIFVEPVH 126
           LP   GGL A ++Y+ TE  FP RRLQQL    Q   +  P   IS       IF+E   
Sbjct: 126 LPPRHGGLGAGAVYVCTEDAFPSRRLQQLIAQQQRLRADVPGHVISKIRFGHQIFIEHAA 185

Query: 127 SAQQLFD-IMPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKIS 186
               L   +  K+   LA        RL+VIDS+AA FR +FD   + L  R+     + 
Sbjct: 186 DVDTLLQCVREKVPVLLARG----MARLVVIDSVAAPFRCEFDG--AALALRAQRLLALG 245

Query: 187 GKLKLLAKRYSLAVVLTNQVVDLMDSSDGINALRIGNLKSLCSSGRRVCPALGIAWANCV 246
            +L+ L+  +   V+  NQV + ++  D            L +    + PALGI WAN +
Sbjct: 246 AELRRLSCAFRSPVLCVNQVTEAVEEQD------------LVAGPPGMSPALGITWANQL 305

Query: 247 NSRLFLSRNEEVVGEGDGVVNSGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGV 291
             RL   R               E       R L VVFAPHLP SSC Y I  +GV G+
Sbjct: 306 LVRLLADRQ-----------RPEEAPLTPPGRTLRVVFAPHLPASSCSYTIAAEGVRGM 335

[Close]
BLAST of Carg27565 vs. Swiss-Prot
Match: sp|O15315|RA51B_HUMAN (DNA repair protein RAD51 homolog 2 OS=Homo sapiens OX=9606 GN=RAD51B PE=1 SV=2)

HSP 1 Score: 122.9 bits (307), Expect = 6.1e-27
Identity = 85/276 (30.80%), Postives = 139/276 (50.36%), Query Frame = 0 

Query: 23  IDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQLPLSLGGLNAASLYIHTEFPFPF 82
           +D ++ GGVAC SLTEI    GCGKTQ C+ +   A LP ++GGL  A +YI TE  F  
Sbjct: 90  LDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYIDTESAFSA 149

Query: 83  RRLQQLSQAFSSSYPQISNPSDHIFV--EPVHSAQQLF--DIMPKIESFLANRDSPLPTR 142
            RL ++++   S +P+  N  + + +    VH  ++L   +++ +IES L         +
Sbjct: 150 ERLVEIAE---SRFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIES-LEEEIISKGIK 209

Query: 143 LIVIDSIAALFRSDFD-NTPSDLKRRSALFFKISGKLKLLAKRYSLAVVLTNQVVD---- 202
           L+++DS+A++ R +FD     +LK R+    + +  LK LA+ +S+ V+LTNQ+      
Sbjct: 210 LVILDSVASVVRKEFDAQLQGNLKERNKFLAREASSLKYLAEEFSIPVILTNQITTHLSG 269

Query: 203 -LMDSSDGINALRIGNLKSLCSSGRRVCPALGIAWANCVNSRLFLSRNEEVVGEGDGVVN 262
            L   +D ++     +L    S    V  ALG  W++ VN+RL L   +           
Sbjct: 270 ALASQADLVSPADDLSLSEGTSGSSCVIAALGNTWSHSVNTRLILQYLDS---------- 329

Query: 263 SGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVV 289
                    RR + +  +P  P +S  Y I  +G+V
Sbjct: 330 --------ERRQILIAKSPLAPFTSFVYTIKEEGLV 343

[Close]
BLAST of Carg27565 vs. TrEMBL
Match: tr|A0A0A0LK93|A0A0A0LK93_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G058700 PE=4 SV=1)

HSP 1 Score: 530.0 bits (1364), Expect = 3.3e-147
Identity = 265/294 (90.14%), Postives = 278/294 (94.56%), Query Frame = 0 

Query: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQL 60
           MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVAC+SLTEIV+ESGCGKTQLCLQL  CAQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACSSLTEIVAESGCGKTQLCLQLSLCAQL 60

Query: 61  PLSLGGLNAASLYIHTEFPFPFRRLQQLSQAFSSSYPQISNPSDHIFVEPVHSAQQLFDI 120
           PLS GGLNA+SLYIHTEFPFPFRRLQQLSQAFSSSYPQ SNPSDHIFVEPVHSA QLFDI
Sbjct: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSDHIFVEPVHSAHQLFDI 120

Query: 121 MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180
           MPKIES L NR+S LP RLIVIDSIAALFRSDF+NTPSDLKRRS+LFFKISGKLKLLAK+
Sbjct: 121 MPKIESSLENRNSQLPIRLIVIDSIAALFRSDFNNTPSDLKRRSSLFFKISGKLKLLAKK 180

Query: 181 YSLAVVLTNQVVDLMDSSDGINALRIGNLKSLCSSGRRVCPALGIAWANCVNSRLFLSRN 240
           YSLAVVLTNQVVDLM SSDG+NALRIGNLK LCSS RRVCPALG+AWANCVNSRLFLSRN
Sbjct: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSERRVCPALGLAWANCVNSRLFLSRN 240

Query: 241 EEVVGEGDGVVNSGELAQ-RRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ 294
           EEVVGEG+G++N  EL Q RRTRRWLHVVFAPHLPKSSCEYVINR+GVVGVESQ
Sbjct: 241 EEVVGEGEGMMNGSELVQRRRTRRWLHVVFAPHLPKSSCEYVINREGVVGVESQ 294

[Close]
BLAST of Carg27565 vs. TrEMBL
Match: tr|A0A1S3BRJ5|A0A1S3BRJ5_CUCME (DNA repair protein XRCC3 homolog OS=Cucumis melo OX=3656 GN=LOC103492927 PE=4 SV=1)

HSP 1 Score: 528.5 bits (1360), Expect = 9.7e-147
Identity = 264/293 (90.10%), Postives = 276/293 (94.20%), Query Frame = 0 

Query: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQL 60
           MTPENLLHLLQTTQKCTFGCP IDRSVGGG+AC+SLTEIV+ESGCGKTQLCLQL  CAQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPTIDRSVGGGIACSSLTEIVAESGCGKTQLCLQLSLCAQL 60

Query: 61  PLSLGGLNAASLYIHTEFPFPFRRLQQLSQAFSSSYPQISNPSDHIFVEPVHSAQQLFDI 120
           PLS GGLNA+SLYIHTEFPFPFRRLQQLSQAFSSSYPQ SNPSDHIFVEPVHSA QLFDI
Sbjct: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSDHIFVEPVHSAHQLFDI 120

Query: 121 MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180
           MPKIES L NR+S LP RLIVIDSIAALFRSDFDNTPSDLKRRS+LFFKISGKLKLLAK+
Sbjct: 121 MPKIESSLENRNSHLPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISGKLKLLAKK 180

Query: 181 YSLAVVLTNQVVDLMDSSDGINALRIGNLKSLCSSGRRVCPALGIAWANCVNSRLFLSRN 240
           YSLAVVLTNQVVDLM SSDG+NALRIGNLK LCSS RRVCPALG+AWANCVNSRLFLSRN
Sbjct: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSERRVCPALGLAWANCVNSRLFLSRN 240

Query: 241 EEVVGEGDGVVNSGELAQRR-TRRWLHVVFAPHLPKSSCEYVINRQGVVGVES 293
           EEVVGEG+G+VN  EL QRR TRRWLHVVFAPHLPKSSCEYVINR+GVVGVES
Sbjct: 241 EEVVGEGEGMVNGSELVQRRKTRRWLHVVFAPHLPKSSCEYVINREGVVGVES 293

[Close]
BLAST of Carg27565 vs. TrEMBL
Match: tr|A0A2P4LUX7|A0A2P4LUX7_QUESU (Dna repair protein xrcc3 like OS=Quercus suber OX=58331 GN=CFP56_14949 PE=4 SV=1)

HSP 1 Score: 425.6 bits (1093), Expect = 8.8e-116
Identity = 215/298 (72.15%), Postives = 250/298 (83.89%), Query Frame = 0 

Query: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQL 60
           MTPENLLH L +T+KCTFGCP++DR +GGG+ CNS+TE+V+ESGCGKTQLCLQL   AQL
Sbjct: 1   MTPENLLHRLPSTRKCTFGCPVLDRCLGGGIPCNSITELVAESGCGKTQLCLQLALSAQL 60

Query: 61  PLSLGGLNAASLYIHTEFPFPFRRLQQLSQAFSSSYPQISN--PSDHIFVEPVHSAQQLF 120
           P SLGGL+A+SLYIHTEF FP RRL QLS AF SS+P+I N  P D IFV  V+SA QLF
Sbjct: 61  PPSLGGLSASSLYIHTEFSFPSRRLHQLSHAFISSHPRIFNNDPCDRIFVHAVYSADQLF 120

Query: 121 DIMPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLA 180
           DIMPKIESFL N ++ LP +LIVIDSIAALFRS+F+NTP +LKRRS+LFFKISGKLK LA
Sbjct: 121 DIMPKIESFLENINTQLPVKLIVIDSIAALFRSEFENTPIELKRRSSLFFKISGKLKSLA 180

Query: 181 KRYSLAVVLTNQVVDLMDSSDGINALRIGNLKSLCSSGRRVCPALGIAWANCVNSRLFLS 240
           KR+ LAVV+TNQVVDLM  S+G+N L++GNL SL SSGRRVCPALG+AWANCVNSRLFLS
Sbjct: 181 KRFGLAVVVTNQVVDLMGHSEGMNGLKVGNLGSLVSSGRRVCPALGLAWANCVNSRLFLS 240

Query: 241 RNEEVVGEGDGVVN-----SGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVE 292
           RNEEVVGE +G V+      G+   R+TRR L+VVFAPHLP SSCE+VI R+GV GVE
Sbjct: 241 RNEEVVGEENGSVDVSACGGGDFLPRQTRRRLYVVFAPHLPDSSCEFVIRREGVFGVE 298

[Close]
BLAST of Carg27565 vs. TrEMBL
Match: tr|A0A2N9E2I4|A0A2N9E2I4_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS999 PE=4 SV=1)

HSP 1 Score: 412.1 bits (1058), Expect = 1.0e-111
Identity = 210/298 (70.47%), Postives = 243/298 (81.54%), Query Frame = 0 

Query: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQL 60
           MTPENLL     TQKCT GCP++DR +GGG+ CNS+TE+V+ESGCGKTQLCLQL   AQL
Sbjct: 1   MTPENLLQRPLATQKCTLGCPVLDRCLGGGIPCNSITELVAESGCGKTQLCLQLALSAQL 60

Query: 61  PLSLGGLNAASLYIHTEFPFPFRRLQQLSQAFSSSYPQI--SNPSDHIFVEPVHSAQQLF 120
           P SLGGL+A+SLYIHTEF FP RRL QLS AF SS+P I  ++P D IFV  V+SA  LF
Sbjct: 61  PPSLGGLSASSLYIHTEFSFPSRRLHQLSHAFRSSHPLIFGNDPCDSIFVHAVYSADHLF 120

Query: 121 DIMPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLA 180
           DIMPKIESFLAN  +  P +LIVIDSIAALFRSDF+NTP +LKRRS+LFFKISGKLK LA
Sbjct: 121 DIMPKIESFLANPRTQFPVKLIVIDSIAALFRSDFENTPVELKRRSSLFFKISGKLKSLA 180

Query: 181 KRYSLAVVLTNQVVDLMDSSDGINALRIGNLKSLCSSGRRVCPALGIAWANCVNSRLFLS 240
           KR+ LAVV+TNQVVDL+  S+G+N L++GNL SL SSGRRVC ALG++WANCVNSRLFLS
Sbjct: 181 KRFGLAVVVTNQVVDLVGPSEGLNGLKVGNLASLVSSGRRVCAALGLSWANCVNSRLFLS 240

Query: 241 RNEEVVGEGDGVV-----NSGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVE 292
           RNEEVVGE +G+V       G+   RRTRR LHVVFAPHLP+SSCE+VI R+ V GVE
Sbjct: 241 RNEEVVGEENGLVVDVNACGGDFVPRRTRRRLHVVFAPHLPESSCEFVITRERVFGVE 298

[Close]
BLAST of Carg27565 vs. TrEMBL
Match: tr|A0A067KJJ0|A0A067KJJ0_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_08670 PE=4 SV=1)

HSP 1 Score: 403.7 bits (1036), Expect = 3.6e-109
Identity = 204/303 (67.33%), Postives = 236/303 (77.89%), Query Frame = 0 

Query: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQL 60
           MTP NLL      QKCTFGCPI+DR + GGV CNS+TEIV+ESG GKTQLCLQL  CAQL
Sbjct: 1   MTPHNLLQHPFPAQKCTFGCPILDRCLSGGVPCNSITEIVAESGSGKTQLCLQLSLCAQL 60

Query: 61  PLSLGGLNAASLYIHTEFPFPFRRLQQLSQAFSSSYPQI------------SNPSDHIFV 120
           P+S+GGL+A+SLY++TEFPFPFRRL QLS +F S YPQI             NP D+I+V
Sbjct: 61  PVSIGGLSASSLYLYTEFPFPFRRLNQLSHSFQSLYPQIFINDSDSTNNKSYNPCDNIYV 120

Query: 121 EPVHSAQQLFDIMPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFF 180
           + VHSA QLFDIMPKIESFL N  + LP RLIVIDS+AALFRS+F+NTPSDLKRRS+LFF
Sbjct: 121 QSVHSADQLFDIMPKIESFLLNSKTQLPMRLIVIDSVAALFRSEFENTPSDLKRRSSLFF 180

Query: 181 KISGKLKLLAKRYSLAVVLTNQVVDLMDSSDGINALRIGNLKSLCSSGRRVCPALGIAWA 240
           KISGKLK LA R+ LAVV+TNQVVD M S +G+N +RIGNL SLCSSGRRVCPALG+AWA
Sbjct: 181 KISGKLKALAARFDLAVVVTNQVVDFMGSGEGVNGVRIGNLGSLCSSGRRVCPALGLAWA 240

Query: 241 NCVNSRLFLSRNEEVVGEGDGVVNSGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVV 292
           NCVN RLFL+R++     G         A  +TRRWLHVVFAPHLP S CEYVI R+GV 
Sbjct: 241 NCVNLRLFLARDDTGAESG--------FACCQTRRWLHVVFAPHLPYSCCEYVIRREGVF 295

The following BLAST results are available for this feature:
BLAST of Carg27565 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022938282.17.7e-16499.32DNA repair protein XRCC3 homolog [Cucurbita moschata][more]
XP_022969693.16.1e-16196.93DNA repair protein XRCC3 homolog [Cucurbita maxima][more]
XP_023538317.14.0e-16097.27DNA repair protein XRCC3 homolog [Cucurbita pepo subsp. pepo][more]
XP_004150781.15.0e-14790.14PREDICTED: DNA repair protein XRCC3 homolog [Cucumis sativus] >KGN61137.1 hypoth... [more]
XP_008451720.11.5e-14690.10PREDICTED: DNA repair protein XRCC3 homolog [Cucumis melo][more]
BLAST of Carg27565 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G57450.11.1e-9858.59homolog of X-ray repair cross complementing 3 (XRCC3)[more]
AT2G45280.24.3e-2328.48RAS associated with diabetes protein 51C[more]
AT3G22880.12.7e-1730.73DNA repair (Rad51) family protein[more]
AT5G20850.12.7e-1726.74RAS associated with diabetes protein 51[more]
AT1G07745.12.0e-0929.29homolog of RAD51 D[more]
BLAST of Carg27565 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9FKM5|XRCC3_ARATH1.9e-9758.59DNA repair protein XRCC3 homolog OS=Arabidopsis thaliana OX=3702 GN=XRCC3 PE=1 S... [more]
sp|Q9CXE6|XRCC3_MOUSE3.2e-3634.90DNA repair protein XRCC3 OS=Mus musculus OX=10090 GN=Xrcc3 PE=2 SV=1[more]
sp|O43542|XRCC3_HUMAN2.8e-3235.34DNA repair protein XRCC3 OS=Homo sapiens OX=9606 GN=XRCC3 PE=1 SV=1[more]
sp|Q08DH8|XRCC3_BOVIN4.1e-3134.78DNA repair protein XRCC3 OS=Bos taurus OX=9913 GN=XRCC3 PE=2 SV=1[more]
sp|O15315|RA51B_HUMAN6.1e-2730.80DNA repair protein RAD51 homolog 2 OS=Homo sapiens OX=9606 GN=RAD51B PE=1 SV=2[more]
BLAST of Carg27565 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LK93|A0A0A0LK93_CUCSA3.3e-14790.14Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G058700 PE=4 SV=1[more]
tr|A0A1S3BRJ5|A0A1S3BRJ5_CUCME9.7e-14790.10DNA repair protein XRCC3 homolog OS=Cucumis melo OX=3656 GN=LOC103492927 PE=4 SV... [more]
tr|A0A2P4LUX7|A0A2P4LUX7_QUESU8.8e-11672.15Dna repair protein xrcc3 like OS=Quercus suber OX=58331 GN=CFP56_14949 PE=4 SV=1[more]
tr|A0A2N9E2I4|A0A2N9E2I4_FAGSY1.0e-11170.47Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS999 PE=4 SV=1[more]
tr|A0A067KJJ0|A0A067KJJ0_JATCU3.6e-10967.33Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_08670 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008094DNA-dependent ATPase activity
GO:0005524ATP binding
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR033925Rad51_DMC1_RadA
IPR020588RecA_ATP-bd
IPR013632DNA_recomb/repair_Rad51_C
IPR016467DNA_recomb/repair_RecA-like
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006281 DNA repair
cellular_component GO:0005575 cellular_component
molecular_function GO:0005524 ATP binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0008094 DNA-dependent ATPase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg27565-RACarg27565-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01874DNAREPAIRADAcoord: 143..167
score: 19.49
coord: 25..53
score: 41.29
NoneNo IPR availableGENE3DG3DSA:3.40.50.300coord: 1..292
e-value: 5.9E-62
score: 211.5
NoneNo IPR availablePANTHERPTHR22942:SF24DNA REPAIR PROTEIN XRCC3coord: 11..291
NoneNo IPR availablePANTHERPTHR22942RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBERcoord: 11..291
IPR016467DNA recombination and repair protein, RecA-likePIRSFPIRSF005856Rad51coord: 1..293
e-value: 4.3E-51
score: 171.8
IPR013632DNA recombination and repair protein Rad51-like, C-terminalPFAMPF08423Rad51coord: 12..288
e-value: 1.5E-42
score: 145.6
IPR020588DNA recombination and repair protein RecA-like, ATP-binding domainPROSITEPS50162RECA_2coord: 12..191
score: 43.791
IPR033925Rad51/DMC1/RadACDDcd01123Rad51_DMC1_radAcoord: 17..288
e-value: 8.18918E-81
score: 245.956
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILYSSF52540P-loop containing nucleoside triphosphate hydrolasescoord: 15..288