MELO3C003414 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C003414
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Mediator of RNA polymerase II transcription subunit 7
Location	chr4 : 1018445 .. 1018758 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATAAGTGGTGGAACGAAGTAATGAGTGAAGAAGAAAAACACGATGATGAAATGGAGACGAAAAAGGTATGGTTTTTGTTTTAATTATTTCATTTTTTTGGTTGGTGGAATGGTTTGTAAATTGGGTATTTAAAATACAGAGAGACAATGAAGAAGAAGAAGAAGAAGAAGAAGAAAAAGAAAAAGATGATGAAGAAACAGTGGGAGTGGAAAGAGTTGGAGATTCAATGACACTAAAATTGAAGTGCTCATGTGGGAAGCGATTTGAGATTCTTCTATCTGGTAGAAACTGCTTCTACAAATTGTTGTAG

mRNA sequence

ATGAATAAGTGGTGGAACGAAGTAATGAGTGAAGAAGAAAAACACGATGATGAAATGGAGACGAAAAAGAGAGACAATGAAGAAGAAGAAGAAGAAGAAGAAGAAAAAGAAAAAGATGATGAAGAAACAGTGGGAGTGGAAAGAGTTGGAGATTCAATGACACTAAAATTGAAGTGCTCATGTGGGAAGCGATTTGAGATTCTTCTATCTGGTAGAAACTGCTTCTACAAATTGTTGTAG

Coding sequence (CDS)

ATGAATAAGTGGTGGAACGAAGTAATGAGTGAAGAAGAAAAACACGATGATGAAATGGAGACGAAAAAGAGAGACAATGAAGAAGAAGAAGAAGAAGAAGAAGAAAAAGAAAAAGATGATGAAGAAACAGTGGGAGTGGAAAGAGTTGGAGATTCAATGACACTAAAATTGAAGTGCTCATGTGGGAAGCGATTTGAGATTCTTCTATCTGGTAGAAACTGCTTCTACAAATTGTTGTAG

Protein sequence

MNKWWNEVMSEEEKHDDEMETKKRDNEEEEEEEEEKEKDDEETVGVERVGDSMTLKLKCSCGKRFEILLSGRNCFYKLL*

Homology

[Close]

BLAST of MELO3C003414 vs. TrEMBL
Match: A0A0A0LI25_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G902250 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 1.4e-30
Identity = 71/90 (78.89%), Postives = 75/90 (83.33%), Query Frame = 1


Query: 1   MNKWWNEVMSEEEKHDDEMETKK-----------RDNEEEEEEEEEKEKDDEETVGVERV 60
           MN WWNEVMSEEE+H+DE E KK           RD+EEEEEEEEE EKDDEETVGVERV
Sbjct: 177 MNHWWNEVMSEEEEHNDEKEIKKEWFVNGVFEIQRDDEEEEEEEEE-EKDDEETVGVERV 236

Query: 61  GDSMTLKLKCSCGKRFEILLSGRNCFYKLL 80
           GDSMTLKLKCSCGKRF+ILLSGRNCFYKLL
Sbjct: 237 GDSMTLKLKCSCGKRFDILLSGRNCFYKLL 265

[Close]

BLAST of MELO3C003414 vs. TrEMBL
Match: G7K699_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_5g069720 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.5e-06
Identity = 35/117 (29.91%), Postives = 57/117 (48.72%), Query Frame = 1


Query: 1   MNKWWNEVMSEEEKHDDEMETKKR-------DNEEEEEEEE--------EKEK------- 60
           M K W+EVM ++E+++ E E ++        + +E+E+E+E        E EK       
Sbjct: 161 MKKVWDEVMEDKEENESEQEQEEEPSPDVEDEKDEKEQEQEHSPDSLVAEDEKVISQLYL 220

Query: 61  ----------------DDEETVGVERVGDSMTLKLKCSCGKRFEILLSGRNCFYKLL 80
                           D EE V VE + + ++L  KC CGK +E+L+   NC+YKL+
Sbjct: 221 LDYVGSRSYGKDELGNDYEEAVSVEWIDECLSLTFKCPCGKGYEVLICANNCYYKLV 277

[Close]

BLAST of MELO3C003414 vs. TrEMBL
Match: R0HV44_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10024103mg PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.5e-06
Identity = 27/69 (39.13%), Postives = 42/69 (60.87%), Query Frame = 1


Query: 11  EEEKHDDEMETKKRDNEEEEEEEEEKEKDDEETVGVERVGDSMTLKLKCSCGKRFEILLS 70
           EE  H +     +++ EE EEEEEE+E+D    + +ER GD   ++LKCSC + F +L S
Sbjct: 128 EEMNHGETNYAYEKEQEEVEEEEEEEEEDCGGGMRIERSGDGFVIRLKCSCRQAFRVLFS 187

Query: 71  GRNCFYKLL 80
             + ++K L
Sbjct: 188 DHHLYFKAL 196

[Close]

BLAST of MELO3C003414 vs. NCBI nr
Match: gi|778687916|ref|XP_011652649.1| (PREDICTED: histone H3.v1-like [Cucumis sativus])

HSP 1 Score: 148.3 bits (373), Expect = 5.8e-33
Identity = 71/79 (89.87%), Postives = 75/79 (94.94%), Query Frame = 1


Query: 1   MNKWWNEVMSEEEKHDDEMETKKRDNEEEEEEEEEKEKDDEETVGVERVGDSMTLKLKCS 60
           MN WWNEVMSEEE+H+DE E KKRD+EEEEEEEEE EKDDEETVGVERVGDSMTLKLKCS
Sbjct: 177 MNHWWNEVMSEEEEHNDEKEIKKRDDEEEEEEEEE-EKDDEETVGVERVGDSMTLKLKCS 236

Query: 61  CGKRFEILLSGRNCFYKLL 80
           CGKRF+ILLSGRNCFYKLL
Sbjct: 237 CGKRFDILLSGRNCFYKLL 254

[Close]

BLAST of MELO3C003414 vs. NCBI nr
Match: gi|700205249|gb|KGN60382.1| (hypothetical protein Csa_3G902250 [Cucumis sativus])

HSP 1 Score: 139.8 bits (351), Expect = 2.1e-30
Identity = 71/90 (78.89%), Postives = 75/90 (83.33%), Query Frame = 1


Query: 1   MNKWWNEVMSEEEKHDDEMETKK-----------RDNEEEEEEEEEKEKDDEETVGVERV 60
           MN WWNEVMSEEE+H+DE E KK           RD+EEEEEEEEE EKDDEETVGVERV
Sbjct: 177 MNHWWNEVMSEEEEHNDEKEIKKEWFVNGVFEIQRDDEEEEEEEEE-EKDDEETVGVERV 236

Query: 61  GDSMTLKLKCSCGKRFEILLSGRNCFYKLL 80
           GDSMTLKLKCSCGKRF+ILLSGRNCFYKLL
Sbjct: 237 GDSMTLKLKCSCGKRFDILLSGRNCFYKLL 265

[Close]

BLAST of MELO3C003414 vs. NCBI nr
Match: gi|629105636|gb|KCW71105.1| (hypothetical protein EUGRSUZ_F04204 [Eucalyptus grandis])

HSP 1 Score: 76.3 bits (186), Expect = 2.8e-11
Identity = 37/81 (45.68%), Postives = 53/81 (65.43%), Query Frame = 1


Query: 1   MNKWWNEVMSEEEKHD--DEMETKKRDNEEEEEEEEEKEKDDEETVGVERVGDSMTLKLK 60
           M KWWN VM E E+ D  DE +   R  E  ++ E +  ++++ETV VE +GD + + L 
Sbjct: 74  MGKWWNHVMCEAEEDDRPDERDNT-RSLEIAQQVEHKGVQENQETVSVEVIGDCLGINLA 133

Query: 61  CSCGKRFEILLSGRNCFYKLL 80
           C+CGK F+ILLSG  C+YKL+
Sbjct: 134 CTCGKGFQILLSGNKCYYKLV 153

[Close]

BLAST of MELO3C003414 vs. NCBI nr
Match: gi|502090020|ref|XP_004489095.1| (PREDICTED: myotubularin-related protein DDB_G0290005 [Cicer arietinum])

HSP 1 Score: 65.5 bits (158), Expect = 4.9e-08
Identity = 33/94 (35.11%), Postives = 53/94 (56.38%), Query Frame = 1


Query: 1   MNKWWNEVMSEEEKHDDEMETKKRDNEEEEEE---------------EEEKEKDDEETVG 60
           M +WW+EVM +EE+ ++    K+++ EEEEE                ++E  +D EE V 
Sbjct: 167 MRQWWDEVMKDEEQEEE----KEKEIEEEEEHSPVDDNDYDDDKVLSQDELVEDIEEAVK 226

Query: 61  VERVGDSMTLKLKCSCGKRFEILLSGRNCFYKLL 80
           VE     ++L  +C CGK +E+L+S   C+YKL+
Sbjct: 227 VEWAEKCLSLTFRCPCGKGYEVLISANKCYYKLV 256

[Close]

BLAST of MELO3C003414 vs. NCBI nr
Match: gi|965668816|dbj|BAT83423.1| (hypothetical protein VIGAN_04056600 [Vigna angularis var. angularis])

HSP 1 Score: 64.7 bits (156), Expect = 8.4e-08
Identity = 30/81 (37.04%), Postives = 50/81 (61.73%), Query Frame = 1


Query: 1  MNKWWNEVMSEEEKHD--DEMETKKRDNEEEEEEEEEKEKDDEETVGVERVGDSMTLKLK 60
          M +WW+EVM ++E+ +  +E E    ++E+   +++    D EE V VE     ++L  +
Sbjct: 8  MRQWWDEVMKDDEEENVREEEECIAAEDEKVLPQDDLGAGDSEEAVSVEWAEKCVSLGFR 67

Query: 61 CSCGKRFEILLSGRNCFYKLL 80
          C CGK +E+LLS  NC+YKL+
Sbjct: 68 CPCGKGYEVLLSENNCYYKLV 88

The following BLAST results are available for this feature:

BLAST of MELO3C003414 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LI25_CUCSA	1.4e-30	78.89	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G902250 PE=4 SV=1	[more]
G7K699_MEDTR	2.5e-06	29.91	Uncharacterized protein OS=Medicago truncatula GN=MTR_5g069720 PE=4 SV=1	[more]
R0HV44_9BRAS	2.5e-06	39.13	Uncharacterized protein OS=Capsella rubella GN=CARUB_v10024103mg PE=4 SV=1	[more]

BLAST of MELO3C003414 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778687916\|ref\|XP_011652649.1\|	5.8e-33	89.87	PREDICTED: histone H3.v1-like [Cucumis sativus]	[more]
gi\|700205249\|gb\|KGN60382.1\|	2.1e-30	78.89	hypothetical protein Csa_3G902250 [Cucumis sativus]	[more]
gi\|629105636\|gb\|KCW71105.1\|	2.8e-11	45.68	hypothetical protein EUGRSUZ_F04204 [Eucalyptus grandis]	[more]
gi\|502090020\|ref\|XP_004489095.1\|	4.9e-08	35.11	PREDICTED: myotubularin-related protein DDB_G0290005 [Cicer arietinum]	[more]
gi\|965668816\|dbj\|BAT83423.1\|	8.4e-08	37.04	hypothetical protein VIGAN_04056600 [Vigna angularis var. angularis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C003414T1	MELO3C003414T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 12..44 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C003414	Csa3G902250	Cucumber (Chinese Long) v2	cumeB222
MELO3C003414	Cla016202	Watermelon (97103) v1	mewmB342
MELO3C003414	ClCG09G011900	Watermelon (Charleston Gray)	mewcgB310
MELO3C003414	Cla97C09G174710	Watermelon (97103) v2	mewmbB363
MELO3C003414	Bhi05G000332	Wax gourd	mewgoB405
MELO3C003414	CSPI03G46670	Wild cucumber (PI 183967)	cpimeB215
MELO3C003414	Cucsa.313070	Cucumber (Gy14) v1	cgymeB517
MELO3C003414	CmaCh02G016150	Cucurbita maxima (Rimu)	cmameB567
MELO3C003414	Cp4.1LG05g00090	Cucurbita pepo (Zucchini)	cpemeB689
MELO3C003414	CsGy3G044110	Cucumber (Gy14) v2	cgybmeB185
MELO3C003414	Carg08841	Silver-seed gourd	carmeB0771
MELO3C003414	CsaV3_3G049130	Cucumber (Chinese Long) v3	cucmeB219

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C003414	Cucurbita pepo (Zucchini)	cpemeB799
MELO3C003414	Bottle gourd (USVL1VR-Ls)	lsimeB002
MELO3C003414	Bottle gourd (USVL1VR-Ls)	lsimeB439
MELO3C003414	Cucumber (Gy14) v2	cgybmeB188
MELO3C003414	Silver-seed gourd	carmeB0502
MELO3C003414	Silver-seed gourd	carmeB0942
MELO3C003414	Silver-seed gourd	carmeB0949
MELO3C003414	Cucumber (Chinese Long) v3	cucmeB222
MELO3C003414	Watermelon (97103) v2	mewmbB318
MELO3C003414	Melon (DHL92) v3.5.1	memeB139
MELO3C003414	Cucumber (Gy14) v1	cgymeB531
MELO3C003414	Cucurbita maxima (Rimu)	cmameB288
MELO3C003414	Cucurbita maxima (Rimu)	cmameB472
MELO3C003414	Cucurbita maxima (Rimu)	cmameB757
MELO3C003414	Cucurbita moschata (Rifu)	cmomeB281
MELO3C003414	Cucurbita moschata (Rifu)	cmomeB462
MELO3C003414	Cucurbita moschata (Rifu)	cmomeB556
MELO3C003414	Cucurbita moschata (Rifu)	cmomeB749
MELO3C003414	Wild cucumber (PI 183967)	cpimeB218
MELO3C003414	Cucumber (Chinese Long) v2	cumeB227
MELO3C003414	Watermelon (Charleston Gray)	mewcgB317
MELO3C003414	Watermelon (97103) v1	mewmB347
MELO3C003414	Cucurbita pepo (Zucchini)	cpemeB183
MELO3C003414	Cucurbita pepo (Zucchini)	cpemeB232