LsiUNG000940 (gene) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: five_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.CAACATTCGTTAAGCGGAGGATTATTTATCAATTATCCAATTGTGAGCTGGTTCGGTCATGCTTACAAACAACACAACAATACAATACAAGTTATATCCAAAGTCAACTATTTCATGCTCAGCTCTCGATTTTTCTCGTCAATTTCCTGTCTGTATCAGACTATCAAATTTCAGAGTTTGCGAGTTCCGACTGTTTAGGTACAAAACCATTCAACTGCTTCCCTCTTACTTCCATTCTTTTCTGCTCTTACTTCTTACCTCCCTTTTTATCCAAAATGTAATGTCTTCATCTTCCTAAGTTGACTTCACTTGAAGATGCGGAAATCAGTGGGGACTCTTCTGATTTTCTTTTTCCTGCTCTCCATTTTCAGTATTTCATCCCCAGGATTTGGAGACACCTTCACCTCTAAATTCAATTTGTTAACCCCAAAATTCTCCTCGCGTTTTCATCGCTTATATCGTCATTCGCATATATTTGGACCAAGGTTGTTAATTTTTGTTTTTTTTATCCCTTTTTCTTTTACACCCACAATTGTAGATTTTCATCTTGGATGAAAATTTTGAGATACTCAATTTTTGGATTCTGTTTCGAGCTGGTGTTGTATGTTAATTCTTTAATATGAACTAAGTGTTTGATTAAATGCGCAAGTGAGAACTTTTTTTTTCCTTATGGTCAACGTGTTGTGCAGAGCATTAGTTAGAGGACATTCGAATATAGCTTCAGTCGTTAGAAGTTTGAAAATGGGAAAAGGGCCCTTGCTAGAGGAGTTTACATTTCCTGCTAATTCTGTTCCTTTCAACAACTGTCATGCTTCTACAATTGTGGAGGTTTGGTTTGATGGAGAAACTTCATTTGATCTTATAATAATTTTGTTAGGGGAGAATCTGAGTTTTTTCTTTCTGGATAGAGCAGGTTGATAAAGATCATTACTTGGTTGCATATTTTGGGGGTACATTTGAGGGCGCACCGGATGTGAAGATTTGGTTGCAGACATATAAGGTAAACAAGCTGATCCGATTTATTATTCCCCAATGCCTATGAAAGAAGGCCTAATTACTTGAACATTGTTCTCATCTGAGTTATGTTCTGCTTGATTGCTGATATGCTTTCTCAAATTATACTACTGTAAAATTCACTCTCCCTCCTTGCCTTTGTTTATGTCAAAACAGGCAGCTGGCTTTTTTATCCATCTTATTGAGTGGTTTAGAAGAGATTTATATAACTTTTTAACTTTCCTCGTTGATGTTCATTTCTTGCTAGATTGTCCACTTGTAATTTTTCGCTAGCATTCATTAGAAGGGCTGCTAACAATTTTACTCAAGTTATGCAGACATAGTTGGACAAGCAATAACTCTTTTTATCTTGCCATGCCCACGTTGAGGCCCTTATTTCTGTAATGATTTCTTGTTAAAATTATTGGTAAATTTAACTTGCAGAACGGCTCCTGGCACCCACCAATCGTGGCTGATGAGGAGCCTGATGTTCCAATGTGGAACCCTGTCTTGTTCAAACTTCCATCAGATGAGCTGCTTTTGTTTTATAGAGTGGGCCAAGACGTTCAAAGGTATATCATTTTTAAGCTCATAATGGCTTTCTGAAATAACAGCTCTACACAAGTTAATTTCTTTTATATTTGATTCAAGTTTCAATAAATTTATTGGACCATACGACTCCCATGGTGGCAGTGGCACTGTCTTTTCAGCCAGCAATTGCGAGACATGGATTTGGAATCCATTTCATTTGATAACATTATTTAAATCCATGTCATTTGAAAACATTATTTATCATATCAAAGAGTTCAGTATCAGGGCCGCCAAACCCATGTTACGGAATTCTTAATCGTCAAGAAGCTAATAATTGCTACCAAGGATATATATAAGATGTCTTATAAATAAAATGATCATAGGAAGTTGATGTGCTCAAGTTAGTTGGTTTCATAAATTATGCTTTCTAAAAAGAGCCTTAATACCTTTTCCTTGAAATCCCAAGGCACCCTTCTTTTGACTGGTTCACTCCAGTCTCCAGTGACCAACTGTCTAACATATTGAATAACTTTTTAAGTGAAAAGTTAATCCCTTCTGCTTCCAATTTTGTTTGATTCTATCTTATGCTGATGGAGATAACAATCAGATGGAGTGGGTGCATGAAGCGGTCATATGACAAAGGCGTTACTTGGACAGCAAGAGAACAGCTTCCTCCTGGTATCTTAGGACCAATAAAGAACAAGGTATAATATATGTGCTGATATCTACCATTTTCAATTAAACTGTTTTTGCTCAAGAAGCTGTCTTCTTTCTTTGTCTGATGCTGTAGCCAATCTTGCTGGAAAATGGGGTTTTGCTCTGCGGATCTTCAGTTGAAAGTTGGAACTCTTGGGGTGCATGGATGGAGGTTATTATGAATAGTTCTTTAGTTTTGACTTGTCCTAAAATCTGGAAAATGTGACTGACATGTCAATATAACAGGCCACATCTGATTCAGGTAGAACATGGAGAAAGTTTGGCCCAATATACATGGAAAATCGATCTCTCAGTGTCATTCAACCAGCTCCTTACCAGACTGCAAATGGAAATCTGCGTGTTTTACTTCGATCCTTCACAGGTATTGGTAGTATTTGTATGTCAGAATCCACTGATGGTGGTCACAACTGGAGCTATGCAAAACCTACAAATCTTCCTAATCCAAACTCAGGTAACATGGTTGAGCTACATGCATTACCTGTAACTGCAAGCATCTTTGTACTGTTAGGAATGCAACTAGGAATATTAAGGTATATAACTAGATAGGGAGGCAGTTGTGGAGTTCAGTTATAAATAGAGGGAGTTAGGCATTTGGTGGGTGAATTAGGGTTTGGGAGATATCTCTAGTAATTTCTTCTTTGTATTGCAATATATTAGTTTCGTATGTTTTCTGTATTTGGATACCTAGCACATACATGAACGTCAGTCTTGTGAGCATCTTCATTATGAAATTGAATTACTTCCCAGATTTAGCAATTTCTGATCTTATAAGCTTGTCATGCATTGTCACAAGCAGAGATGGCTGATCTTACTACAACTTAGATTCCAACATTTCATCTTTGACTATGTAATCTTATCAATAGGTATTGATGGAGTCAAACTGAGGGATGGTCGTTTATTACTGGTTTATAACACGGTATCGAGAGGTGTGCTTAAGGTTGGACTGTCTCTGGATGATGGTGACTCATGGCTAGATGTCATGACCTTGGAGGATGAGCCAGGAAAGGAATTCTCATATCCAGCCGTCATTGAGGCTAGTGATGGCTCAATTCACATCACATACACATACAAGAGAGAGCAGATTAAGGTATGAAGAGGTTGATATCTGATCTAAAAGATACATTTGTGACCAACAACATCAAGTTTTTGTTATTGCCTACTTTCCCATTTTCCATTGATCGCTCTATTAGATACCATAAAACTTCATGTTTTTTTTTCTTTAGTTCTGAAATTTCTTAACCTATGTTTCTATACTTGATTGCCGGAGATTAACTCCATCATCATTTTTTGGGGCAGCATGTTGTCTTCAAACTGAAAATGCATGGGAAACATTGACGATGATAACTAAGAAAGCAAAGCTCTGTATCTGTTTGAAAGCGATGGTGAAGCTGTGATATTGGAATAAAGTGCTGAGTTATGGTGCATCATTTGTACATTTAGGTAAATATGATTGTTTTTACTGTGGTGTATCCATCAAGATGACTCGGATTGAGCTTATGGCAGAACTCTTGGATGTATTACTATAATTTTCTTTTTGGGTGAGAATGGATTGTAGTTGTAATGTTGTATCAGTTAAAGACGTGTTTGAGTGAAAGAATAAGTTAATATCATTCTTATAGAATCTATCTGTAAAATAATCCTTCGGGAATTTCCAAGATCGTTAAATGTTAGGAGTAGTTGCAAATATAGTAATTAGCAGATATAGCACAGTGCAAAAAAATTTTACAAATATAACAAAATTTAGATCAAACTCTGTGAGTATTAGTGATGAACCATATCATTGATAGAGTCTATCACTAATAAGAATCGATCAACAATAGTCTATTATTGAATGATGGATTTTGCTATATTTGTAGTTTTCTTTTTAAAATATTGCTATACACGTGATTATTATCCCTAAAGGTGCTACTGATTGCAATTAGGAGTGTTACAAAAAACTGAAAAATCGAAAACCAAACCAATCCAAATTGATTCATTGGTTTGGTTTGGTTTTTTAGTATAAAATTGGACATATTGGTTTTTATTTGGAGAAAACTAAAAAGTATTGGTTCAGATCGAATTTTGATTGAAAAAACCAATCAAAACCAAACCAAATAGATGGTATGTATACTCTTAAAAATAAACTCTAACAATATTAGGTATTTTTTAATGGTTTGATTATTATGGTGCATGTATATTTATTGTTTAGAAAAAAAAGATCCATTATTATGGAGTGTGTATGATATTTATTTAGAAAGTACTAAGAAAAAAAAATTAGAATGTCCAATTTCAATCTATAAAATAGAAAATTGACCCAAATTTAATTTAAAAATAGCAAAAATGACAAATTAAAAAAAAAGAAATAAAAATTAAAATTTGGAAGAGAAAAAAATAAAATTTCAAAACCTAAAACCAAACCAAGTAAAAACTAATCCATTGGTTTTGTTCTTCATTAGACATCAGTTTAGATCTCTTCTTTATAAAATCAATTAGTTTAATTTGGTTCTTAGTTGACCTCAAAACCGACAAAATCAAACCAACAATCACTCTAATTGTAATTACCGATATCTAAACCCAAATTGGTTGGGCTCAAAACTCATACTTCTATAGGCCTTAGGTTGGATTCTGAGAGTAACTGCGCCACTTCAGGATGCACTAAGACAATGCAGAGGCCCAAAAGGTCGGCCTTAA CAACATTCGTTAAGCGGAGGATTATTTATCAATTATCCAATTGTGAGCTGGTTCGGTCATGCTTACAAACAACACAACAATACAATACAAGTTATATCCAAAGTCAACTATTTCATGCTCAGCTCTCGATTTTTCTCGTCAATTTCCTGTCTGTATCAGACTATCAAATTTCAGAGTTTGCGAGTTCCGACTGTTTAGTATTTCATCCCCAGGATTTGGAGACACCTTCACCTCTAAATTCAATTTGTTAACCCCAAAATTCTCCTCGCGTTTTCATCGCTTATATCGTCATTCGCATATATTTGGACCAAGAGCATTAGTTAGAGGACATTCGAATATAGCTTCAGTCGTTAGAAGTTTGAAAATGGGAAAAGGGCCCTTGCTAGAGGAGTTTACATTTCCTGCTAATTCTGTTCCTTTCAACAACTGTCATGCTTCTACAATTGTGGAGGTTGATAAAGATCATTACTTGGTTGCATATTTTGGGGGTACATTTGAGGGCGCACCGGATGTGAAGATTTGGTTGCAGACATATAAGAACGGCTCCTGGCACCCACCAATCGTGGCTGATGAGGAGCCTGATGTTCCAATGTGGAACCCTGTCTTGTTCAAACTTCCATCAGATGAGCTGCTTTTGTTTTATAGAGTGGGCCAAGACGTTCAAAGATGGAGTGGGTGCATGAAGCGGTCATATGACAAAGGCGTTACTTGGACAGCAAGAGAACAGCTTCCTCCTGGTATCTTAGGACCAATAAAGAACAAGCCAATCTTGCTGGAAAATGGGGTTTTGCTCTGCGGATCTTCAGTTGAAAGTTGGAACTCTTGGGGTGCATGGATGGAGGCCACATCTGATTCAGGTAGAACATGGAGAAAGTTTGGCCCAATATACATGGAAAATCGATCTCTCAGTGTCATTCAACCAGCTCCTTACCAGACTGCAAATGGAAATCTGCGTGTTTTACTTCGATCCTTCACAGGTATTGATGGAGTCAAACTGAGGGATGGTCGTTTATTACTGGTTTATAACACGGTATCGAGAGGTGTGCTTAAGGTTGGACTGTCTCTGGATGATGGTGACTCATGGCTAGATGTCATGACCTTGGAGGATGAGCCAGGAAAGGAATTCTCATATCCAGCCGTCATTGAGGCTAGTGATGGCTCAATTCACATCACATACACATACAAGAGAGAGCAGATTAAGGCCTTAGGTTGGATTCTGAGAGTAACTGCGCCACTTCAGGATGCACTAAGACAATGCAGAGGCCCAAAAGGTCGGCCTTAA ATGCTTACAAACAACACAACAATACAATACAAGTTATATCCAAAGTCAACTATTTCATGCTCAGCTCTCGATTTTTCTCGTCAATTTCCTGTCTGTATCAGACTATCAAATTTCAGAGTTTGCGAGTTCCGACTGTTTAGTATTTCATCCCCAGGATTTGGAGACACCTTCACCTCTAAATTCAATTTGTTAACCCCAAAATTCTCCTCGCGTTTTCATCGCTTATATCGTCATTCGCATATATTTGGACCAAGAGCATTAGTTAGAGGACATTCGAATATAGCTTCAGTCGTTAGAAGTTTGAAAATGGGAAAAGGGCCCTTGCTAGAGGAGTTTACATTTCCTGCTAATTCTGTTCCTTTCAACAACTGTCATGCTTCTACAATTGTGGAGGTTGATAAAGATCATTACTTGGTTGCATATTTTGGGGGTACATTTGAGGGCGCACCGGATGTGAAGATTTGGTTGCAGACATATAAGAACGGCTCCTGGCACCCACCAATCGTGGCTGATGAGGAGCCTGATGTTCCAATGTGGAACCCTGTCTTGTTCAAACTTCCATCAGATGAGCTGCTTTTGTTTTATAGAGTGGGCCAAGACGTTCAAAGATGGAGTGGGTGCATGAAGCGGTCATATGACAAAGGCGTTACTTGGACAGCAAGAGAACAGCTTCCTCCTGGTATCTTAGGACCAATAAAGAACAAGCCAATCTTGCTGGAAAATGGGGTTTTGCTCTGCGGATCTTCAGTTGAAAGTTGGAACTCTTGGGGTGCATGGATGGAGGCCACATCTGATTCAGGTAGAACATGGAGAAAGTTTGGCCCAATATACATGGAAAATCGATCTCTCAGTGTCATTCAACCAGCTCCTTACCAGACTGCAAATGGAAATCTGCGTGTTTTACTTCGATCCTTCACAGGTATTGATGGAGTCAAACTGAGGGATGGTCGTTTATTACTGGTTTATAACACGGTATCGAGAGGTGTGCTTAAGGTTGGACTGTCTCTGGATGATGGTGACTCATGGCTAGATGTCATGACCTTGGAGGATGAGCCAGGAAAGGAATTCTCATATCCAGCCGTCATTGAGGCTAGTGATGGCTCAATTCACATCACATACACATACAAGAGAGAGCAGATTAAGGCCTTAGGTTGGATTCTGAGAGTAACTGCGCCACTTCAGGATGCACTAAGACAATGCAGAGGCCCAAAAGGTCGGCCTTAA MLTNNTTIQYKLYPKSTISCSALDFSRQFPVCIRLSNFRVCEFRLFSISSPGFGDTFTSKFNLLTPKFSSRFHRLYRHSHIFGPRALVRGHSNIASVVRSLKMGKGPLLEEFTFPANSVPFNNCHASTIVEVDKDHYLVAYFGGTFEGAPDVKIWLQTYKNGSWHPPIVADEEPDVPMWNPVLFKLPSDELLLFYRVGQDVQRWSGCMKRSYDKGVTWTAREQLPPGILGPIKNKPILLENGVLLCGSSVESWNSWGAWMEATSDSGRTWRKFGPIYMENRSLSVIQPAPYQTANGNLRVLLRSFTGIDGVKLRDGRLLLVYNTVSRGVLKVGLSLDDGDSWLDVMTLEDEPGKEFSYPAVIEASDGSIHITYTYKREQIKALGWILRVTAPLQDALRQCRGPKGRP
BLAST of LsiUNG000940 vs. TrEMBL
Match: R0F0G7_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10028058mg PE=4 SV=1) HSP 1 Score: 461.1 bits (1185), Expect = 1.4e-126 Identity = 210/282 (74.47%), Postives = 239/282 (84.75%), Query Frame = 1
BLAST of LsiUNG000940 vs. TrEMBL
Match: A0A059CSZ9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C02440 PE=4 SV=1) HSP 1 Score: 456.4 bits (1173), Expect = 3.5e-125 Identity = 212/328 (64.63%), Postives = 254/328 (77.44%), Query Frame = 1
BLAST of LsiUNG000940 vs. TrEMBL
Match: A0A059CSB9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C02440 PE=4 SV=1) HSP 1 Score: 455.3 bits (1170), Expect = 7.8e-125 Identity = 208/307 (67.75%), Postives = 246/307 (80.13%), Query Frame = 1
BLAST of LsiUNG000940 vs. TrEMBL
Match: V4WIY4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10008429mg PE=4 SV=1) HSP 1 Score: 448.7 bits (1153), Expect = 7.3e-123 Identity = 220/333 (66.07%), Postives = 250/333 (75.08%), Query Frame = 1
BLAST of LsiUNG000940 vs. TrEMBL
Match: A0A067F4S0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g020796mg PE=4 SV=1) HSP 1 Score: 443.4 bits (1139), Expect = 3.1e-121 Identity = 211/307 (68.73%), Postives = 239/307 (77.85%), Query Frame = 1
BLAST of LsiUNG000940 vs. TAIR10
Match: AT5G57700.3 (AT5G57700.3 BNR/Asp-box repeat family protein) HSP 1 Score: 372.5 bits (955), Expect = 3.4e-103 Identity = 180/295 (61.02%), Postives = 214/295 (72.54%), Query Frame = 1
BLAST of LsiUNG000940 vs. NCBI nr
Match: gi|659107416|ref|XP_008453663.1| (PREDICTED: uncharacterized protein LOC103494313 isoform X1 [Cucumis melo]) HSP 1 Score: 526.2 bits (1354), Expect = 5.2e-146 Identity = 256/316 (81.01%), Postives = 273/316 (86.39%), Query Frame = 1
BLAST of LsiUNG000940 vs. NCBI nr
Match: gi|449464334|ref|XP_004149884.1| (PREDICTED: uncharacterized protein LOC101219119 isoform X1 [Cucumis sativus]) HSP 1 Score: 519.2 bits (1336), Expect = 6.3e-144 Identity = 243/272 (89.34%), Postives = 254/272 (93.38%), Query Frame = 1
BLAST of LsiUNG000940 vs. NCBI nr
Match: gi|731439085|ref|XP_010647630.1| (PREDICTED: uncharacterized protein LOC104878719 [Vitis vinifera]) HSP 1 Score: 476.5 bits (1225), Expect = 4.7e-131 Identity = 224/307 (72.96%), Postives = 251/307 (81.76%), Query Frame = 1
BLAST of LsiUNG000940 vs. NCBI nr
Match: gi|565437231|ref|XP_006281863.1| (hypothetical protein CARUB_v10028058mg [Capsella rubella]) HSP 1 Score: 461.1 bits (1185), Expect = 2.1e-126 Identity = 210/282 (74.47%), Postives = 239/282 (84.75%), Query Frame = 1
BLAST of LsiUNG000940 vs. NCBI nr
Match: gi|702299579|ref|XP_010048700.1| (PREDICTED: uncharacterized protein LOC104437457 isoform X1 [Eucalyptus grandis]) HSP 1 Score: 458.8 bits (1179), Expect = 1.0e-125 Identity = 221/370 (59.73%), Postives = 270/370 (72.97%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: None |