MELO3C003320.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C003320.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	synaptic vesicle membrane protein VAT-1 homolog
Location	chr04 : 286578 .. 287677 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAATTTTGGACAAATAAAAATTTGACTTTTGTTCATATTATTTTATTTAAAAAGAGAATTAGGAGGAGGAATGGGCATTTTCAACAGAGATGACATGCGAATGCGTCATTATTGAAAACAAATGTAATAATCCCTTCCCTTCCTCTCTCTCCTTTTTGGATTTTTAGCCCTTCGAAATCCCGCTGTTAGACAGCGACTTTCCCCTCTCCCCTTTCCATAAAGCCCTTTTTTCCCCCTTCATCTCTTCTCATTTTTCATATTCCAGTTTTCATCTCTCTTTTCCCCTTTCGCTAAAATGGCTCAGGTTTGTTCTTCTTCCTTCTCTCTCTCCCTAATCTCTCTGTAAACTCATAATCAGATTTTACATGTTCTCTGTCAATCACTGACTCCAATGGATTTGATTTTGCGTTCGCAGAAAGTTGTGCTGAAGGTGATGACGATGACGGACGAGAAGACGAAGCAGAAAGCAATCGAAGCTGCGGCAGACATCTACGGTTAGTTGGAGATTTAATTTAATTTTGTGATAGATGTGTAATTAATTGTGAAAAATGGGTGCTTTTTGTTTTGGATTATTATATTATAGGATAAAGGAAAAGTGGGTTAGAAATTGTGTTTGGATAATGATGATATTAGGTGTTGATTCGATCGCGGCGGATCTGAAGGATCAGAAATTGACGGTGGTAGGATCGATGGACGCGGTTGCGATAGTGAAGAAATTGAAGAAAGTAGGTAAAGTGGATATAATATCAGTCGGACCTGCAAAGGAAGAGAAGAAAGAAGAGAAGAAAGAGGAGAAAAAGGATGAGAAAAAGGATGAGAAAAAAGAGGAGCCCAAGAAAGAGGAGGCTAAGAAAGATGAAAAAAAGTAAAACTATTGATGTTAAAAAACTTACAATTCCTTCTTCTTTCAATTTTGAGAATATTCTAATTTAAATACTCATCATTTTCATAATATCAAAACACATATATAAAGGAAAGAAGCTACCTTTCTACTTTATATTTCTCAATTGCATTGTACAAATAAACCATTAATTACATTTTTCTATATCTTCTTCTTCTTCTTCTTCTTCTTATTATTATTTCTTATCAAGCATATGAT

mRNA sequence

AGAATTTTGGACAAATAAAAATTTGACTTTTGTTCATATTATTTTATTTAAAAAGAGAATTAGGAGGAGGAATGGGCATTTTCAACAGAGATGACATGCGAATGCGTCATTATTGAAAACAAATGTAATAATCCCTTCCCTTCCTCTCTCTCCTTTTTGGATTTTTAGCCCTTCGAAATCCCGCTGTTAGACAGCGACTTTCCCCTCTCCCCTTTCCATAAAGCCCTTTTTTCCCCCTTCATCTCTTCTCATTTTTCATATTCCAGTTTTCATCTCTCTTTTCCCCTTTCGCTAAAATGGCTCAGAAAGTTGTGCTGAAGGTGATGACGATGACGGACGAGAAGACGAAGCAGAAAGCAATCGAAGCTGCGGCAGACATCTACGGATAAAGGAAAAGTGGGTTAGAAATTGTGTTTGGATAATGATGATATTAGGTGTTGATTCGATCGCGGCGGATCTGAAGGATCAGAAATTGACGGTGGTAGGATCGATGGACGCGGTTGCGATAGTGAAGAAATTGAAGAAAGTAGGTAAAGTGGATATAATATCAGTCGGACCTGCAAAGGAAGAGAAGAAAGAAGAGAAGAAAGAGGAGAAAAAGGATGAGAAAAAGGATGAGAAAAAAGAGGAGCCCAAGAAAGAGGAGGCTAAGAAAGATGAAAAAAAGTAAAACTATTGATGTTAAAAAACTTACAATTCCTTCTTCTTTCAATTTTGAGAATATTCTAATTTAAATACTCATCATTTTCATAATATCAAAACACATATATAAAGGAAAGAAGCTACCTTTCTACTTTATATTTCTCAATTGCATTGTACAAATAAACCATTAATTACATTTTTCTATATCTTCTTCTTCTTCTTCTTCTTCTTATTATTATTTCTTATCAAGCATATGAT

Coding sequence (CDS)

ATGATGATATTAGGTGTTGATTCGATCGCGGCGGATCTGAAGGATCAGAAATTGACGGTGGTAGGATCGATGGACGCGGTTGCGATAGTGAAGAAATTGAAGAAAGTAGGTAAAGTGGATATAATATCAGTCGGACCTGCAAAGGAAGAGAAGAAAGAAGAGAAGAAAGAGGAGAAAAAGGATGAGAAAAAGGATGAGAAAAAAGAGGAGCCCAAGAAAGAGGAGGCTAAGAAAGATGAAAAAAAGTAA

Protein sequence

MMILGVDSIAADLKDQKLTVVGSMDAVAIVKKLKKVGKVDIISVGPAKEEKKEEKKEEKKDEKKDEKKEEPKKEEAKKDEKK

Homology

[Close]

BLAST of MELO3C003320.2 vs. NCBI nr
Match: KGN60473.1 (hypothetical protein Csa_3G914040 [Cucumis sativus])

HSP 1 Score: 91.3 bits (225), Expect = 1.7e-15
Identity = 49/50 (98.00%), Postives = 50/50 (100.00%), Query Frame = 0


Query: 1  MMILGVDSIAADLKDQKLTVVGSMDAVAIVKKLKKVGKVDIISVGPAKEE 51
          MMILGVDSIAADLKDQKLTV+GSMDAVAIVKKLKKVGKVDIISVGPAKEE
Sbjct: 1  MMILGVDSIAADLKDQKLTVIGSMDAVAIVKKLKKVGKVDIISVGPAKEE 50

[Close]

BLAST of MELO3C003320.2 vs. NCBI nr
Match: XP_008465871.1 (PREDICTED: synaptic vesicle membrane protein VAT-1 homolog [Cucumis melo])

HSP 1 Score: 86.3 bits (212), Expect = 5.4e-14
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = 0


Query: 3  ILGVDSIAADLKDQKLTVVGSMDAVAIVKKLKKVGKVDIISVGPAKEE 51
          I GVDSIAADLKDQKLTVVGSMDAVAIVKKLKKVGKVDIISVGPAKEE
Sbjct: 28 IYGVDSIAADLKDQKLTVVGSMDAVAIVKKLKKVGKVDIISVGPAKEE 75

[Close]

BLAST of MELO3C003320.2 vs. NCBI nr
Match: XP_022957620.1 (heavy metal-associated isoprenylated plant protein 39-like [Cucurbita moschata])

HSP 1 Score: 86.3 bits (212), Expect = 5.4e-14
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = 0


Query: 3  ILGVDSIAADLKDQKLTVVGSMDAVAIVKKLKKVGKVDIISVGPAKEE 51
          I GVDSIAADLKDQKLTVVGSMDAVAIVKKLKKVGKVDIISVGPAKEE
Sbjct: 28 IYGVDSIAADLKDQKLTVVGSMDAVAIVKKLKKVGKVDIISVGPAKEE 75

[Close]

BLAST of MELO3C003320.2 vs. NCBI nr
Match: XP_023532946.1 (heavy metal-associated isoprenylated plant protein 39-like [Cucurbita pepo subsp. pepo] >XP_023532947.1 heavy metal-associated isoprenylated plant protein 39-like [Cucurbita pepo subsp. pepo] >XP_023532948.1 heavy metal-associated isoprenylated plant protein 39-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 86.3 bits (212), Expect = 5.4e-14
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = 0


Query: 3   ILGVDSIAADLKDQKLTVVGSMDAVAIVKKLKKVGKVDIISVGPAKEE 51
           I GVDSIAADLKDQKLTVVGSMDAVAIVKKLKKVGKVDIISVGPAKEE
Sbjct: 62  IYGVDSIAADLKDQKLTVVGSMDAVAIVKKLKKVGKVDIISVGPAKEE 109

[Close]

BLAST of MELO3C003320.2 vs. NCBI nr
Match: XP_004148353.1 (PREDICTED: FK506-binding nuclear protein [Cucumis sativus])

HSP 1 Score: 85.9 bits (211), Expect = 7.0e-14
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 0


Query: 3  ILGVDSIAADLKDQKLTVVGSMDAVAIVKKLKKVGKVDIISVGPAKEE 51
          I GVDSIAADLKDQKLTV+GSMDAVAIVKKLKKVGKVDIISVGPAKEE
Sbjct: 28 IYGVDSIAADLKDQKLTVIGSMDAVAIVKKLKKVGKVDIISVGPAKEE 75

[Close]

BLAST of MELO3C003320.2 vs. TAIR10
Match: AT5G23760.1 (Copper transport protein family)

HSP 1 Score: 82.0 bits (201), Expect = 1.8e-16
Identity = 42/48 (87.50%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 3  ILGVDSIAADLKDQKLTVVGSMDAVAIVKKLKKVGKVDIISVGPAKEE 51
          I GVDSIAAD+KDQKLTV+G MDAVA+VKKLKKVGKVD+ISVGPAKEE
Sbjct: 28 IFGVDSIAADMKDQKLTVIGLMDAVAVVKKLKKVGKVDLISVGPAKEE 75

[Close]

BLAST of MELO3C003320.2 vs. TAIR10
Match: AT1G01490.1 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 50.8 bits (120), Expect = 4.5e-07
Identity = 26/46 (56.52%), Postives = 37/46 (80.43%), Query Frame = 0


Query: 5  GVDSIAADLKDQKLTVVGSMDAVAIVKKLKKVGKV-DIISVGPAKE 50
          G+DSIA D+K++KLTV+G++D V +V KL+K   + DI+ VGPAKE
Sbjct: 28 GIDSIAMDMKEKKLTVIGTVDPVNVVSKLRKYWPMTDIVLVGPAKE 73

[Close]

BLAST of MELO3C003320.2 vs. TAIR10
Match: AT5G52740.1 (Copper transport protein family)

HSP 1 Score: 47.4 bits (111), Expect = 5.0e-06
Identity = 26/45 (57.78%), Postives = 33/45 (73.33%), Query Frame = 0


Query: 5  GVDSIAADLKDQKLTVVGSMDAVAIVKKLKKVGKVDIISVGPAKE 50
          GV+S+  ++KD KLTV G +DA  IVKKLKK+   + ISVGP KE
Sbjct: 28 GVNSV--EVKDGKLTVTGEIDAYMIVKKLKKICHTEFISVGPVKE 70

[Close]

BLAST of MELO3C003320.2 vs. Swiss-Prot
Match: sp|O03982|HIP39_ARATH (Heavy metal-associated isoprenylated plant protein 39 OS=Arabidopsis thaliana OX=3702 GN=HIPP39 PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 8.2e-06
Identity = 26/46 (56.52%), Postives = 37/46 (80.43%), Query Frame = 0


Query: 5  GVDSIAADLKDQKLTVVGSMDAVAIVKKLKKVGKV-DIISVGPAKE 50
          G+DSIA D+K++KLTV+G++D V +V KL+K   + DI+ VGPAKE
Sbjct: 28 GIDSIAMDMKEKKLTVIGTVDPVNVVSKLRKYWPMTDIVLVGPAKE 73

[Close]

BLAST of MELO3C003320.2 vs. Swiss-Prot
Match: sp|Q9LTE3|HIP12_ARATH (Heavy metal-associated isoprenylated plant protein 12 OS=Arabidopsis thaliana OX=3702 GN=HIPP12 PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 9.1e-05
Identity = 26/45 (57.78%), Postives = 33/45 (73.33%), Query Frame = 0


Query: 5  GVDSIAADLKDQKLTVVGSMDAVAIVKKLKKVGKVDIISVGPAKE 50
          GV+S+  ++KD KLTV G +DA  IVKKLKK+   + ISVGP KE
Sbjct: 28 GVNSV--EVKDGKLTVTGEIDAYMIVKKLKKICHTEFISVGPVKE 70

[Close]

BLAST of MELO3C003320.2 vs. TrEMBL
Match: tr|A0A0A0LFC9|A0A0A0LFC9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G914040 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.1e-15
Identity = 49/50 (98.00%), Postives = 50/50 (100.00%), Query Frame = 0


Query: 1  MMILGVDSIAADLKDQKLTVVGSMDAVAIVKKLKKVGKVDIISVGPAKEE 51
          MMILGVDSIAADLKDQKLTV+GSMDAVAIVKKLKKVGKVDIISVGPAKEE
Sbjct: 1  MMILGVDSIAADLKDQKLTVIGSMDAVAIVKKLKKVGKVDIISVGPAKEE 50

[Close]

BLAST of MELO3C003320.2 vs. TrEMBL
Match: tr|A0A1S3CPW6|A0A1S3CPW6_CUCME (synaptic vesicle membrane protein VAT-1 homolog OS=Cucumis melo OX=3656 GN=LOC103503459 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.6e-14
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = 0


Query: 3  ILGVDSIAADLKDQKLTVVGSMDAVAIVKKLKKVGKVDIISVGPAKEE 51
          I GVDSIAADLKDQKLTVVGSMDAVAIVKKLKKVGKVDIISVGPAKEE
Sbjct: 28 IYGVDSIAADLKDQKLTVVGSMDAVAIVKKLKKVGKVDIISVGPAKEE 75

[Close]

BLAST of MELO3C003320.2 vs. TrEMBL
Match: tr|A0A2G9HXR8|A0A2G9HXR8_9LAMI (Copper chaperone OS=Handroanthus impetiginosus OX=429701 GN=CDL12_05029 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 7.9e-14
Identity = 44/48 (91.67%), Postives = 47/48 (97.92%), Query Frame = 0


Query: 3  ILGVDSIAADLKDQKLTVVGSMDAVAIVKKLKKVGKVDIISVGPAKEE 51
          ILGVDSIAADLKDQKLTVVG MDAVA+VKKLKKVGK+DI+SVGPAKEE
Sbjct: 29 ILGVDSIAADLKDQKLTVVGEMDAVAVVKKLKKVGKIDILSVGPAKEE 76

[Close]

BLAST of MELO3C003320.2 vs. TrEMBL
Match: tr|A0A061G0W6|A0A061G0W6_THECC (Copper transport protein family OS=Theobroma cacao OX=3641 GN=TCM_015168 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.4e-13
Identity = 45/48 (93.75%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 3   ILGVDSIAADLKDQKLTVVGSMDAVAIVKKLKKVGKVDIISVGPAKEE 51
           I GVDSIAADLKDQKLTVVG MDAVA+VKKLKKVGKVDIISVGPAKEE
Sbjct: 82  IYGVDSIAADLKDQKLTVVGQMDAVAVVKKLKKVGKVDIISVGPAKEE 129

[Close]

BLAST of MELO3C003320.2 vs. TrEMBL
Match: tr|A0A2N9GN73|A0A2N9GN73_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS28897 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.8e-13
Identity = 43/48 (89.58%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 3  ILGVDSIAADLKDQKLTVVGSMDAVAIVKKLKKVGKVDIISVGPAKEE 51
          I G+DSIAADLKDQKLTV+G MDAVAIVKKLKKVGKVDI+SVGPAKEE
Sbjct: 28 IFGIDSIAADLKDQKLTVIGQMDAVAIVKKLKKVGKVDIVSVGPAKEE 75

The following BLAST results are available for this feature:

BLAST of MELO3C003320.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60473.1	1.7e-15	98.00	hypothetical protein Csa_3G914040 [Cucumis sativus]	[more]
XP_008465871.1	5.4e-14	97.92	PREDICTED: synaptic vesicle membrane protein VAT-1 homolog [Cucumis melo]	[more]
XP_022957620.1	5.4e-14	97.92	heavy metal-associated isoprenylated plant protein 39-like [Cucurbita moschata]	[more]
XP_023532946.1	5.4e-14	97.92	heavy metal-associated isoprenylated plant protein 39-like [Cucurbita pepo subsp...	[more]
XP_004148353.1	7.0e-14	95.83	PREDICTED: FK506-binding nuclear protein [Cucumis sativus]	[more]

BLAST of MELO3C003320.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G23760.1	1.8e-16	87.50	Copper transport protein family	[more]
AT1G01490.1	4.5e-07	56.52	Heavy metal transport/detoxification superfamily protein	[more]
AT5G52740.1	5.0e-06	57.78	Copper transport protein family	[more]

BLAST of MELO3C003320.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O03982\|HIP39_ARATH	8.2e-06	56.52	Heavy metal-associated isoprenylated plant protein 39 OS=Arabidopsis thaliana OX...	[more]
sp\|Q9LTE3\|HIP12_ARATH	9.1e-05	57.78	Heavy metal-associated isoprenylated plant protein 12 OS=Arabidopsis thaliana OX...	[more]

BLAST of MELO3C003320.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LFC9\|A0A0A0LFC9_CUCSA	1.1e-15	98.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G914040 PE=4 SV=1	[more]
tr\|A0A1S3CPW6\|A0A1S3CPW6_CUCME	3.6e-14	97.92	synaptic vesicle membrane protein VAT-1 homolog OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A2G9HXR8\|A0A2G9HXR8_9LAMI	7.9e-14	91.67	Copper chaperone OS=Handroanthus impetiginosus OX=429701 GN=CDL12_05029 PE=4 SV=...	[more]
tr\|A0A061G0W6\|A0A061G0W6_THECC	1.4e-13	93.75	Copper transport protein family OS=Theobroma cacao OX=3641 GN=TCM_015168 PE=4 SV...	[more]
tr\|A0A2N9GN73\|A0A2N9GN73_FAGSY	1.8e-13	89.58	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS28897 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030001	metal ion transport
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C003320.2.1	MELO3C003320.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 48..70
None	No IPR available	GENE3D	G3DSA:3.30.70.100		coord: 2..40 e-value: 4.4E-5 score: 25.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..82
None	No IPR available	PANTHER	PTHR22814:SF52	SUBFAMILY NOT NAMED	coord: 4..76
None	No IPR available	PANTHER	PTHR22814	COPPER TRANSPORT PROTEIN ATOX1-RELATED	coord: 4..76

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C003320.2	CmaCh02G010660	Cucurbita maxima (Rimu)	cmamedB651
MELO3C003320.2	Cla97C09G175630	Watermelon (97103) v2	medwmbB351
MELO3C003320.2	Bhi05G000439	Wax gourd	medwgoB404
MELO3C003320.2	Carg25090	Silver-seed gourd	carmedB0226
MELO3C003320.2	CsaV3_3G049960	Cucumber (Chinese Long) v3	cucmedB212

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C003320.2	Cucumber (Gy14) v2	cgybmedB186
MELO3C003320.2	Cucumber (Gy14) v1	cgymedB517
MELO3C003320.2	Cucurbita maxima (Rimu)	cmamedB544
MELO3C003320.2	Cucurbita maxima (Rimu)	cmamedB547
MELO3C003320.2	Cucurbita maxima (Rimu)	cmamedB647
MELO3C003320.2	Cucurbita moschata (Rifu)	cmomedB530
MELO3C003320.2	Cucurbita moschata (Rifu)	cmomedB534
MELO3C003320.2	Cucurbita moschata (Rifu)	cmomedB635
MELO3C003320.2	Cucurbita moschata (Rifu)	cmomedB639
MELO3C003320.2	Cucurbita pepo (Zucchini)	cpemedB269
MELO3C003320.2	Cucurbita pepo (Zucchini)	cpemedB272
MELO3C003320.2	Cucurbita pepo (Zucchini)	cpemedB821
MELO3C003320.2	Cucurbita pepo (Zucchini)	cpemedB824
MELO3C003320.2	Wild cucumber (PI 183967)	cpimedB209
MELO3C003320.2	Cucumber (Chinese Long) v2	cumedB208
MELO3C003320.2	Bottle gourd (USVL1VR-Ls)	lsimedB366
MELO3C003320.2	Bottle gourd (USVL1VR-Ls)	lsimedB374
MELO3C003320.2	Watermelon (Charleston Gray)	medwcgB303
MELO3C003320.2	Watermelon (Charleston Gray)	medwcgB305
MELO3C003320.2	Watermelon (97103) v1	medwmB337
MELO3C003320.2	Watermelon (97103) v1	medwmB340
MELO3C003320.2	Silver-seed gourd	carmedB0227
MELO3C003320.2	Silver-seed gourd	carmedB0784
MELO3C003320.2	Watermelon (97103) v2	medwmbB354
MELO3C003320.2	Wax gourd	medwgoB409