MELO3C002884 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C002884
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Leucine-rich repeat (LRR) family protein
Location	chr9 : 6948532 .. 6948745 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGCAGAAGCCTCCTCTTCAACAAAAGCTATGGAAACCAGACTGACTAGTGTAGAGAAATCTGTAGGTGAAATTCAAGGCGAGTTAGGTGAAATCCGTTCTATGCGGGGGGAAATTTTACAGAACTTAAATATCAATTCTGAAACCAACAGAGAGTATGCTGAATTAGCTCCAAACAAAGGAAGTCAGATCCAAGAACGACAAGATTTGG

mRNA sequence

ATGGATGCAGAAGCCTCCTCTTCAACAAAAGCTATGGAAACCAGACTGACTAGTGTAGAGAAATCTGTAGGTGAAATTCAAGGCGAGTTAGGTGAAATCCGTTCTATGCGGGGGGAAATTTTACAGAACTTAAATATCAATTCTGAAACCAACAGAGAGTATGCTGAATTAGCTCCAAACAAAGGAAGTCAGATCCAAGAACGACAAGATTTGG

Coding sequence (CDS)

ATGGATGCAGAAGCCTCCTCTTCAACAAAAGCTATGGAAACCAGACTGACTAGTGTAGAGAAATCTGTAGGTGAAATTCAAGGCGAGTTAGGTGAAATCCGTTCTATGCGGGGGGAAATTTTACAGAACTTAAATATCAATTCTGAAACCAACAGAGAGTATGCTGAATTAGCTCCAAACAAAGGAAGTCAGATCCAAGAACGACAAGATTTGG

Protein sequence

MDAEASSSTKAMETRLTSVEKSVGEIQGELGEIRSMRGEILQNLNINSETNREYAELAPNKGSQIQERQDL

Homology

[Close]

BLAST of MELO3C002884 vs. TrEMBL
Match: A0A0A0KQP4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G494380 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 4.2e-18
Identity = 52/60 (86.67%), Postives = 54/60 (90.00%), Query Frame = 1


Query: 12 METRLTSVEKSVGEIQGELGEIRSMRGEILQNLNINSETNREYAELAPNKGSQIQERQDL 71
          METRLT+VEKSVGEIQGEL EI SM  EILQNLNINSETNRE+AELAPNK  QIQERQDL
Sbjct: 1  METRLTNVEKSVGEIQGELDEICSMPWEILQNLNINSETNREHAELAPNKKIQIQERQDL 60

[Close]

BLAST of MELO3C002884 vs. TrEMBL
Match: A0A0A0L2A5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G441080 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 4.7e-17
Identity = 51/70 (72.86%), Postives = 59/70 (84.29%), Query Frame = 1


Query: 1  MDAEASSSTKAMETRLTSVEKSVGEIQGELGEIRSMRGEILQNLNINSETNREYAELAPN 60
          MDAEASSS+KAMETRLT+VEK+VGEIQGELGEI SM GEILQNL I  ET++E A+LA  
Sbjct: 1  MDAEASSSSKAMETRLTNVEKTVGEIQGELGEIHSMLGEILQNLTITFETHKEPAKLALI 60

Query: 61 KGSQIQERQD 71
          +  QI E+QD
Sbjct: 61 QRKQILEKQD 70

[Close]

BLAST of MELO3C002884 vs. NCBI nr
Match: gi|700196042|gb|KGN51219.1| (hypothetical protein Csa_5G494380 [Cucumis sativus])

HSP 1 Score: 98.2 bits (243), Expect = 6.1e-18
Identity = 52/60 (86.67%), Postives = 54/60 (90.00%), Query Frame = 1


Query: 12 METRLTSVEKSVGEIQGELGEIRSMRGEILQNLNINSETNREYAELAPNKGSQIQERQDL 71
          METRLT+VEKSVGEIQGEL EI SM  EILQNLNINSETNRE+AELAPNK  QIQERQDL
Sbjct: 1  METRLTNVEKSVGEIQGELDEICSMPWEILQNLNINSETNREHAELAPNKKIQIQERQDL 60

[Close]

BLAST of MELO3C002884 vs. NCBI nr
Match: gi|700199584|gb|KGN54742.1| (hypothetical protein Csa_4G441080 [Cucumis sativus])

HSP 1 Score: 94.7 bits (234), Expect = 6.7e-17
Identity = 51/70 (72.86%), Postives = 59/70 (84.29%), Query Frame = 1


Query: 1  MDAEASSSTKAMETRLTSVEKSVGEIQGELGEIRSMRGEILQNLNINSETNREYAELAPN 60
          MDAEASSS+KAMETRLT+VEK+VGEIQGELGEI SM GEILQNL I  ET++E A+LA  
Sbjct: 1  MDAEASSSSKAMETRLTNVEKTVGEIQGELGEIHSMLGEILQNLTITFETHKEPAKLALI 60

Query: 61 KGSQIQERQD 71
          +  QI E+QD
Sbjct: 61 QRKQILEKQD 70

The following BLAST results are available for this feature:

BLAST of MELO3C002884 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQP4_CUCSA	4.2e-18	86.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G494380 PE=4 SV=1	[more]
A0A0A0L2A5_CUCSA	4.7e-17	72.86	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G441080 PE=4 SV=1	[more]

BLAST of MELO3C002884 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700196042\|gb\|KGN51219.1\|	6.1e-18	86.67	hypothetical protein Csa_5G494380 [Cucumis sativus]	[more]
gi\|700199584\|gb\|KGN54742.1\|	6.7e-17	72.86	hypothetical protein Csa_4G441080 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C002884T1	MELO3C002884T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C002884	Csa5G494380	Cucumber (Chinese Long) v2	cumeB361
MELO3C002884	CSPI05G16830	Wild cucumber (PI 183967)	cpimeB350
MELO3C002884	CsaV3_5G025840	Cucumber (Chinese Long) v3	cucmeB359

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C002884	Cucumber (Gy14) v1	cgymeB460
MELO3C002884	Cucurbita maxima (Rimu)	cmameB251
MELO3C002884	Cucurbita maxima (Rimu)	cmameB634
MELO3C002884	Cucurbita moschata (Rifu)	cmomeB239
MELO3C002884	Cucurbita moschata (Rifu)	cmomeB624
MELO3C002884	Watermelon (Charleston Gray)	mewcgB002
MELO3C002884	Watermelon (97103) v1	mewmB003
MELO3C002884	Cucurbita pepo (Zucchini)	cpemeB155
MELO3C002884	Cucurbita pepo (Zucchini)	cpemeB358
MELO3C002884	Bottle gourd (USVL1VR-Ls)	lsimeB162
MELO3C002884	Cucumber (Gy14) v2	cgybmeB300
MELO3C002884	Silver-seed gourd	carmeB0260
MELO3C002884	Silver-seed gourd	carmeB0682
MELO3C002884	Watermelon (97103) v2	mewmbB038
MELO3C002884	Wax gourd	mewgoB030