CsaV3_5G025840 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_5G025840
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr5 : 21038752 .. 21039057 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAACCAGACTGACTAATGTAGAGAAATCTGTAGGTGAAATTCAAGGCGAGTTAGATGAAATCTGTTCTATGCCGTGGGAAATTTTACAGAACTTAAATATCAATTCTGAAACCAACAGAGAGCATGCTGAATTAGCTCCAAACAAAAAAATTCAGATCCAAGAACGACAAGATTTGGGCGACGACAGAGCTGTCAACTTTAATTCTTCACTAAATGAAGCCAAGAACCTTGCAAGAAACCCAGCCAAACAAAAGATTGTCAAATATCCTTATAAAAAATTAAAGATGAAAACAGTCCAATGA

mRNA sequence

ATGGAAACCAGACTGACTAATGTAGAGAAATCTGTAGGTGAAATTCAAGGCGAGTTAGATGAAATCTGTTCTATGCCGTGGGAAATTTTACAGAACTTAAATATCAATTCTGAAACCAACAGAGAGCATGCTGAATTAGCTCCAAACAAAAAAATTCAGATCCAAGAACGACAAGATTTGGGCGACGACAGAGCTGTCAACTTTAATTCTTCACTAAATGAAGCCAAGAACCTTGCAAGAAACCCAGCCAAACAAAAGATTGTCAAATATCCTTATAAAAAATTAAAGATGAAAACAGTCCAATGA

Coding sequence (CDS)

ATGGAAACCAGACTGACTAATGTAGAGAAATCTGTAGGTGAAATTCAAGGCGAGTTAGATGAAATCTGTTCTATGCCGTGGGAAATTTTACAGAACTTAAATATCAATTCTGAAACCAACAGAGAGCATGCTGAATTAGCTCCAAACAAAAAAATTCAGATCCAAGAACGACAAGATTTGGGCGACGACAGAGCTGTCAACTTTAATTCTTCACTAAATGAAGCCAAGAACCTTGCAAGAAACCCAGCCAAACAAAAGATTGTCAAATATCCTTATAAAAAATTAAAGATGAAAACAGTCCAATGA

Protein sequence

METRLTNVEKSVGEIQGELDEICSMPWEILQNLNINSETNREHAELAPNKKIQIQERQDLGDDRAVNFNSSLNEAKNLARNPAKQKIVKYPYKKLKMKTVQ

Homology

[Close]

BLAST of CsaV3_5G025840 vs. NCBI nr
Match: KGN51219.1 (hypothetical protein Csa_5G494380 [Cucumis sativus])

HSP 1 Score: 199.9 bits (507), Expect = 4.2e-48
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   METRLTNVEKSVGEIQGELDEICSMPWEILQNLNINSETNREHAELAPNKKIQIQERQDL 60
           METRLTNVEKSVGEIQGELDEICSMPWEILQNLNINSETNREHAELAPNKKIQIQERQDL
Sbjct: 1   METRLTNVEKSVGEIQGELDEICSMPWEILQNLNINSETNREHAELAPNKKIQIQERQDL 60

Query: 61  GDDRAVNFNSSLNEAKNLARNPAKQKIVKYPYKKLKMKTVQ 102
           GDDRAVNFNSSLNEAKNLARNPAKQKIVKYPYKKLKMKTVQ
Sbjct: 61  GDDRAVNFNSSLNEAKNLARNPAKQKIVKYPYKKLKMKTVQ 101

[Close]

BLAST of CsaV3_5G025840 vs. NCBI nr
Match: KGN54742.1 (hypothetical protein Csa_4G441080 [Cucumis sativus])

HSP 1 Score: 75.1 bits (183), Expect = 1.5e-10
Identity = 45/98 (45.92%), Postives = 56/98 (57.14%), Query Frame = 0


Query: 1   METRLTNVEKSVGEIQGELDEICSMPWEILQNLNINSETNREHAELAPNKKIQIQERQDL 60
           METRLTNVEK+V                  QNL I  ET++E A+LA  ++ QI E+QD 
Sbjct: 12  METRLTNVEKTVXXXXXXXXXXXXXXXXXXQNLTITFETHKEPAKLALIQRKQILEKQDS 71

Query: 61  GDDRAVNFNSSLNEAKNLARNPAKQKIVKYPYKKLKMK 99
           GDD A N N  LNE  + ARN  K KI + PY + +MK
Sbjct: 72  GDDMAANINFPLNEGTDFARNLGKTKITRNPYPEFQMK 109

[Close]

BLAST of CsaV3_5G025840 vs. TrEMBL
Match: tr|A0A0A0KQP4|A0A0A0KQP4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G494380 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 2.7e-48
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   METRLTNVEKSVGEIQGELDEICSMPWEILQNLNINSETNREHAELAPNKKIQIQERQDL 60
           METRLTNVEKSVGEIQGELDEICSMPWEILQNLNINSETNREHAELAPNKKIQIQERQDL
Sbjct: 1   METRLTNVEKSVGEIQGELDEICSMPWEILQNLNINSETNREHAELAPNKKIQIQERQDL 60

Query: 61  GDDRAVNFNSSLNEAKNLARNPAKQKIVKYPYKKLKMKTVQ 102
           GDDRAVNFNSSLNEAKNLARNPAKQKIVKYPYKKLKMKTVQ
Sbjct: 61  GDDRAVNFNSSLNEAKNLARNPAKQKIVKYPYKKLKMKTVQ 101

[Close]

BLAST of CsaV3_5G025840 vs. TrEMBL
Match: tr|A0A0A0L2A5|A0A0A0L2A5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G441080 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.0e-10
Identity = 45/98 (45.92%), Postives = 56/98 (57.14%), Query Frame = 0


Query: 1   METRLTNVEKSVGEIQGELDEICSMPWEILQNLNINSETNREHAELAPNKKIQIQERQDL 60
           METRLTNVEK+V                  QNL I  ET++E A+LA  ++ QI E+QD 
Sbjct: 12  METRLTNVEKTVXXXXXXXXXXXXXXXXXXQNLTITFETHKEPAKLALIQRKQILEKQDS 71

Query: 61  GDDRAVNFNSSLNEAKNLARNPAKQKIVKYPYKKLKMK 99
           GDD A N N  LNE  + ARN  K KI + PY + +MK
Sbjct: 72  GDDMAANINFPLNEGTDFARNLGKTKITRNPYPEFQMK 109

The following BLAST results are available for this feature:

BLAST of CsaV3_5G025840 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN51219.1	4.2e-48	100.00	hypothetical protein Csa_5G494380 [Cucumis sativus]	[more]
KGN54742.1	1.5e-10	45.92	hypothetical protein Csa_4G441080 [Cucumis sativus]	[more]

BLAST of CsaV3_5G025840 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G025840 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G025840 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KQP4\|A0A0A0KQP4_CUCSA	2.7e-48	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G494380 PE=4 SV=1	[more]
tr\|A0A0A0L2A5\|A0A0A0L2A5_CUCSA	1.0e-10	45.92	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G441080 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G025840.1	CsaV3_5G025840.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_5G025840	CSPI05G16830	Wild cucumber (PI 183967)	cpicucB284
CsaV3_5G025840	MELO3C002884	Melon (DHL92) v3.5.1	cucmeB359
CsaV3_5G025840	MELO3C002884.2	Melon (DHL92) v3.6.1	cucmedB351

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_5G025840	Silver-seed gourd	carcucB0297
CsaV3_5G025840	Silver-seed gourd	carcucB0724
CsaV3_5G025840	Cucumber (Gy14) v2	cgybcucB232
CsaV3_5G025840	Cucumber (Gy14) v1	cgycucB422
CsaV3_5G025840	Cucurbita maxima (Rimu)	cmacucB0354
CsaV3_5G025840	Cucurbita maxima (Rimu)	cmacucB0862
CsaV3_5G025840	Cucurbita maxima (Rimu)	cmacucB0892
CsaV3_5G025840	Cucurbita moschata (Rifu)	cmocucB0349
CsaV3_5G025840	Cucurbita moschata (Rifu)	cmocucB0848
CsaV3_5G025840	Cucurbita moschata (Rifu)	cmocucB0935
CsaV3_5G025840	Cucurbita pepo (Zucchini)	cpecucB0129
CsaV3_5G025840	Cucurbita pepo (Zucchini)	cpecucB0211
CsaV3_5G025840	Cucurbita pepo (Zucchini)	cpecucB0519
CsaV3_5G025840	Cucurbita pepo (Zucchini)	cpecucB0550
CsaV3_5G025840	Bottle gourd (USVL1VR-Ls)	cuclsiB370
CsaV3_5G025840	Watermelon (Charleston Gray)	cucwcgB362
CsaV3_5G025840	Watermelon (97103) v1	cucwmB387
CsaV3_5G025840	Watermelon (97103) v2	cucwmbB424
CsaV3_5G025840	Wax gourd	cucwgoB475