MELO3C003021 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C003021
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Zinc finger family protein
Location	chr9 : 10127668 .. 10128135 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACCGGCAAACTACCACACTGCCGGCGGCAGTGGAAGCGTAGGAAGTGATTCAACGCTGCCTCTTAGATTCCCAACGAGAATGTTCTCTGGGTCGTCTCCAGGCACGCTTCTGCCACAGCCGCCCCCACCACCGCTACCTTCATCGCATCAGCCGTATCTATACAACTCACCGACGCGGCCGTCTAGTTTCCCTTCCTACTATCCTCCTCCACAAGCCTCGATCAACGACTACTACGTGGGACATGTCTTGGGGAACCCTTCTCAATGCAGCCATCAGACAGTGAACTACGGTTCTAGCCCGGTGGAGTCGAGTAGCTACACTTGCATCGGAGCTCCGGTAGGACATGCTGCAGCAGGGTTCGGTGGACGAGATGGTGGTGGGAGTGGCGGTAGAGATGGATCACAGCAGCAGCAGCGCTTGGACGTTCCTTCTTCGATCAATCGGTTTCAAGATGGATTCTAA

mRNA sequence

ATGGCACCGGCAAACTACCACACTGCCGGCGGCAGTGGAAGCGTAGGAAGTGATTCAACGCTGCCTCTTAGATTCCCAACGAGAATGTTCTCTGGGTCGTCTCCAGGCACGCTTCTGCCACAGCCGCCCCCACCACCGCTACCTTCATCGCATCAGCCGTATCTATACAACTCACCGACGCGGCCGTCTAGTTTCCCTTCCTACTATCCTCCTCCACAAGCCTCGATCAACGACTACTACGTGGGACATGTCTTGGGGAACCCTTCTCAATGCAGCCATCAGACAGTGAACTACGGTTCTAGCCCGGTGGAGTCGAGTAGCTACACTTGCATCGGAGCTCCGGTAGGACATGCTGCAGCAGGGTTCGGTGGACGAGATGGTGGTGGGAGTGGCGGTAGAGATGGATCACAGCAGCAGCAGCGCTTGGACGTTCCTTCTTCGATCAATCGGTTTCAAGATGGATTCTAA

Coding sequence (CDS)

ATGGCACCGGCAAACTACCACACTGCCGGCGGCAGTGGAAGCGTAGGAAGTGATTCAACGCTGCCTCTTAGATTCCCAACGAGAATGTTCTCTGGGTCGTCTCCAGGCACGCTTCTGCCACAGCCGCCCCCACCACCGCTACCTTCATCGCATCAGCCGTATCTATACAACTCACCGACGCGGCCGTCTAGTTTCCCTTCCTACTATCCTCCTCCACAAGCCTCGATCAACGACTACTACGTGGGACATGTCTTGGGGAACCCTTCTCAATGCAGCCATCAGACAGTGAACTACGGTTCTAGCCCGGTGGAGTCGAGTAGCTACACTTGCATCGGAGCTCCGGTAGGACATGCTGCAGCAGGGTTCGGTGGACGAGATGGTGGTGGGAGTGGCGGTAGAGATGGATCACAGCAGCAGCAGCGCTTGGACGTTCCTTCTTCGATCAATCGGTTTCAAGATGGATTCTAA

Protein sequence

MAPANYHTAGGSGSVGSDSTLPLRFPTRMFSGSSPGTLLPQPPPPPLPSSHQPYLYNSPTRPSSFPSYYPPPQASINDYYVGHVLGNPSQCSHQTVNYGSSPVESSSYTCIGAPVGHAAAGFGGRDGGGSGGRDGSQQQQRLDVPSSINRFQDGF*

Homology

[Close]

BLAST of MELO3C003021 vs. TrEMBL
Match: A0A0A0KTC2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G372190 PE=4 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 1.0e-85
Identity = 151/155 (97.42%), Postives = 153/155 (98.71%), Query Frame = 1


Query: 1   MAPANYHTAGGSGSVGSDSTLPLRFPTRMFSGSSPGTLLPQPPPPPLPSSHQPYLYNSPT 60
           MAPANYH+AGGSG+VGSDSTLPLRFPTRMFSGSSPGTLLPQPPPPPLPSSHQPYLYNSPT
Sbjct: 112 MAPANYHSAGGSGNVGSDSTLPLRFPTRMFSGSSPGTLLPQPPPPPLPSSHQPYLYNSPT 171

Query: 61  RPSSFPSYYPPPQASINDYYVGHVLGNPSQCSHQTVNYGSSPVESSSYTCIGAPVGHAAA 120
           RPSSFPSYYPPPQASINDYYVGHVLGNPSQCSHQTVNYGSS VESSSYTCIGAPVGHAA 
Sbjct: 172 RPSSFPSYYPPPQASINDYYVGHVLGNPSQCSHQTVNYGSSSVESSSYTCIGAPVGHAAV 231

Query: 121 GFGGRDGGGSGGRDGSQQQQRLDVPSSINRFQDGF 156
           GFGGRDGGGSGGRDGSQQQQRLDVPSSINRFQDGF
Sbjct: 232 GFGGRDGGGSGGRDGSQQQQRLDVPSSINRFQDGF 266

[Close]

BLAST of MELO3C003021 vs. TrEMBL
Match: M5XJF7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022855mg PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 4.3e-39
Identity = 95/184 (51.63%), Postives = 109/184 (59.24%), Query Frame = 1


Query: 1   MAPANYHTAGGSGS-VGSDSTLPLRFPTRMFSGSSPGTLLPQPPPPPLPSS-----HQPY 60
           + PA YH    +G+ +G D TLPLRFP RMFSGSS  TL+P PPPP +P        QPY
Sbjct: 116 ITPAGYHHPAAAGNNIGGDPTLPLRFPARMFSGSSSSTLVPPPPPPAVPQPGVQPPQQPY 175

Query: 61  LYNSPTRPSSFPSYYPPPQASINDYYVGHVLGNPSQCS-------HQTVNYGSSPVESSS 120
           LY+SP+RP    S+YP  Q S+NDYYVGHVL + S  S       H  VNYG+SP E ++
Sbjct: 176 LYSSPSRPMFPASHYPHHQHSVNDYYVGHVLSSTSSSSPSQYGHGHPNVNYGASPPEPAN 235

Query: 121 YTCIGAPVGHAAAGFGGRDGGGSGGRDGSQQ----------------QQRLDVPSSINRF 156
           YTCIGAPVG       G  GGG GGRDGS                  QQRLD P SINRF
Sbjct: 236 YTCIGAPVG------PGGGGGGGGGRDGSLHMNQEEGLNWSRSYAGTQQRLDPPPSINRF 293

[Close]

BLAST of MELO3C003021 vs. TrEMBL
Match: F6HEW5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g03600 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 3.0e-32
Identity = 94/189 (49.74%), Postives = 106/189 (56.08%), Query Frame = 1


Query: 1   MAPANYHTAGGSGSVGSDSTLPLR--FPTRMFSGSSPGTLLPQPPPPPLPSSHQPYLYNS 60
           +AP ++H  G  G    D TLP R  +PTRMFSGSS  TLL  PP        QPYLY S
Sbjct: 180 IAPGSFHQTGNMG----DPTLPFRSVYPTRMFSGSS-STLLTPPP--------QPYLYAS 239

Query: 61  PTRPSSFPSYYPPPQASINDYYVGHVLGNPSQCSHQTVNYGSSPVESSSYTCIGAPVGH- 120
           P+R  S+PS YPPP  S+NDYYVGHVL + SQ SH  +NYG +    S+YTCIGAPVGH 
Sbjct: 240 PSRLVSYPSQYPPP--SMNDYYVGHVLSSGSQYSHPGLNYGGA--SDSNYTCIGAPVGHG 299

Query: 121 ----------------AAAGFGGRDGGGSGGRDGSQQ---------------QQRLDVPS 156
                              G GG  GGG GGRDGS Q               QQR+D PS
Sbjct: 300 FPPSNGGGRGSELGGSGGGGGGGGGGGGGGGRDGSLQNQEEGLNWGRSYAGSQQRMD-PS 350

[Close]

BLAST of MELO3C003021 vs. TrEMBL
Match: W9RUU4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_014642 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.3e-30
Identity = 84/156 (53.85%), Postives = 98/156 (62.82%), Query Frame = 1


Query: 3   PANYHTAGGSGSVGSDSTLPLRFPTRMFSGSSPGTLLPQPPPPPLPSS----HQPYLYNS 62
           P +YH     G++G D+TLPLRFPTRMFS SS   + P PPPPPLPS      QPYLY S
Sbjct: 121 PGSYHHHPPPGNIGPDTTLPLRFPTRMFSNSSSSFISP-PPPPPLPSQAVQPSQPYLYTS 180

Query: 63  PTRPSSFPSYYPPPQ-ASIND-YYVGHVL----GNPSQCSHQTVNYGSSPVESSSYTCIG 122
           PTRP SF S+YP  Q A++ND YYVGHVL     + SQ  H  ++Y ++    S+YTCIG
Sbjct: 181 PTRPLSFSSHYPAHQHAAVNDNYYVGHVLSSNTSSTSQYCHPNISYAAA--AESNYTCIG 240

Query: 123 APVGHA---AAGFG---------GRDGGGSGGRDGS 137
           APVGHA     G G         G  GGGSGGRDGS
Sbjct: 241 APVGHAHGFVPGSGRAAAELAESGSVGGGSGGRDGS 273

[Close]

BLAST of MELO3C003021 vs. TrEMBL
Match: A0A067K2Z0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18334 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 3.1e-29
Identity = 87/176 (49.43%), Postives = 102/176 (57.95%), Query Frame = 1


Query: 1   MAPANYHTAGGSGSVGSDSTLPLR--FPT-RMFSGSSPGTLLPQPPPPPLPS-SHQPYLY 60
           MA  +YH +   G        P R  +PT R+FSGSS   LLP PP PP P  +HQPYLY
Sbjct: 82  MAAGSYHPSSNIGD-------PYRSVYPTGRLFSGSSSSALLPPPPAPPQPPPTHQPYLY 141

Query: 61  NSPTRPSSFPSYYP-----PPQASINDYYVGHVLGN--PSQCSHQTVNYGSSPVESSSYT 120
            SP+R   +PS YP       Q  INDYY+GHVL N  PSQ +    NY +   + S+YT
Sbjct: 142 TSPSRLPPYPSQYPHHHHHQQQQPINDYYIGHVLNNSSPSQ-TFPPHNYNNMGSQDSNYT 201

Query: 121 CIGAPVGHAAA-GFGGRDGGGS---GGRDGS------QQQQRLDVPSSINRFQDGF 156
           CIGAPVGH +  G GG    GS    GRDGS       QQQR+D  +SINRFQDGF
Sbjct: 202 CIGAPVGHGSGFGLGGGSSRGSDQGSGRDGSLSSYAGTQQQRMDPTTSINRFQDGF 249

[Close]

BLAST of MELO3C003021 vs. NCBI nr
Match: gi|659131633|ref|XP_008465782.1| (PREDICTED: zinc finger protein JAGGED [Cucumis melo])

HSP 1 Score: 331.3 bits (848), Expect = 9.4e-88
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 1


Query: 1   MAPANYHTAGGSGSVGSDSTLPLRFPTRMFSGSSPGTLLPQPPPPPLPSSHQPYLYNSPT 60
           MAPANYHTAGGSGSVGSDSTLPLRFPTRMFSGSSPGTLLPQPPPPPLPSSHQPYLYNSPT
Sbjct: 110 MAPANYHTAGGSGSVGSDSTLPLRFPTRMFSGSSPGTLLPQPPPPPLPSSHQPYLYNSPT 169

Query: 61  RPSSFPSYYPPPQASINDYYVGHVLGNPSQCSHQTVNYGSSPVESSSYTCIGAPVGHAAA 120
           RPSSFPSYYPPPQASINDYYVGHVLGNPSQCSHQTVNYGSSPVESSSYTCIGAPVGHAAA
Sbjct: 170 RPSSFPSYYPPPQASINDYYVGHVLGNPSQCSHQTVNYGSSPVESSSYTCIGAPVGHAAA 229

Query: 121 GFGGRDGGGSGGRDGSQQQQRLDVPSSINRFQDGF 156
           GFGGRDGGGSGGRDGSQQQQRLDVPSSINRFQDGF
Sbjct: 230 GFGGRDGGGSGGRDGSQQQQRLDVPSSINRFQDGF 264

[Close]

BLAST of MELO3C003021 vs. NCBI nr
Match: gi|778702278|ref|XP_011655169.1| (PREDICTED: zinc finger protein JAGGED [Cucumis sativus])

HSP 1 Score: 323.9 bits (829), Expect = 1.5e-85
Identity = 151/155 (97.42%), Postives = 153/155 (98.71%), Query Frame = 1


Query: 1   MAPANYHTAGGSGSVGSDSTLPLRFPTRMFSGSSPGTLLPQPPPPPLPSSHQPYLYNSPT 60
           MAPANYH+AGGSG+VGSDSTLPLRFPTRMFSGSSPGTLLPQPPPPPLPSSHQPYLYNSPT
Sbjct: 109 MAPANYHSAGGSGNVGSDSTLPLRFPTRMFSGSSPGTLLPQPPPPPLPSSHQPYLYNSPT 168

Query: 61  RPSSFPSYYPPPQASINDYYVGHVLGNPSQCSHQTVNYGSSPVESSSYTCIGAPVGHAAA 120
           RPSSFPSYYPPPQASINDYYVGHVLGNPSQCSHQTVNYGSS VESSSYTCIGAPVGHAA 
Sbjct: 169 RPSSFPSYYPPPQASINDYYVGHVLGNPSQCSHQTVNYGSSSVESSSYTCIGAPVGHAAV 228

Query: 121 GFGGRDGGGSGGRDGSQQQQRLDVPSSINRFQDGF 156
           GFGGRDGGGSGGRDGSQQQQRLDVPSSINRFQDGF
Sbjct: 229 GFGGRDGGGSGGRDGSQQQQRLDVPSSINRFQDGF 263

[Close]

BLAST of MELO3C003021 vs. NCBI nr
Match: gi|700195779|gb|KGN50956.1| (hypothetical protein Csa_5G372190 [Cucumis sativus])

HSP 1 Score: 323.9 bits (829), Expect = 1.5e-85
Identity = 151/155 (97.42%), Postives = 153/155 (98.71%), Query Frame = 1


Query: 1   MAPANYHTAGGSGSVGSDSTLPLRFPTRMFSGSSPGTLLPQPPPPPLPSSHQPYLYNSPT 60
           MAPANYH+AGGSG+VGSDSTLPLRFPTRMFSGSSPGTLLPQPPPPPLPSSHQPYLYNSPT
Sbjct: 112 MAPANYHSAGGSGNVGSDSTLPLRFPTRMFSGSSPGTLLPQPPPPPLPSSHQPYLYNSPT 171

Query: 61  RPSSFPSYYPPPQASINDYYVGHVLGNPSQCSHQTVNYGSSPVESSSYTCIGAPVGHAAA 120
           RPSSFPSYYPPPQASINDYYVGHVLGNPSQCSHQTVNYGSS VESSSYTCIGAPVGHAA 
Sbjct: 172 RPSSFPSYYPPPQASINDYYVGHVLGNPSQCSHQTVNYGSSSVESSSYTCIGAPVGHAAV 231

Query: 121 GFGGRDGGGSGGRDGSQQQQRLDVPSSINRFQDGF 156
           GFGGRDGGGSGGRDGSQQQQRLDVPSSINRFQDGF
Sbjct: 232 GFGGRDGGGSGGRDGSQQQQRLDVPSSINRFQDGF 266

[Close]

BLAST of MELO3C003021 vs. NCBI nr
Match: gi|645276701|ref|XP_008243413.1| (PREDICTED: zinc finger protein JAGGED [Prunus mume])

HSP 1 Score: 174.1 bits (440), Expect = 1.9e-40
Identity = 98/186 (52.69%), Postives = 112/186 (60.22%), Query Frame = 1


Query: 1   MAPANYHTAGGSGS-VGSDSTLPLRFPTRMFSGSSPGTLLPQPPPPPLPS-----SHQPY 60
           + PA YH    +G+ +G D TL LRFP RMFSGSS   L+P PPPP +P        QPY
Sbjct: 135 ITPAGYHHPAAAGNNIGGDPTLTLRFPARMFSGSSSSALVPPPPPPGVPQPGVQPPQQPY 194

Query: 61  LYNSPTRPSSFP-SYYPPPQASINDYYVGHVLGNPSQCS--------HQTVNYGSSPVES 120
           LY+SP+RP SFP S+YP  Q S+NDYYVGHVL + S  S        H  VNYG+SP E 
Sbjct: 195 LYSSPSRPMSFPASHYPHHQHSVNDYYVGHVLSSTSSSSSPSQYGHGHPNVNYGASPPEP 254

Query: 121 SSYTCIGAPVGHAAAGFGGRDGGGSGGRDGSQQ----------------QQRLDVPSSIN 156
           ++YTCIGAPVG    G GG  GGG GGRDGS                  QQRLD P SIN
Sbjct: 255 ANYTCIGAPVGPGGGGGGG--GGGGGGRDGSLHMNQEEGLNWSRSYAGTQQRLDPPPSIN 314

[Close]

BLAST of MELO3C003021 vs. NCBI nr
Match: gi|596258237|ref|XP_007224850.1| (hypothetical protein PRUPE_ppa022855mg [Prunus persica])

HSP 1 Score: 169.1 bits (427), Expect = 6.2e-39
Identity = 95/184 (51.63%), Postives = 109/184 (59.24%), Query Frame = 1


Query: 1   MAPANYHTAGGSGS-VGSDSTLPLRFPTRMFSGSSPGTLLPQPPPPPLPSS-----HQPY 60
           + PA YH    +G+ +G D TLPLRFP RMFSGSS  TL+P PPPP +P        QPY
Sbjct: 116 ITPAGYHHPAAAGNNIGGDPTLPLRFPARMFSGSSSSTLVPPPPPPAVPQPGVQPPQQPY 175

Query: 61  LYNSPTRPSSFPSYYPPPQASINDYYVGHVLGNPSQCS-------HQTVNYGSSPVESSS 120
           LY+SP+RP    S+YP  Q S+NDYYVGHVL + S  S       H  VNYG+SP E ++
Sbjct: 176 LYSSPSRPMFPASHYPHHQHSVNDYYVGHVLSSTSSSSPSQYGHGHPNVNYGASPPEPAN 235

Query: 121 YTCIGAPVGHAAAGFGGRDGGGSGGRDGSQQ----------------QQRLDVPSSINRF 156
           YTCIGAPVG       G  GGG GGRDGS                  QQRLD P SINRF
Sbjct: 236 YTCIGAPVG------PGGGGGGGGGRDGSLHMNQEEGLNWSRSYAGTQQRLDPPPSINRF 293

The following BLAST results are available for this feature:

BLAST of MELO3C003021 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KTC2_CUCSA	1.0e-85	97.42	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G372190 PE=4 SV=1	[more]
M5XJF7_PRUPE	4.3e-39	51.63	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022855mg PE=4 SV=1	[more]
F6HEW5_VITVI	3.0e-32	49.74	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g03600 PE=4 SV=...	[more]
W9RUU4_9ROSA	1.3e-30	53.85	Uncharacterized protein OS=Morus notabilis GN=L484_014642 PE=4 SV=1	[more]
A0A067K2Z0_JATCU	3.1e-29	49.43	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18334 PE=4 SV=1	[more]

BLAST of MELO3C003021 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659131633\|ref\|XP_008465782.1\|	9.4e-88	100.00	PREDICTED: zinc finger protein JAGGED [Cucumis melo]	[more]
gi\|778702278\|ref\|XP_011655169.1\|	1.5e-85	97.42	PREDICTED: zinc finger protein JAGGED [Cucumis sativus]	[more]
gi\|700195779\|gb\|KGN50956.1\|	1.5e-85	97.42	hypothetical protein Csa_5G372190 [Cucumis sativus]	[more]
gi\|645276701\|ref\|XP_008243413.1\|	1.9e-40	52.69	PREDICTED: zinc finger protein JAGGED [Prunus mume]	[more]
gi\|596258237\|ref\|XP_007224850.1\|	6.2e-39	51.63	hypothetical protein PRUPE_ppa022855mg [Prunus persica]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007275	multicellular organism development
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C003021T1	MELO3C003021T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C003021	Csa5G372190	Cucumber (Chinese Long) v2	cumeB350
MELO3C003021	ClCG03G009600	Watermelon (Charleston Gray)	mewcgB023
MELO3C003021	Cla97C03G060680	Watermelon (97103) v2	mewmbB020
MELO3C003021	CSPI05G14010	Wild cucumber (PI 183967)	cpimeB343
MELO3C003021	Cucsa.248390	Cucumber (Gy14) v1	cgymeB419
MELO3C003021	CmaCh04G020430	Cucurbita maxima (Rimu)	cmameB632
MELO3C003021	CmoCh15G010340	Cucurbita moschata (Rifu)	cmomeB251
MELO3C003021	Lsi09G010340	Bottle gourd (USVL1VR-Ls)	lsimeB007
MELO3C003021	Cp4.1LG01g17840	Cucurbita pepo (Zucchini)	cpemeB352
MELO3C003021	CsaV3_5G023110	Cucumber (Chinese Long) v3	cucmeB351

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C003021	Cucumber (Gy14) v2	cgybmeB294