MELO3C003031 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C003031
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	dTDP-glucose 4,6-dehydratase
Location	chr9 : 10447155 .. 10447471 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAAACAAATTCAATCAACCTCCAACAATGAAGAGCTTAGTAAAATGAAGCCATCCAATATACAATCTACGCAAGATTTGATGGACTTTGTGAACGAAAAGAAGAGTAAACGGTTCAAGGTAAGTCAATGTGGCCATTTGTTTAAAAAGACACACATAAGTACAATTTATGTTTGATGATTATCCCATTTGTGTTTGATTAGGCTGAAAGTGCAAAGTTCAAATCTATGAAGAAGAGGAAACTTCCACATACATGTAGCCGTAAAGGTTATGCTCGACTGGCGGAAGATATGGTATTCATTATTCTAAAGTAA

mRNA sequence

ATGGTGAAACAAATTCAATCAACCTCCAACAATGAAGAGCTTAGTAAAATGAAGCCATCCAATATACAATCTACGCAAGATTTGATGGACTTTGTGAACGAAAAGAAGAGTAAACGGTTCAAGGCTGAAAGTGCAAAGTTCAAATCTATGAAGAAGAGGAAACTTCCACATACATGTAGCCGTAAAGGTTATGCTCGACTGGCGGAAGATATGGTATTCATTATTCTAAAGTAA

Coding sequence (CDS)

ATGGTGAAACAAATTCAATCAACCTCCAACAATGAAGAGCTTAGTAAAATGAAGCCATCCAATATACAATCTACGCAAGATTTGATGGACTTTGTGAACGAAAAGAAGAGTAAACGGTTCAAGGCTGAAAGTGCAAAGTTCAAATCTATGAAGAAGAGGAAACTTCCACATACATGTAGCCGTAAAGGTTATGCTCGACTGGCGGAAGATATGGTATTCATTATTCTAAAGTAA

Protein sequence

MVKQIQSTSNNEELSKMKPSNIQSTQDLMDFVNEKKSKRFKAESAKFKSMKKRKLPHTCSRKGYARLAEDMVFIILK*

Homology

[Close]

BLAST of MELO3C003031 vs. TrEMBL
Match: A0A0A0L5I2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G113900 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 4.1e-22
Identity = 55/71 (77.46%), Postives = 60/71 (84.51%), Query Frame = 1


Query: 1   MVKQIQSTSNNEELSKMKPSNIQSTQDLMDFVNEKKSKRFKAESAKFKSMKKRKLPHTCS 60
           +V QIQSTS NEEL KMKPSN+QS  D MDFV EKKS  FKA+S KFKSMKK +LPHTCS
Sbjct: 582 IVSQIQSTSTNEELVKMKPSNVQSMHDWMDFVKEKKSATFKAKSEKFKSMKKMQLPHTCS 641

Query: 61  RKGYARLAEDM 72
           RKGYARLAE+M
Sbjct: 642 RKGYARLAEEM 652

[Close]

BLAST of MELO3C003031 vs. TrEMBL
Match: A0A0A0L5I2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G113900 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.6e-05
Identity = 30/53 (56.60%), Postives = 35/53 (66.04%), Query Frame = 1


Query: 1   MVKQIQSTSNNEELSKMKPSNIQSTQDLMDFVNEKKSKRFKAESAKFKSMKKR 54
           +V QIQSTS +EEL KMKPSNI+S  D M+FV EKKS  FK +     S   R
Sbjct: 920 IVSQIQSTSTSEELVKMKPSNIKSMHDWMNFVKEKKSAMFKKKGCPDSSSVSR 972

HSP 2 Score: 37.0 bits (84), Expect = 1.3e+01
Identity = 19/31 (61.29%), Postives = 24/31 (77.42%), Query Frame = 1


Query: 41  KAESAKFKSMKKRKLPHTCSRKGYARLAEDM 72
           +A+S KFKSMK+ +LP T  RK Y RLAE+M
Sbjct: 313 QAKSEKFKSMKEMQLPST-RRKSYTRLAEEM 342

HSP 3 Score: 79.3 bits (194), Expect = 2.2e-12
Identity = 36/71 (50.70%), Postives = 50/71 (70.42%), Query Frame = 1


Query: 1   MVKQIQSTSNNEELSKMKPSNIQSTQDLMDFVNEKKSKRFKAESAKFKSMKKRKLPHTCS 60
           +V +I+   N EE  K++P NI+S  D   FV EK S  FKA+S +F+ M+K+ +PHTCS
Sbjct: 454 LVNKIREVPNEEERLKLRPKNIKSEADWKAFVREKTSAEFKAKSDRFREMRKKLVPHTCS 513

Query: 61  RKGYARLAEDM 72
           RKGYARL ++M
Sbjct: 514 RKGYARLVDEM 524

[Close]

BLAST of MELO3C003031 vs. TrEMBL
Match: Q9C6V0_ARATH (En/Spm-like transposon protein, putative OS=Arabidopsis thaliana GN=F27M3_21 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 5.3e-06
Identity = 31/70 (44.29%), Postives = 41/70 (58.57%), Query Frame = 1


Query: 2    VKQIQSTSNNEELSKMKPSNIQSTQDLMDFVNEKKSKRFKAESAKFKSMKKRKLPHTCSR 61
            VK I    NN++   ++P NI S  +   FV  K S  FK  S K+K  ++ ++PHT SR
Sbjct: 1008 VKDINLAPNNQQKMNLRPMNI-SPIEWRKFVKIKTSAAFKVVSDKYKERRRNQIPHTTSR 1067

Query: 62   KGYARLAEDM 72
            KG  RLAEDM
Sbjct: 1068 KGMVRLAEDM 1076

[Close]

BLAST of MELO3C003031 vs. NCBI nr
Match: gi|700201166|gb|KGN56299.1| (hypothetical protein Csa_3G113900 [Cucumis sativus])

HSP 1 Score: 111.7 bits (278), Expect = 5.8e-22
Identity = 55/71 (77.46%), Postives = 60/71 (84.51%), Query Frame = 1


Query: 1   MVKQIQSTSNNEELSKMKPSNIQSTQDLMDFVNEKKSKRFKAESAKFKSMKKRKLPHTCS 60
           +V QIQSTS NEEL KMKPSN+QS  D MDFV EKKS  FKA+S KFKSMKK +LPHTCS
Sbjct: 582 IVSQIQSTSTNEELVKMKPSNVQSMHDWMDFVKEKKSATFKAKSEKFKSMKKMQLPHTCS 641

Query: 61  RKGYARLAEDM 72
           RKGYARLAE+M
Sbjct: 642 RKGYARLAEEM 652

[Close]

BLAST of MELO3C003031 vs. NCBI nr
Match: gi|700201166|gb|KGN56299.1| (hypothetical protein Csa_3G113900 [Cucumis sativus])

HSP 1 Score: 56.6 bits (135), Expect = 2.2e-05
Identity = 30/53 (56.60%), Postives = 35/53 (66.04%), Query Frame = 1


Query: 1   MVKQIQSTSNNEELSKMKPSNIQSTQDLMDFVNEKKSKRFKAESAKFKSMKKR 54
           +V QIQSTS +EEL KMKPSNI+S  D M+FV EKKS  FK +     S   R
Sbjct: 920 IVSQIQSTSTSEELVKMKPSNIKSMHDWMNFVKEKKSAMFKKKGCPDSSSVSR 972

HSP 2 Score: 37.0 bits (84), Expect = 1.8e+01
Identity = 19/31 (61.29%), Postives = 24/31 (77.42%), Query Frame = 1


Query: 41  KAESAKFKSMKKRKLPHTCSRKGYARLAEDM 72
           +A+S KFKSMK+ +LP T  RK Y RLAE+M
Sbjct: 313 QAKSEKFKSMKEMQLPST-RRKSYTRLAEEM 342

HSP 3 Score: 111.7 bits (278), Expect = 5.8e-22
Identity = 55/71 (77.46%), Postives = 60/71 (84.51%), Query Frame = 1


Query: 1   MVKQIQSTSNNEELSKMKPSNIQSTQDLMDFVNEKKSKRFKAESAKFKSMKKRKLPHTCS 60
           +V QIQSTS NEEL KMKPSN+QS  D MDFV EKKS  FKA+S KFKSMKK +LPHTCS
Sbjct: 548 IVSQIQSTSTNEELVKMKPSNVQSMHDWMDFVKEKKSATFKAKSEKFKSMKKMQLPHTCS 607

Query: 61  RKGYARLAEDM 72
           RKGYARLAE+M
Sbjct: 608 RKGYARLAEEM 618

[Close]

BLAST of MELO3C003031 vs. NCBI nr
Match: gi|778676496|ref|XP_011650597.1| (PREDICTED: uncharacterized protein LOC101217008 isoform X7 [Cucumis sativus])

HSP 1 Score: 109.0 bits (271), Expect = 3.8e-21
Identity = 53/72 (73.61%), Postives = 62/72 (86.11%), Query Frame = 1


Query: 1   MVKQIQSTSNNEELSKMKPSNIQSTQDLMDFVNEKKSKRFKAESAKFKSMKKRKLPHTCS 60
           +V QIQSTS +EEL KMKPSNI+S  D M+FV EKKS  FKA+S KFKSMKK++LPHTCS
Sbjct: 886 IVSQIQSTSTSEELVKMKPSNIKSMHDWMNFVKEKKSAMFKAKSEKFKSMKKKQLPHTCS 945

Query: 61  RKGYARLAEDMV 73
           RKGYARLAE+M+
Sbjct: 946 RKGYARLAEEMI 957

HSP 2 Score: 93.2 bits (230), Expect = 2.2e-16
Identity = 49/71 (69.01%), Postives = 56/71 (78.87%), Query Frame = 1


Query: 1   MVKQIQSTSNNEELSKMKPSNIQSTQDLMDFVNEKKSKRFKAESAKFKSMKKRKLPHTCS 60
           ++ QIQSTS NEEL KMKPSNIQS  D M+FV EKKS RFKA+S KFKSMK+ +LP T  
Sbjct: 239 ILSQIQSTSTNEELVKMKPSNIQSVHDWMEFVKEKKSTRFKAKSEKFKSMKEMQLPST-R 298

Query: 61  RKGYARLAEDM 72
           RK Y RLAE+M
Sbjct: 299 RKSYTRLAEEM 308

HSP 3 Score: 111.7 bits (278), Expect = 5.8e-22
Identity = 55/71 (77.46%), Postives = 60/71 (84.51%), Query Frame = 1


Query: 1   MVKQIQSTSNNEELSKMKPSNIQSTQDLMDFVNEKKSKRFKAESAKFKSMKKRKLPHTCS 60
           +V QIQSTS NEEL KMKPSN+QS  D MDFV EKKS  FKA+S KFKSMKK +LPHTCS
Sbjct: 548 IVSQIQSTSTNEELVKMKPSNVQSMHDWMDFVKEKKSATFKAKSEKFKSMKKMQLPHTCS 607

Query: 61  RKGYARLAEDM 72
           RKGYARLAE+M
Sbjct: 608 RKGYARLAEEM 618

[Close]

BLAST of MELO3C003031 vs. NCBI nr
Match: gi|778676478|ref|XP_011650589.1| (PREDICTED: uncharacterized protein LOC101217008 isoform X1 [Cucumis sativus])

HSP 1 Score: 107.8 bits (268), Expect = 8.4e-21
Identity = 53/71 (74.65%), Postives = 61/71 (85.92%), Query Frame = 1


Query: 1   MVKQIQSTSNNEELSKMKPSNIQSTQDLMDFVNEKKSKRFKAESAKFKSMKKRKLPHTCS 60
           +V QIQSTS +EEL KMKPSNI+S  D M+FV EKKS  FKA+S KFKSMKK++LPHTCS
Sbjct: 886 IVSQIQSTSTSEELVKMKPSNIKSMHDWMNFVKEKKSAMFKAKSEKFKSMKKKQLPHTCS 945

Query: 61  RKGYARLAEDM 72
           RKGYARLAE+M
Sbjct: 946 RKGYARLAEEM 956

HSP 2 Score: 93.2 bits (230), Expect = 2.2e-16
Identity = 49/71 (69.01%), Postives = 56/71 (78.87%), Query Frame = 1


Query: 1   MVKQIQSTSNNEELSKMKPSNIQSTQDLMDFVNEKKSKRFKAESAKFKSMKKRKLPHTCS 60
           ++ QIQSTS NEEL KMKPSNIQS  D M+FV EKKS RFKA+S KFKSMK+ +LP T  
Sbjct: 239 ILSQIQSTSTNEELVKMKPSNIQSVHDWMEFVKEKKSTRFKAKSEKFKSMKEMQLPST-R 298

Query: 61  RKGYARLAEDM 72
           RK Y RLAE+M
Sbjct: 299 RKSYTRLAEEM 308

HSP 3 Score: 111.7 bits (278), Expect = 5.8e-22
Identity = 55/71 (77.46%), Postives = 60/71 (84.51%), Query Frame = 1


Query: 1   MVKQIQSTSNNEELSKMKPSNIQSTQDLMDFVNEKKSKRFKAESAKFKSMKKRKLPHTCS 60
           +V QIQSTS NEEL KMKPSN+QS  D MDFV EKKS  FKA+S KFKSMKK +LPHTCS
Sbjct: 545 IVSQIQSTSTNEELVKMKPSNVQSMHDWMDFVKEKKSATFKAKSEKFKSMKKMQLPHTCS 604

Query: 61  RKGYARLAEDM 72
           RKGYARLAE+M
Sbjct: 605 RKGYARLAEEM 615

[Close]

BLAST of MELO3C003031 vs. NCBI nr
Match: gi|778676482|ref|XP_011650591.1| (PREDICTED: uncharacterized protein LOC101217008 isoform X2 [Cucumis sativus])

HSP 1 Score: 107.8 bits (268), Expect = 8.4e-21
Identity = 53/71 (74.65%), Postives = 61/71 (85.92%), Query Frame = 1


Query: 1   MVKQIQSTSNNEELSKMKPSNIQSTQDLMDFVNEKKSKRFKAESAKFKSMKKRKLPHTCS 60
           +V QIQSTS +EEL KMKPSNI+S  D M+FV EKKS  FKA+S KFKSMKK++LPHTCS
Sbjct: 883 IVSQIQSTSTSEELVKMKPSNIKSMHDWMNFVKEKKSAMFKAKSEKFKSMKKKQLPHTCS 942

Query: 61  RKGYARLAEDM 72
           RKGYARLAE+M
Sbjct: 943 RKGYARLAEEM 953

HSP 2 Score: 93.2 bits (230), Expect = 2.2e-16
Identity = 49/71 (69.01%), Postives = 56/71 (78.87%), Query Frame = 1


Query: 1   MVKQIQSTSNNEELSKMKPSNIQSTQDLMDFVNEKKSKRFKAESAKFKSMKKRKLPHTCS 60
           ++ QIQSTS NEEL KMKPSNIQS  D M+FV EKKS RFKA+S KFKSMK+ +LP T  
Sbjct: 239 ILSQIQSTSTNEELVKMKPSNIQSVHDWMEFVKEKKSTRFKAKSEKFKSMKEMQLPST-R 298

Query: 61  RKGYARLAEDM 72
           RK Y RLAE+M
Sbjct: 299 RKSYTRLAEEM 308

HSP 3 Score: 111.7 bits (278), Expect = 5.8e-22
Identity = 55/71 (77.46%), Postives = 60/71 (84.51%), Query Frame = 1


Query: 1   MVKQIQSTSNNEELSKMKPSNIQSTQDLMDFVNEKKSKRFKAESAKFKSMKKRKLPHTCS 60
           +V QIQSTS NEEL KMKPSN+QS  D MDFV EKKS  FKA+S KFKSMKK +LPHTCS
Sbjct: 548 IVSQIQSTSTNEELVKMKPSNVQSMHDWMDFVKEKKSATFKAKSEKFKSMKKMQLPHTCS 607

Query: 61  RKGYARLAEDM 72
           RKGYARLAE+M
Sbjct: 608 RKGYARLAEEM 618

The following BLAST results are available for this feature:

BLAST of MELO3C003031 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5I2_CUCSA	4.1e-22	77.46	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G113900 PE=4 SV=1	[more]
A0A0A0L5I2_CUCSA	1.6e-05	56.60	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G113900 PE=4 SV=1	[more]
Q9C6V0_ARATH	5.3e-06	44.29	En/Spm-like transposon protein, putative OS=Arabidopsis thaliana GN=F27M3_21 PE=...	[more]

BLAST of MELO3C003031 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700201166\|gb\|KGN56299.1\|	5.8e-22	77.46	hypothetical protein Csa_3G113900 [Cucumis sativus]	[more]
gi\|700201166\|gb\|KGN56299.1\|	2.2e-05	56.60	hypothetical protein Csa_3G113900 [Cucumis sativus]	[more]
gi\|778676496\|ref\|XP_011650597.1\|	3.8e-21	73.61	PREDICTED: uncharacterized protein LOC101217008 isoform X7 [Cucumis sativus]	[more]
gi\|778676478\|ref\|XP_011650589.1\|	8.4e-21	74.65	PREDICTED: uncharacterized protein LOC101217008 isoform X1 [Cucumis sativus]	[more]
gi\|778676482\|ref\|XP_011650591.1\|	8.4e-21	74.65	PREDICTED: uncharacterized protein LOC101217008 isoform X2 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C003031T1	MELO3C003031T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C003031	Cucumber (Chinese Long) v3	cucmeB351
MELO3C003031	Watermelon (97103) v2	mewmbB020
MELO3C003031	Wax gourd	mewgoB010
MELO3C003031	Cucumber (Gy14) v1	cgymeB419
MELO3C003031	Cucurbita maxima (Rimu)	cmameB636
MELO3C003031	Cucurbita moschata (Rifu)	cmomeB626
MELO3C003031	Wild cucumber (PI 183967)	cpimeB343
MELO3C003031	Cucumber (Chinese Long) v2	cumeB350
MELO3C003031	Watermelon (Charleston Gray)	mewcgB023
MELO3C003031	Cucurbita pepo (Zucchini)	cpemeB360
MELO3C003031	Bottle gourd (USVL1VR-Ls)	lsimeB007
MELO3C003031	Cucumber (Gy14) v2	cgybmeB294