MELO3C003749 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C003749
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Potassium voltage-gated channel subfamily H member 7
Location	chr4 : 3852756 .. 3853212 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTGCGTATCAGATTCTGTGTCTATTTTGCATATTGTTACACCAAGAAGTAAAAGAAAAGCTTCTAACCTGAAAAGACCATGAGTTGGGTGGTGGAGGAAAGAGGTCCCGAGTGGAAGTATGGATGGACTGAGAGAAAAATGGCTTCCATGTCTCTCCCGCCTATGCCGCTGCTCGCATTCCTCGGCGTCGTCGTTCTTTTGCTTTCTTTGCAGTCTCAGCAGATGGTGTTGGATTTCAAGCTATTACTTTTGGCTTTGCCATTTTTTATTATCTTTTTTGCAAATTCTGTAGCTGTGTCTGGTACAGTTGGTTCTGCTGCCATGAGAACTAAGAGCAGGTCGGCTCAGGAGGCCGAGAGGACCTCACCTTGGGGCGCCGCGGTGTTGCTATTTCTGCTGCTGATATTGCTGTGGAATCGTCCTTACTTTAGGTCCAAGTGGTCACCTCCGTCCTAA

mRNA sequence

TTTGCGTATCAGATTCTGTGTCTATTTTGCATATTGTTACACCAAGAAGTAAAAGAAAAGCTTCTAACCTGAAAAGACCATGAGTTGGGTGGTGGAGGAAAGAGGTCCCGAGTGGAAGTATGGATGGACTGAGAGAAAAATGGCTTCCATGTCTCTCCCGCCTATGCCGCTGCTCGCATTCCTCGGCGTCGTCGTTCTTTTGCTTTCTTTGCAGTCTCAGCAGATGGTGTTGGATTTCAAGCTATTACTTTTGGCTTTGCCATTTTTTATTATCTTTTTTGCAAATTCTGTAGCTGTGTCTGGTACAGTTGGTTCTGCTGCCATGAGAACTAAGAGCAGGTCGGCTCAGGAGGCCGAGAGGACCTCACCTTGGGGCGCCGCGGTGTTGCTATTTCTGCTGCTGATATTGCTGTGGAATCGTCCTTACTTTAGGTCCAAGTGGTCACCTCCGTCCTAA

Coding sequence (CDS)

ATGAGTTGGGTGGTGGAGGAAAGAGGTCCCGAGTGGAAGTATGGATGGACTGAGAGAAAAATGGCTTCCATGTCTCTCCCGCCTATGCCGCTGCTCGCATTCCTCGGCGTCGTCGTTCTTTTGCTTTCTTTGCAGTCTCAGCAGATGGTGTTGGATTTCAAGCTATTACTTTTGGCTTTGCCATTTTTTATTATCTTTTTTGCAAATTCTGTAGCTGTGTCTGGTACAGTTGGTTCTGCTGCCATGAGAACTAAGAGCAGGTCGGCTCAGGAGGCCGAGAGGACCTCACCTTGGGGCGCCGCGGTGTTGCTATTTCTGCTGCTGATATTGCTGTGGAATCGTCCTTACTTTAGGTCCAAGTGGTCACCTCCGTCCTAA

Protein sequence

MSWVVEERGPEWKYGWTERKMASMSLPPMPLLAFLGVVVLLLSLQSQQMVLDFKLLLLALPFFIIFFANSVAVSGTVGSAAMRTKSRSAQEAERTSPWGAAVLLFLLLILLWNRPYFRSKWSPPS*

Homology

[Close]

BLAST of MELO3C003749 vs. TrEMBL
Match: A0A0A0LE80_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G872200 PE=4 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 1.9e-61
Identity = 120/125 (96.00%), Postives = 123/125 (98.40%), Query Frame = 1


Query: 1   MSWVVEERGPEWKYGWTERKMASMSLPPMPLLAFLGVVVLLLSLQSQQMVLDFKLLLLAL 60
           MSWVVEERGPEWKYGWTERKM+SMSLPPMPLLAFLGVVVLLLSLQSQQMVLDFKLLLLAL
Sbjct: 1   MSWVVEERGPEWKYGWTERKMSSMSLPPMPLLAFLGVVVLLLSLQSQQMVLDFKLLLLAL 60

Query: 61  PFFIIFFANSVAVSGTVGSAAMRTKSRSAQEAERTSPWGAAVLLFLLLILLWNRPYFRSK 120
           PF +IF ANSVAVSGTVGSA+MRTKSRSAQEAERTSPWGAAVLLFLLLILLWNRPYFRSK
Sbjct: 61  PFLMIFVANSVAVSGTVGSASMRTKSRSAQEAERTSPWGAAVLLFLLLILLWNRPYFRSK 120

Query: 121 WSPPS 126
           WSPPS
Sbjct: 121 WSPPS 125

[Close]

BLAST of MELO3C003749 vs. TrEMBL
Match: W9RNV3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_016054 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 4.6e-23
Identity = 62/134 (46.27%), Postives = 83/134 (61.94%), Query Frame = 1


Query: 1   MSWVVEE--RGPEWKYGWTERKMASMSLPPMPLLAFLGVVVLLLSL--------QSQQMV 60
           M W++ E   G  WK GWTER +AS++ PP+PLLA +G+VV+LLS+        Q Q+ V
Sbjct: 1   MGWLIREDRSGSSWKLGWTERTLASLTAPPLPLLAIVGIVVVLLSVSSYANYKSQMQKTV 60

Query: 61  LDFKLLLLALPFFIIFFANSVAVSGTVGSAAMRTKSRSAQEAERTSPWGAAVLLFLLLIL 120
           + F+L LL LP  +IF A+SV   GTV     RTK  +  E   T PWG  VLL +L +L
Sbjct: 61  IGFRLFLLLLPLVLIFVAHSVTKYGTVLVVRPRTKHEAVSEGGGT-PWGVVVLLVVLAVL 120

Query: 121 LWNRPYFRSKWSPP 125
           +  + YF+SKW PP
Sbjct: 121 ISYQSYFQSKWWPP 133

[Close]

BLAST of MELO3C003749 vs. TrEMBL
Match: A0A0A0LNS9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G368800 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.9e-21
Identity = 59/135 (43.70%), Postives = 81/135 (60.00%), Query Frame = 1


Query: 1   MSWVVEER-GPEWKYGWTERKMASMSLPPMPLLAFLGVVVLLLSLQS--------QQMVL 60
           M W++ ER GP WK GW E+ ++S++ PP PLLA LG++V+LLS+ S        ++  +
Sbjct: 1   MGWLIRERRGPAWKQGWAEQALSSITPPPRPLLAILGILVILLSVSSYSSYRSQVKKTRI 60

Query: 61  DFKLLLLALPFFIIFFANSVAVSGTVGSAAMRTKSRS---AQEAERTSPWGAAVLLFLLL 120
           +FKL  L LP   +F  NS+   G +     RTK       + A   SPWGAAVLL +LL
Sbjct: 61  NFKLFFLLLPLVFVFVGNSIVRYGRLVIITPRTKLEPVYVTEGAASASPWGAAVLLVVLL 120

Query: 121 ILLWNRPYFRSKWSP 124
           +LL  +PYF SKW P
Sbjct: 121 VLLSYQPYFHSKWFP 135

[Close]

BLAST of MELO3C003749 vs. TrEMBL
Match: B9GQV0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s02370g PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 9.8e-18
Identity = 53/132 (40.15%), Postives = 78/132 (59.09%), Query Frame = 1


Query: 1   MSWVVEE-RGPEWKYGWTERKMASMSLPPMPLLAFLGVVVLLLSL--------QSQQMVL 60
           M+W+++  RGP WK  WT+R +AS+SLPP PL+A   +++LLLS+        Q Q  ++
Sbjct: 1   MAWLLKHTRGPAWKQEWTQRTLASLSLPPFPLVAIFFIIILLLSVSSFMSYKNQMQHALI 60

Query: 61  DFKLLLLALPFFIIFFANSVAVSGTVGSAAMRTKSRSAQEAERTSPWGAAVLLFLLLILL 120
           +FKLLLL LP  +IF A   +   T      + +  SA       PWG AVL+ +LL+++
Sbjct: 61  NFKLLLLFLPVLLIFLAMFASKVETFMFPNTKAQYGSADNRSWNLPWGLAVLVVVLLVMV 120

Query: 121 WNRPYFRSKWSP 124
             R  F+S WSP
Sbjct: 121 NYRSSFQSMWSP 132

[Close]

BLAST of MELO3C003749 vs. TrEMBL
Match: A0A061FCF7_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_034228 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.9e-17
Identity = 52/131 (39.69%), Postives = 73/131 (55.73%), Query Frame = 1


Query: 1   MSWVVEERGPEWKYGWTERKMASMSLPPMPLLAFLGVVVLLLSLQS--------QQMVLD 60
           M W  +ERGP WK GWTE+ + S+S PP+PLL+  G++ LLL + S           +L+
Sbjct: 1   MGWFFKERGPGWKQGWTEQVITSISPPPLPLLSIFGIICLLLLVSSYVSFKKEIHHSMLN 60

Query: 61  FKLLLLALPFFIIFFANSVAVSGTVGSAAMRTKSRSAQEAERTSPWGAAVLLFLLLILLW 120
            KL LL LP  +IF A  V+          +TK R  +   R  PWG  +LL +LL+++ 
Sbjct: 61  LKLFLLFLPLVLIFAAQFVSKCERFVIPYAKTK-RELEYRTRNLPWGMVMLLVVLLVMVS 120

Query: 121 NRPYFRSKWSP 124
            + YF S WSP
Sbjct: 121 YQSYFHSMWSP 130

[Close]

BLAST of MELO3C003749 vs. NCBI nr
Match: gi|700204905|gb|KGN60038.1| (hypothetical protein Csa_3G872200 [Cucumis sativus])

HSP 1 Score: 243.0 bits (619), Expect = 2.7e-61
Identity = 120/125 (96.00%), Postives = 123/125 (98.40%), Query Frame = 1


Query: 1   MSWVVEERGPEWKYGWTERKMASMSLPPMPLLAFLGVVVLLLSLQSQQMVLDFKLLLLAL 60
           MSWVVEERGPEWKYGWTERKM+SMSLPPMPLLAFLGVVVLLLSLQSQQMVLDFKLLLLAL
Sbjct: 1   MSWVVEERGPEWKYGWTERKMSSMSLPPMPLLAFLGVVVLLLSLQSQQMVLDFKLLLLAL 60

Query: 61  PFFIIFFANSVAVSGTVGSAAMRTKSRSAQEAERTSPWGAAVLLFLLLILLWNRPYFRSK 120
           PF +IF ANSVAVSGTVGSA+MRTKSRSAQEAERTSPWGAAVLLFLLLILLWNRPYFRSK
Sbjct: 61  PFLMIFVANSVAVSGTVGSASMRTKSRSAQEAERTSPWGAAVLLFLLLILLWNRPYFRSK 120

Query: 121 WSPPS 126
           WSPPS
Sbjct: 121 WSPPS 125

[Close]

BLAST of MELO3C003749 vs. NCBI nr
Match: gi|703129815|ref|XP_010104455.1| (hypothetical protein L484_016054 [Morus notabilis])

HSP 1 Score: 115.5 bits (288), Expect = 6.5e-23
Identity = 62/134 (46.27%), Postives = 83/134 (61.94%), Query Frame = 1


Query: 1   MSWVVEE--RGPEWKYGWTERKMASMSLPPMPLLAFLGVVVLLLSL--------QSQQMV 60
           M W++ E   G  WK GWTER +AS++ PP+PLLA +G+VV+LLS+        Q Q+ V
Sbjct: 1   MGWLIREDRSGSSWKLGWTERTLASLTAPPLPLLAIVGIVVVLLSVSSYANYKSQMQKTV 60

Query: 61  LDFKLLLLALPFFIIFFANSVAVSGTVGSAAMRTKSRSAQEAERTSPWGAAVLLFLLLIL 120
           + F+L LL LP  +IF A+SV   GTV     RTK  +  E   T PWG  VLL +L +L
Sbjct: 61  IGFRLFLLLLPLVLIFVAHSVTKYGTVLVVRPRTKHEAVSEGGGT-PWGVVVLLVVLAVL 120

Query: 121 LWNRPYFRSKWSPP 125
           +  + YF+SKW PP
Sbjct: 121 ISYQSYFQSKWWPP 133

[Close]

BLAST of MELO3C003749 vs. NCBI nr
Match: gi|659088113|ref|XP_008444809.1| (PREDICTED: uncharacterized protein LOC103488045 [Cucumis melo])

HSP 1 Score: 110.2 bits (274), Expect = 2.7e-21
Identity = 59/135 (43.70%), Postives = 81/135 (60.00%), Query Frame = 1


Query: 1   MSWVVEER-GPEWKYGWTERKMASMSLPPMPLLAFLGVVVLLLSLQS--------QQMVL 60
           M W++ ER GP WK GW E+ ++S++ PP PLLA LG++V+LLS+ S        ++  +
Sbjct: 21  MGWLIRERRGPAWKQGWAEQALSSITPPPRPLLAILGILVILLSVSSYSSYRSQVKKTRI 80

Query: 61  DFKLLLLALPFFIIFFANSVAVSGTVGSAAMRTKSRS---AQEAERTSPWGAAVLLFLLL 120
           +FKL  L LP   +F  NS+   G +     RTK       + A   SPWGAAVLL +LL
Sbjct: 81  NFKLFFLLLPLVFVFVGNSIVRYGRLVIITPRTKLEPVYVTEGAASASPWGAAVLLVVLL 140

Query: 121 ILLWNRPYFRSKWSP 124
           +LL  +PYF SKW P
Sbjct: 141 VLLSYQPYFHSKWFP 155

[Close]

BLAST of MELO3C003749 vs. NCBI nr
Match: gi|700207560|gb|KGN62679.1| (hypothetical protein Csa_2G368800 [Cucumis sativus])

HSP 1 Score: 110.2 bits (274), Expect = 2.7e-21
Identity = 59/135 (43.70%), Postives = 81/135 (60.00%), Query Frame = 1


Query: 1   MSWVVEER-GPEWKYGWTERKMASMSLPPMPLLAFLGVVVLLLSLQS--------QQMVL 60
           M W++ ER GP WK GW E+ ++S++ PP PLLA LG++V+LLS+ S        ++  +
Sbjct: 1   MGWLIRERRGPAWKQGWAEQALSSITPPPRPLLAILGILVILLSVSSYSSYRSQVKKTRI 60

Query: 61  DFKLLLLALPFFIIFFANSVAVSGTVGSAAMRTKSRS---AQEAERTSPWGAAVLLFLLL 120
           +FKL  L LP   +F  NS+   G +     RTK       + A   SPWGAAVLL +LL
Sbjct: 61  NFKLFFLLLPLVFVFVGNSIVRYGRLVIITPRTKLEPVYVTEGAASASPWGAAVLLVVLL 120

Query: 121 ILLWNRPYFRSKWSP 124
           +LL  +PYF SKW P
Sbjct: 121 VLLSYQPYFHSKWFP 135

[Close]

BLAST of MELO3C003749 vs. NCBI nr
Match: gi|1009168959|ref|XP_015902940.1| (PREDICTED: uncharacterized protein LOC107435829 [Ziziphus jujuba])

HSP 1 Score: 105.1 bits (261), Expect = 8.8e-20
Identity = 57/132 (43.18%), Postives = 83/132 (62.88%), Query Frame = 1


Query: 1   MSWVVEERGPEWKYGWTERKMASMSLPPMPLLAFLGVVVLLLS--------LQSQQMVLD 60
           M W+  E   E K GWTER +AS+S PP+PLLA +G+VV+LLS        +Q Q+ ++ 
Sbjct: 1   MGWLFREIRGE-KQGWTERTLASISAPPLPLLAIVGIVVVLLSISSYTSFKMQMQRSIIG 60

Query: 61  FKLLLLALPFFIIFFANSVAVSGTVGSAAMRTKSRSAQEAERTSPWGAAVLLFLLLILLW 120
           FKL L  LP  +IF A+S+   G     + RTK  S+ ++   SPW  A+L+ +LL++++
Sbjct: 61  FKLFLFFLPLVLIFVAHSITRYGRFVVISPRTKEVSSSQS-GGSPWAVAMLVVVLLLMIF 120

Query: 121 NRPYFRSKWSPP 125
            +PYF SKW PP
Sbjct: 121 YQPYFHSKWWPP 130

The following BLAST results are available for this feature:

BLAST of MELO3C003749 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LE80_CUCSA	1.9e-61	96.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G872200 PE=4 SV=1	[more]
W9RNV3_9ROSA	4.6e-23	46.27	Uncharacterized protein OS=Morus notabilis GN=L484_016054 PE=4 SV=1	[more]
A0A0A0LNS9_CUCSA	1.9e-21	43.70	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G368800 PE=4 SV=1	[more]
B9GQV0_POPTR	9.8e-18	40.15	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s02370g PE=4 SV=1	[more]
A0A061FCF7_THECC	2.9e-17	39.69	Uncharacterized protein OS=Theobroma cacao GN=TCM_034228 PE=4 SV=1	[more]

BLAST of MELO3C003749 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700204905\|gb\|KGN60038.1\|	2.7e-61	96.00	hypothetical protein Csa_3G872200 [Cucumis sativus]	[more]
gi\|703129815\|ref\|XP_010104455.1\|	6.5e-23	46.27	hypothetical protein L484_016054 [Morus notabilis]	[more]
gi\|659088113\|ref\|XP_008444809.1\|	2.7e-21	43.70	PREDICTED: uncharacterized protein LOC103488045 [Cucumis melo]	[more]
gi\|700207560\|gb\|KGN62679.1\|	2.7e-21	43.70	hypothetical protein Csa_2G368800 [Cucumis sativus]	[more]
gi\|1009168959\|ref\|XP_015902940.1\|	8.8e-20	43.18	PREDICTED: uncharacterized protein LOC107435829 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C003749T1	MELO3C003749T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33306	FAMILY NOT NAMED	coord: 8..121 score: 2.5
None	No IPR available	PANTHER	PTHR33306:SF4	SUBFAMILY NOT NAMED	coord: 8..121 score: 2.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C003749	Csa3G872200	Cucumber (Chinese Long) v2	cumeB222
MELO3C003749	Cla020842	Watermelon (97103) v1	mewmB368
MELO3C003749	ClCG05G018250	Watermelon (Charleston Gray)	mewcgB331
MELO3C003749	CSPI03G43440	Wild cucumber (PI 183967)	cpimeB215
MELO3C003749	CmoCh01G020320	Cucurbita moschata (Rifu)	cmomeB414
MELO3C003749	Lsi04G017480	Bottle gourd (USVL1VR-Ls)	lsimeB311
MELO3C003749	Carg17200	Silver-seed gourd	carmeB0928
MELO3C003749	Carg03994	Silver-seed gourd	carmeB0956
MELO3C003749	CsaV3_2G029540	Cucumber (Chinese Long) v3	cucmeB131
MELO3C003749	CsaV3_3G045890	Cucumber (Chinese Long) v3	cucmeB219

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C003749	Watermelon (97103) v2	mewmbB332
MELO3C003749	Watermelon (97103) v2	mewmbB354
MELO3C003749	Wax gourd	mewgoB410
MELO3C003749	Wax gourd	mewgoB431
MELO3C003749	Melon (DHL92) v3.5.1	memeB118
MELO3C003749	Melon (DHL92) v3.5.1	memeB145
MELO3C003749	Cucumber (Gy14) v1	cgymeB280
MELO3C003749	Cucumber (Gy14) v1	cgymeB559
MELO3C003749	Cucurbita maxima (Rimu)	cmameB032
MELO3C003749	Cucurbita maxima (Rimu)	cmameB167
MELO3C003749	Cucurbita maxima (Rimu)	cmameB424
MELO3C003749	Cucurbita maxima (Rimu)	cmameB731
MELO3C003749	Cucurbita moschata (Rifu)	cmomeB021
MELO3C003749	Cucurbita moschata (Rifu)	cmomeB156
MELO3C003749	Cucurbita moschata (Rifu)	cmomeB721
MELO3C003749	Wild cucumber (PI 183967)	cpimeB129
MELO3C003749	Cucumber (Chinese Long) v2	cumeB127
MELO3C003749	Cucumber (Chinese Long) v2	cumeB485
MELO3C003749	Watermelon (Charleston Gray)	mewcgB352
MELO3C003749	Watermelon (97103) v1	mewmB351
MELO3C003749	Cucurbita pepo (Zucchini)	cpemeB095
MELO3C003749	Cucurbita pepo (Zucchini)	cpemeB516
MELO3C003749	Cucurbita pepo (Zucchini)	cpemeB726
MELO3C003749	Cucurbita pepo (Zucchini)	cpemeB766
MELO3C003749	Bottle gourd (USVL1VR-Ls)	lsimeB142
MELO3C003749	Bottle gourd (USVL1VR-Ls)	lsimeB480
MELO3C003749	Cucumber (Gy14) v2	cgybmeB111
MELO3C003749	Cucumber (Gy14) v2	cgybmeB185
MELO3C003749	Silver-seed gourd	carmeB0106
MELO3C003749	Silver-seed gourd	carmeB0144