MELO3C002323 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C002323
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Pentatricopeptide repeat-containing protein, putative
Location	chr12 : 23695638 .. 23695901 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTTACGCCTTTGTACGTGTTCGCGATTTCAAAAGAGCTTTCTTCTATCACAAGAAGATGGTAAAAAGTGGACAAGTGCCTGATGTAAAGTCATACCAGAAACTTAAATCGATCTTGGATGTAAAACTTGCTACAAAGAACAGGAAAGACAAGAGTGCCATTCTTGGTATAATAAACAGCAAAATGGGTATGGTGAAAGCAAAGCAGAAAGGCAAGAAAGATGAGTTTTGGAAGACCAAGAGAAGGCATGTAAGAACTTAG

mRNA sequence

ATGATTTACGCCTTTGTACGTGTTCGCGATTTCAAAAGAGCTTTCTTCTATCACAAGAAGATGGTAAAAAGTGGACAAGTGCCTGATGTAAAGTCATACCAGAAACTTAAATCGATCTTGGATGTAAAACTTGCTACAAAGAACAGGAAAGACAAGAGTGCCATTCTTGGTATAATAAACAGCAAAATGGGTATGGTGAAAGCAAAGCAGAAAGGCAAGAAAGATGAGTTTTGGAAGACCAAGAGAAGGCATGTAAGAACTTAG

Coding sequence (CDS)

ATGATTTACGCCTTTGTACGTGTTCGCGATTTCAAAAGAGCTTTCTTCTATCACAAGAAGATGGTAAAAAGTGGACAAGTGCCTGATGTAAAGTCATACCAGAAACTTAAATCGATCTTGGATGTAAAACTTGCTACAAAGAACAGGAAAGACAAGAGTGCCATTCTTGGTATAATAAACAGCAAAATGGGTATGGTGAAAGCAAAGCAGAAAGGCAAGAAAGATGAGTTTTGGAAGACCAAGAGAAGGCATGTAAGAACTTAG

Protein sequence

MIYAFVRVRDFKRAFFYHKKMVKSGQVPDVKSYQKLKSILDVKLATKNRKDKSAILGIINSKMGMVKAKQKGKKDEFWKTKRRHVRT*

Homology

[Close]

BLAST of MELO3C002323 vs. Swiss-Prot
Match: PP426_ARATH (Pentatricopeptide repeat-containing protein At5g50280, chloroplastic OS=Arabidopsis thaliana GN=EMB1006 PE=2 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 2.7e-31
Identity = 66/81 (81.48%), Postives = 70/81 (86.42%), Query Frame = 1


Query: 1   MIYAFVRVRDFKRAFFYHKKMVKSGQVPDVKSYQKLKSILDVKLATKNRKDKSAILGIIN 60
           MIYAFVRVRDFKRAFFYHK MVKSGQVPD +SY+KL++IL+ K  TKNRKDK+AILGIIN
Sbjct: 631 MIYAFVRVRDFKRAFFYHKMMVKSGQVPDPRSYEKLRAILEDKAKTKNRKDKTAILGIIN 690

Query: 61  SKMGMVKAKQKGKKDEFWKTK 82
           SK G VKAK KGKKDEFWK K
Sbjct: 691 SKFGRVKAKTKGKKDEFWKYK 711

[Close]

BLAST of MELO3C002323 vs. TrEMBL
Match: A0A0A0LWH7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050000 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 2.2e-40
Identity = 85/87 (97.70%), Postives = 87/87 (100.00%), Query Frame = 1


Query: 1   MIYAFVRVRDFKRAFFYHKKMVKSGQVPDVKSYQKLKSILDVKLATKNRKDKSAILGIIN 60
           MIYAFVRVRDFKRAFFYHKKMVKSGQVPDVKSYQKLKSILDVKLATKNRKDKSAILGIIN
Sbjct: 619 MIYAFVRVRDFKRAFFYHKKMVKSGQVPDVKSYQKLKSILDVKLATKNRKDKSAILGIIN 678

Query: 61  SKMGMVKAKQKGKKDEFWKTKRRHVRT 88
           SKMGMVKAK++GKKDEFWKTKRRHVRT
Sbjct: 679 SKMGMVKAKKQGKKDEFWKTKRRHVRT 705

[Close]

BLAST of MELO3C002323 vs. TrEMBL
Match: V4TNK4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10019054mg PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 3.9e-37
Identity = 78/87 (89.66%), Postives = 85/87 (97.70%), Query Frame = 1


Query: 1   MIYAFVRVRDFKRAFFYHKKMVKSGQVPDVKSYQKLKSILDVKLATKNRKDKSAILGIIN 60
           MIYAFVRVRDFKRAFFYHK+MVKSGQVPDVKSY+KL+SILDVK+ATKNR+DKSAILGIIN
Sbjct: 623 MIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSILDVKVATKNRRDKSAILGIIN 682

Query: 61  SKMGMVKAKQKGKKDEFWKTKRRHVRT 88
           SKMGMVKAK+KGKKDEFWK K+RH RT
Sbjct: 683 SKMGMVKAKKKGKKDEFWKYKKRHPRT 709

[Close]

BLAST of MELO3C002323 vs. TrEMBL
Match: A0A067FPS3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g044251mg PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 3.9e-37
Identity = 78/87 (89.66%), Postives = 85/87 (97.70%), Query Frame = 1


Query: 1   MIYAFVRVRDFKRAFFYHKKMVKSGQVPDVKSYQKLKSILDVKLATKNRKDKSAILGIIN 60
           MIYAFVRVRDFKRAFFYHK+MVKSGQVPDVKSY+KL+SILDVK+ATKNR+DKSAILGIIN
Sbjct: 593 MIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSILDVKVATKNRRDKSAILGIIN 652

Query: 61  SKMGMVKAKQKGKKDEFWKTKRRHVRT 88
           SKMGMVKAK+KGKKDEFWK K+RH RT
Sbjct: 653 SKMGMVKAKKKGKKDEFWKYKKRHPRT 679

[Close]

BLAST of MELO3C002323 vs. TrEMBL
Match: A0A061G5M6_THECC (Pentatricopeptide repeat superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_014542 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.2e-33
Identity = 72/87 (82.76%), Postives = 81/87 (93.10%), Query Frame = 1


Query: 1   MIYAFVRVRDFKRAFFYHKKMVKSGQVPDVKSYQKLKSILDVKLATKNRKDKSAILGIIN 60
           MIYAFVRVRDFKRAF+YHK+MVKSGQVPDVKSY+KLK+ILDVK A KN+KD+SAILGIIN
Sbjct: 627 MIYAFVRVRDFKRAFYYHKQMVKSGQVPDVKSYEKLKAILDVKAAKKNKKDRSAILGIIN 686

Query: 61  SKMGMVKAKQKGKKDEFWKTKRRHVRT 88
           SKMGMVKAK+K KKDE WK K+RH +T
Sbjct: 687 SKMGMVKAKRKTKKDELWKNKKRHHKT 713

[Close]

BLAST of MELO3C002323 vs. TrEMBL
Match: A0A0D2N683_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G062100 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 9.9e-33
Identity = 71/87 (81.61%), Postives = 82/87 (94.25%), Query Frame = 1


Query: 1   MIYAFVRVRDFKRAFFYHKKMVKSGQVPDVKSYQKLKSILDVKLATKNRKDKSAILGIIN 60
           MIYAFVRVRDFKRAF+YHK+MVK+GQVPDVKSY+KL+SILDVK A +N++DKSAILGIIN
Sbjct: 635 MIYAFVRVRDFKRAFYYHKQMVKNGQVPDVKSYKKLRSILDVKAAKQNKRDKSAILGIIN 694

Query: 61  SKMGMVKAKQKGKKDEFWKTKRRHVRT 88
           SKMGMVKAK+K KKDEFWK K+R+ RT
Sbjct: 695 SKMGMVKAKRKTKKDEFWKYKKRNHRT 721

[Close]

BLAST of MELO3C002323 vs. TAIR10
Match: AT5G50280.1 (AT5G50280.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 135.6 bits (340), Expect = 1.5e-32
Identity = 66/81 (81.48%), Postives = 70/81 (86.42%), Query Frame = 1


Query: 1   MIYAFVRVRDFKRAFFYHKKMVKSGQVPDVKSYQKLKSILDVKLATKNRKDKSAILGIIN 60
           MIYAFVRVRDFKRAFFYHK MVKSGQVPD +SY+KL++IL+ K  TKNRKDK+AILGIIN
Sbjct: 631 MIYAFVRVRDFKRAFFYHKMMVKSGQVPDPRSYEKLRAILEDKAKTKNRKDKTAILGIIN 690

Query: 61  SKMGMVKAKQKGKKDEFWKTK 82
           SK G VKAK KGKKDEFWK K
Sbjct: 691 SKFGRVKAKTKGKKDEFWKYK 711

[Close]

BLAST of MELO3C002323 vs. NCBI nr
Match: gi|659067377|ref|XP_008439140.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g50280, chloroplastic [Cucumis melo])

HSP 1 Score: 175.6 bits (444), Expect = 3.7e-41
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 1


Query: 1   MIYAFVRVRDFKRAFFYHKKMVKSGQVPDVKSYQKLKSILDVKLATKNRKDKSAILGIIN 60
           MIYAFVRVRDFKRAFFYHKKMVKSGQVPDVKSYQKLKSILDVKLATKNRKDKSAILGIIN
Sbjct: 625 MIYAFVRVRDFKRAFFYHKKMVKSGQVPDVKSYQKLKSILDVKLATKNRKDKSAILGIIN 684

Query: 61  SKMGMVKAKQKGKKDEFWKTKRRHVRT 88
           SKMGMVKAKQKGKKDEFWKTKRRHVRT
Sbjct: 685 SKMGMVKAKQKGKKDEFWKTKRRHVRT 711

[Close]

BLAST of MELO3C002323 vs. NCBI nr
Match: gi|778657971|ref|XP_004152584.2| (PREDICTED: pentatricopeptide repeat-containing protein At5g50280, chloroplastic [Cucumis sativus])

HSP 1 Score: 172.6 bits (436), Expect = 3.2e-40
Identity = 85/87 (97.70%), Postives = 87/87 (100.00%), Query Frame = 1


Query: 1   MIYAFVRVRDFKRAFFYHKKMVKSGQVPDVKSYQKLKSILDVKLATKNRKDKSAILGIIN 60
           MIYAFVRVRDFKRAFFYHKKMVKSGQVPDVKSYQKLKSILDVKLATKNRKDKSAILGIIN
Sbjct: 619 MIYAFVRVRDFKRAFFYHKKMVKSGQVPDVKSYQKLKSILDVKLATKNRKDKSAILGIIN 678

Query: 61  SKMGMVKAKQKGKKDEFWKTKRRHVRT 88
           SKMGMVKAK++GKKDEFWKTKRRHVRT
Sbjct: 679 SKMGMVKAKKQGKKDEFWKTKRRHVRT 705

[Close]

BLAST of MELO3C002323 vs. NCBI nr
Match: gi|641850527|gb|KDO69399.1| (hypothetical protein CISIN_1g044251mg [Citrus sinensis])

HSP 1 Score: 161.8 bits (408), Expect = 5.6e-37
Identity = 78/87 (89.66%), Postives = 85/87 (97.70%), Query Frame = 1


Query: 1   MIYAFVRVRDFKRAFFYHKKMVKSGQVPDVKSYQKLKSILDVKLATKNRKDKSAILGIIN 60
           MIYAFVRVRDFKRAFFYHK+MVKSGQVPDVKSY+KL+SILDVK+ATKNR+DKSAILGIIN
Sbjct: 593 MIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSILDVKVATKNRRDKSAILGIIN 652

Query: 61  SKMGMVKAKQKGKKDEFWKTKRRHVRT 88
           SKMGMVKAK+KGKKDEFWK K+RH RT
Sbjct: 653 SKMGMVKAKKKGKKDEFWKYKKRHPRT 679

[Close]

BLAST of MELO3C002323 vs. NCBI nr
Match: gi|567895014|ref|XP_006439995.1| (hypothetical protein CICLE_v10019054mg [Citrus clementina])

HSP 1 Score: 161.8 bits (408), Expect = 5.6e-37
Identity = 78/87 (89.66%), Postives = 85/87 (97.70%), Query Frame = 1


Query: 1   MIYAFVRVRDFKRAFFYHKKMVKSGQVPDVKSYQKLKSILDVKLATKNRKDKSAILGIIN 60
           MIYAFVRVRDFKRAFFYHK+MVKSGQVPDVKSY+KL+SILDVK+ATKNR+DKSAILGIIN
Sbjct: 623 MIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSILDVKVATKNRRDKSAILGIIN 682

Query: 61  SKMGMVKAKQKGKKDEFWKTKRRHVRT 88
           SKMGMVKAK+KGKKDEFWK K+RH RT
Sbjct: 683 SKMGMVKAKKKGKKDEFWKYKKRHPRT 709

[Close]

BLAST of MELO3C002323 vs. NCBI nr
Match: gi|568846190|ref|XP_006476940.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g50280, chloroplastic [Citrus sinensis])

HSP 1 Score: 161.8 bits (408), Expect = 5.6e-37
Identity = 78/87 (89.66%), Postives = 85/87 (97.70%), Query Frame = 1


Query: 1   MIYAFVRVRDFKRAFFYHKKMVKSGQVPDVKSYQKLKSILDVKLATKNRKDKSAILGIIN 60
           MIYAFVRVRDFKRAFFYHK+MVKSGQVPDVKSY+KL+SILDVK+ATKNR+DKSAILGIIN
Sbjct: 619 MIYAFVRVRDFKRAFFYHKQMVKSGQVPDVKSYEKLRSILDVKVATKNRRDKSAILGIIN 678

Query: 61  SKMGMVKAKQKGKKDEFWKTKRRHVRT 88
           SKMGMVKAK+KGKKDEFWK K+RH RT
Sbjct: 679 SKMGMVKAKKKGKKDEFWKYKKRHPRT 705

The following BLAST results are available for this feature:

BLAST of MELO3C002323 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PP426_ARATH	2.7e-31	81.48	Pentatricopeptide repeat-containing protein At5g50280, chloroplastic OS=Arabidop...	[more]

BLAST of MELO3C002323 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LWH7_CUCSA	2.2e-40	97.70	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050000 PE=4 SV=1	[more]
V4TNK4_9ROSI	3.9e-37	89.66	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10019054mg PE=4 SV=1	[more]
A0A067FPS3_CITSI	3.9e-37	89.66	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g044251mg PE=4 SV=1	[more]
A0A061G5M6_THECC	1.2e-33	82.76	Pentatricopeptide repeat superfamily protein isoform 1 OS=Theobroma cacao GN=TCM...	[more]
A0A0D2N683_GOSRA	9.9e-33	81.61	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G062100 PE=4 SV=1	[more]

BLAST of MELO3C002323 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G50280.1	1.5e-32	81.48	Pentatricopeptide repeat (PPR) superfamily protein	[more]

BLAST of MELO3C002323 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659067377\|ref\|XP_008439140.1\|	3.7e-41	100.00	PREDICTED: pentatricopeptide repeat-containing protein At5g50280, chloroplastic ...	[more]
gi\|778657971\|ref\|XP_004152584.2\|	3.2e-40	97.70	PREDICTED: pentatricopeptide repeat-containing protein At5g50280, chloroplastic ...	[more]
gi\|641850527\|gb\|KDO69399.1\|	5.6e-37	89.66	hypothetical protein CISIN_1g044251mg [Citrus sinensis]	[more]
gi\|567895014\|ref\|XP_006439995.1\|	5.6e-37	89.66	hypothetical protein CICLE_v10019054mg [Citrus clementina]	[more]
gi\|568846190\|ref\|XP_006476940.1\|	5.6e-37	89.66	PREDICTED: pentatricopeptide repeat-containing protein At5g50280, chloroplastic ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C002323T1	MELO3C002323T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	TIGRFAMs	TIGR00756	TIGR00756	coord: 1..30 score: 3.
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 1..36 score: 1.1
None	No IPR available	PANTHER	PTHR24015:SF606	SUBFAMILY NOT NAMED	coord: 1..36 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C002323	Csa1G050000	Cucumber (Chinese Long) v2	cumeB027
MELO3C002323	Cla002575	Watermelon (97103) v1	mewmB149
MELO3C002323	ClCG03G003340	Watermelon (Charleston Gray)	mewcgB152
MELO3C002323	Cla97C03G054410	Watermelon (97103) v2	mewmbB156
MELO3C002323	CSPI01G09080	Wild cucumber (PI 183967)	cpimeB024
MELO3C002323	Cucsa.391640	Cucumber (Gy14) v1	cgymeB642
MELO3C002323	CmaCh13G007720	Cucurbita maxima (Rimu)	cmameB197
MELO3C002323	CmoCh13G008010	Cucurbita moschata (Rifu)	cmomeB183
MELO3C002323	Lsi02G004580	Bottle gourd (USVL1VR-Ls)	lsimeB179
MELO3C002323	Cp4.1LG20g03460	Cucurbita pepo (Zucchini)	cpemeB470
MELO3C002323	Carg07567	Silver-seed gourd	carmeB0978
MELO3C002323	CsaV3_1G009150	Cucumber (Chinese Long) v3	cucmeB024

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C002323	Wild cucumber (PI 183967)	cpimeB015
MELO3C002323	Watermelon (Charleston Gray)	mewcgB158
MELO3C002323	Watermelon (Charleston Gray)	mewcgB160
MELO3C002323	Watermelon (Charleston Gray)	mewcgB161
MELO3C002323	Watermelon (97103) v1	mewmB155
MELO3C002323	Cucurbita pepo (Zucchini)	cpemeB026
MELO3C002323	Cucurbita pepo (Zucchini)	cpemeB603
MELO3C002323	Bottle gourd (USVL1VR-Ls)	lsimeB289
MELO3C002323	Bottle gourd (USVL1VR-Ls)	lsimeB392
MELO3C002323	Bottle gourd (USVL1VR-Ls)	lsimeB465
MELO3C002323	Cucumber (Gy14) v2	cgybmeB022
MELO3C002323	Silver-seed gourd	carmeB0499
MELO3C002323	Watermelon (97103) v2	mewmbB165
MELO3C002323	Wax gourd	mewgoB175
MELO3C002323	Melon (DHL92) v3.5.1	memeB067
MELO3C002323	Melon (DHL92) v3.5.1	memeB068
MELO3C002323	Cucurbita maxima (Rimu)	cmameB051
MELO3C002323	Cucurbita maxima (Rimu)	cmameB088
MELO3C002323	Cucurbita maxima (Rimu)	cmameB365
MELO3C002323	Cucurbita moschata (Rifu)	cmomeB041
MELO3C002323	Cucurbita moschata (Rifu)	cmomeB356