Lsi11G015120 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi11G015120
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Wound-responsive family protein
Location	chr11 : 23564978 .. 23565226 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTCATCAACAAGAACTTTGGTTGTAGCGGCCAGCGTCGGCGTTGTGGAGGCTCTCAAGGATCAAGGAATTTGCCGGTGGAATAATGTCTTAAGATCGGCGCATCACTACACCAGAAACCATGTGGGGTTTATTTCTCAGGCTAAGAAGTTTTCCTCCGCCGTGCCGTCAGCCAACCACGTCCAACAGTCGGAGGAATCTCTGCGGACGGTCATGTACCTTAGCTGTTGGGGTCCTAATAACTGA

mRNA sequence

ATGAGTTCATCAACAAGAACTTTGGTTGTAGCGGCCAGCGTCGGCGTTGTGGAGGCTCTCAAGGATCAAGGAATTTGCCGGTGGAATAATGTCTTAAGATCGGCGCATCACTACACCAGAAACCATGTGGGGTTTATTTCTCAGGCTAAGAAGTTTTCCTCCGCCGTGCCGTCAGCCAACCACGTCCAACAGTCGGAGGAATCTCTGCGGACGGTCATGTACCTTAGCTGTTGGGGTCCTAATAACTGA

Coding sequence (CDS)

ATGAGTTCATCAACAAGAACTTTGGTTGTAGCGGCCAGCGTCGGCGTTGTGGAGGCTCTCAAGGATCAAGGAATTTGCCGGTGGAATAATGTCTTAAGATCGGCGCATCACTACACCAGAAACCATGTGGGGTTTATTTCTCAGGCTAAGAAGTTTTCCTCCGCCGTGCCGTCAGCCAACCACGTCCAACAGTCGGAGGAATCTCTGCGGACGGTCATGTACCTTAGCTGTTGGGGTCCTAATAACTGA

Protein sequence

MSSSTRTLVVAASVGVVEALKDQGICRWNNVLRSAHHYTRNHVGFISQAKKFSSAVPSANHVQQSEESLRTVMYLSCWGPNN

Homology

[Close]

BLAST of Lsi11G015120 vs. TrEMBL
Match: A0A0A0K5N2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G046650 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 4.1e-33
Identity = 71/82 (86.59%), Postives = 76/82 (92.68%), Query Frame = 1


Query: 1  MSSSTRTLVVAASVGVVEALKDQGICRWNNVLRSAHHYTRNHVGFISQAKKFSSAVPSAN 60
          MSSSTR L VAA+VGVVEALKDQGICRWN++LRSAHHY RNHVG +SQAKKFSSAV SAN
Sbjct: 1  MSSSTRALFVAATVGVVEALKDQGICRWNHILRSAHHYARNHVGSLSQAKKFSSAVSSAN 60

Query: 61 HVQQSEESLRTVMYLSCWGPNN 83
           +QQSEESLRTVMYLSCWGPNN
Sbjct: 61 RLQQSEESLRTVMYLSCWGPNN 82

[Close]

BLAST of Lsi11G015120 vs. TrEMBL
Match: A0A0A0K6Y8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G046640 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 9.2e-33
Identity = 72/82 (87.80%), Postives = 75/82 (91.46%), Query Frame = 1


Query: 1  MSSSTRTLVVAASVGVVEALKDQGICRWNNVLRSAHHYTRNHVGFISQAKKFSSAVPSAN 60
          MSSSTR LVVAA+VGVVEALKDQGICRWN++LRSAHHY RNHV  ISQAKK SSAVPSAN
Sbjct: 1  MSSSTRALVVAATVGVVEALKDQGICRWNHLLRSAHHYARNHVRSISQAKKLSSAVPSAN 60

Query: 61 HVQQSEESLRTVMYLSCWGPNN 83
            QQSEESLRTVMYLSCWGPNN
Sbjct: 61 RFQQSEESLRTVMYLSCWGPNN 82

[Close]

BLAST of Lsi11G015120 vs. TrEMBL
Match: A0A0B2P4W2_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_037966 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.1e-22
Identity = 59/89 (66.29%), Postives = 66/89 (74.16%), Query Frame = 1


Query: 1  MSSSTRTLVVAASVGVVEALKDQGICRWNNVLRSAHHYTRNHVGFISQAKKFSSAVPSA- 60
          MSS++RT  VAASVGVVEALKDQG+CRWNN LRSA H  +NHV  +SQ KK SS+  SA 
Sbjct: 1  MSSASRTWAVAASVGVVEALKDQGLCRWNNALRSAQHQVKNHVRSLSQEKKVSSSSSSAV 60

Query: 61 -------NHVQQSEESLRTVMYLSCWGPN 82
                    +QSEESLRTVMYLSCWGPN
Sbjct: 61 VSSRLKEEGAKQSEESLRTVMYLSCWGPN 89

[Close]

BLAST of Lsi11G015120 vs. TrEMBL
Match: I3SKC5_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.1e-22
Identity = 57/92 (61.96%), Postives = 69/92 (75.00%), Query Frame = 1


Query: 1  MSSSTRTLVVAASVGVVEALKDQGICRWNNVLRSAHHYTRNHVGFISQAKKFSSAVPSA- 60
          MSS++R   VAASVGVVEALKDQG+CRWN+V+RSA H+ +NHV  +SQAKK SS+  S+ 
Sbjct: 2  MSSASRAWTVAASVGVVEALKDQGLCRWNSVIRSAQHHVKNHVRSLSQAKKLSSSSSSSA 61

Query: 61 ---------NHVQQSEESLRTVMYLSCWGPNN 83
                      ++SEESLRTVMYLSCWGPNN
Sbjct: 62 MVSNRSLKEEEAKKSEESLRTVMYLSCWGPNN 93

[Close]

BLAST of Lsi11G015120 vs. TrEMBL
Match: A0A0B2S8V4_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_017207 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 5.6e-22
Identity = 57/86 (66.28%), Postives = 64/86 (74.42%), Query Frame = 1


Query: 1  MSSSTRTLVVAASVGVVEALKDQGICRWNNVLRSAHHYTRNHVGFISQAKKFSSAVPSAN 60
          MSS  R   VA SVGVVEALKDQGICRWN+ LRSA H+ +NHVG  SQA K SS+  S+ 
Sbjct: 1  MSSGIRAWSVATSVGVVEALKDQGICRWNHALRSAQHHLKNHVGSFSQANKLSSSAMSST 60

Query: 61 HVQ-----QSEESLRTVMYLSCWGPN 82
           ++     QSEESLRTVMYLSCWGPN
Sbjct: 61 TLKHEKTNQSEESLRTVMYLSCWGPN 86

[Close]

BLAST of Lsi11G015120 vs. TAIR10
Match: AT4G10265.1 (AT4G10265.1 Wound-responsive family protein)

HSP 1 Score: 104.8 bits (260), Expect = 2.7e-23
Identity = 52/83 (62.65%), Postives = 68/83 (81.93%), Query Frame = 1


Query: 1  MSSSTRTLVVAASVGVVEALKDQ-GICRWNNVLRSAHHYTRNHVGFISQAKKF-SSAVPS 60
          MSS+++T +VAAS+G VEALKDQ G+CRWN V+RSA+ Y RN++  +SQAKK  SS++  
Sbjct: 1  MSSASKTWMVAASIGAVEALKDQLGVCRWNYVIRSANQYLRNNLRSVSQAKKLSSSSIDY 60

Query: 61 ANHVQQSEESLRTVMYLSCWGPN 82
           N  +Q+EESLRTVMYLSCWGP+
Sbjct: 61 TNKTKQAEESLRTVMYLSCWGPS 83

[Close]

BLAST of Lsi11G015120 vs. TAIR10
Match: AT4G10270.1 (AT4G10270.1 Wound-responsive family protein)

HSP 1 Score: 95.1 bits (235), Expect = 2.1e-20
Identity = 49/90 (54.44%), Postives = 64/90 (71.11%), Query Frame = 1


Query: 1  MSSSTRTLVVAASVGVVEALKDQ-GICRWNNVLRSAHHYTRNHVGFISQAKKFSSAVPSA 60
          MSS+++   VA S+G VEALKDQ G+CRWN +LRS + + RN+V  +SQ K+FSS+  SA
Sbjct: 1  MSSTSKAWTVAVSIGAVEALKDQLGLCRWNYILRSVNQHLRNNVRSVSQGKRFSSSSVSA 60

Query: 61 --------NHVQQSEESLRTVMYLSCWGPN 82
                     +++EESLRTVMYLSCWGPN
Sbjct: 61 AVTSSGESEKAKKAEESLRTVMYLSCWGPN 90

[Close]

BLAST of Lsi11G015120 vs. NCBI nr
Match: gi|659110685|ref|XP_008455358.1| (PREDICTED: uncharacterized protein LOC103495544 [Cucumis melo])

HSP 1 Score: 150.6 bits (379), Expect = 1.2e-33
Identity = 72/82 (87.80%), Postives = 77/82 (93.90%), Query Frame = 1


Query: 1  MSSSTRTLVVAASVGVVEALKDQGICRWNNVLRSAHHYTRNHVGFISQAKKFSSAVPSAN 60
          MSSSTR L+VAA+VGVVEALKDQGICRWN++LRSAHHY RNHVG ISQAKKFSSAV SAN
Sbjct: 1  MSSSTRALIVAATVGVVEALKDQGICRWNHILRSAHHYARNHVGSISQAKKFSSAVSSAN 60

Query: 61 HVQQSEESLRTVMYLSCWGPNN 83
           +QQSEESLRTVMYLSCWGPNN
Sbjct: 61 RLQQSEESLRTVMYLSCWGPNN 82

[Close]

BLAST of Lsi11G015120 vs. NCBI nr
Match: gi|449438058|ref|XP_004136807.1| (PREDICTED: uncharacterized protein LOC101222779 [Cucumis sativus])

HSP 1 Score: 148.3 bits (373), Expect = 5.9e-33
Identity = 71/82 (86.59%), Postives = 76/82 (92.68%), Query Frame = 1


Query: 1  MSSSTRTLVVAASVGVVEALKDQGICRWNNVLRSAHHYTRNHVGFISQAKKFSSAVPSAN 60
          MSSSTR L VAA+VGVVEALKDQGICRWN++LRSAHHY RNHVG +SQAKKFSSAV SAN
Sbjct: 1  MSSSTRALFVAATVGVVEALKDQGICRWNHILRSAHHYARNHVGSLSQAKKFSSAVSSAN 60

Query: 61 HVQQSEESLRTVMYLSCWGPNN 83
           +QQSEESLRTVMYLSCWGPNN
Sbjct: 61 RLQQSEESLRTVMYLSCWGPNN 82

[Close]

BLAST of Lsi11G015120 vs. NCBI nr
Match: gi|449438060|ref|XP_004136808.1| (PREDICTED: uncharacterized protein LOC101223015 [Cucumis sativus])

HSP 1 Score: 147.1 bits (370), Expect = 1.3e-32
Identity = 72/82 (87.80%), Postives = 75/82 (91.46%), Query Frame = 1


Query: 1  MSSSTRTLVVAASVGVVEALKDQGICRWNNVLRSAHHYTRNHVGFISQAKKFSSAVPSAN 60
          MSSSTR LVVAA+VGVVEALKDQGICRWN++LRSAHHY RNHV  ISQAKK SSAVPSAN
Sbjct: 1  MSSSTRALVVAATVGVVEALKDQGICRWNHLLRSAHHYARNHVRSISQAKKLSSAVPSAN 60

Query: 61 HVQQSEESLRTVMYLSCWGPNN 83
            QQSEESLRTVMYLSCWGPNN
Sbjct: 61 RFQQSEESLRTVMYLSCWGPNN 82

[Close]

BLAST of Lsi11G015120 vs. NCBI nr
Match: gi|734321861|gb|KHN04286.1| (hypothetical protein glysoja_037966 [Glycine soja])

HSP 1 Score: 113.6 bits (283), Expect = 1.6e-22
Identity = 59/89 (66.29%), Postives = 66/89 (74.16%), Query Frame = 1


Query: 1  MSSSTRTLVVAASVGVVEALKDQGICRWNNVLRSAHHYTRNHVGFISQAKKFSSAVPSA- 60
          MSS++RT  VAASVGVVEALKDQG+CRWNN LRSA H  +NHV  +SQ KK SS+  SA 
Sbjct: 1  MSSASRTWAVAASVGVVEALKDQGLCRWNNALRSAQHQVKNHVRSLSQEKKVSSSSSSAV 60

Query: 61 -------NHVQQSEESLRTVMYLSCWGPN 82
                    +QSEESLRTVMYLSCWGPN
Sbjct: 61 VSSRLKEEGAKQSEESLRTVMYLSCWGPN 89

[Close]

BLAST of Lsi11G015120 vs. NCBI nr
Match: gi|388505302|gb|AFK40717.1| (unknown [Lotus japonicus])

HSP 1 Score: 113.6 bits (283), Expect = 1.6e-22
Identity = 57/92 (61.96%), Postives = 69/92 (75.00%), Query Frame = 1


Query: 1  MSSSTRTLVVAASVGVVEALKDQGICRWNNVLRSAHHYTRNHVGFISQAKKFSSAVPSA- 60
          MSS++R   VAASVGVVEALKDQG+CRWN+V+RSA H+ +NHV  +SQAKK SS+  S+ 
Sbjct: 2  MSSASRAWTVAASVGVVEALKDQGLCRWNSVIRSAQHHVKNHVRSLSQAKKLSSSSSSSA 61

Query: 61 ---------NHVQQSEESLRTVMYLSCWGPNN 83
                      ++SEESLRTVMYLSCWGPNN
Sbjct: 62 MVSNRSLKEEEAKKSEESLRTVMYLSCWGPNN 93

The following BLAST results are available for this feature:

BLAST of Lsi11G015120 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi11G015120 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K5N2_CUCSA	4.1e-33	86.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G046650 PE=4 SV=1	[more]
A0A0A0K6Y8_CUCSA	9.2e-33	87.80	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G046640 PE=4 SV=1	[more]
A0A0B2P4W2_GLYSO	1.1e-22	66.29	Uncharacterized protein OS=Glycine soja GN=glysoja_037966 PE=4 SV=1	[more]
I3SKC5_LOTJA	1.1e-22	61.96	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]
A0A0B2S8V4_GLYSO	5.6e-22	66.28	Uncharacterized protein OS=Glycine soja GN=glysoja_017207 PE=4 SV=1	[more]

BLAST of Lsi11G015120 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G10265.1	2.7e-23	62.65	Wound-responsive family protein	[more]
AT4G10270.1	2.1e-20	54.44	Wound-responsive family protein	[more]

BLAST of Lsi11G015120 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659110685\|ref\|XP_008455358.1\|	1.2e-33	87.80	PREDICTED: uncharacterized protein LOC103495544 [Cucumis melo]	[more]
gi\|449438058\|ref\|XP_004136807.1\|	5.9e-33	86.59	PREDICTED: uncharacterized protein LOC101222779 [Cucumis sativus]	[more]
gi\|449438060\|ref\|XP_004136808.1\|	1.3e-32	87.80	PREDICTED: uncharacterized protein LOC101223015 [Cucumis sativus]	[more]
gi\|734321861\|gb\|KHN04286.1\|	1.6e-22	66.29	hypothetical protein glysoja_037966 [Glycine soja]	[more]
gi\|388505302\|gb\|AFK40717.1\|	1.6e-22	61.96	unknown [Lotus japonicus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR022251	DUF3774_wound-induced

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009611	response to wounding
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G015120.1	Lsi11G015120.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022251	Protein of unknown function wound-induced	PFAM	PF12609	DUF3774	coord: 10..80 score: 1.1
None	No IPR available	PANTHER	PTHR33090	FAMILY NOT NAMED	coord: 1..81 score: 8.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi11G015120	Csa7G046640	Cucumber (Chinese Long) v2	culsiB494
Lsi11G015120	CSPI07G04250	Wild cucumber (PI 183967)	cpilsiB505
Lsi11G015120	Cucsa.147990	Cucumber (Gy14) v1	cgylsiB237
Lsi11G015120	CmaCh11G018550	Cucurbita maxima (Rimu)	cmalsiB091
Lsi11G015120	CmaCh19G009600	Cucurbita maxima (Rimu)	cmalsiB472
Lsi11G015120	CmoCh19G009920	Cucurbita moschata (Rifu)	cmolsiB457
Lsi11G015120	CmoCh11G019320	Cucurbita moschata (Rifu)	cmolsiB080
Lsi11G015120	Cla007722	Watermelon (97103) v1	lsiwmB100
Lsi11G015120	MELO3C018767	Melon (DHL92) v3.5.1	lsimeB095
Lsi11G015120	ClCG02G001320	Watermelon (Charleston Gray)	lsiwcgB097
Lsi11G015120	MELO3C018767.2	Melon (DHL92) v3.6.1	lsimedB101
Lsi11G015120	Cla97C02G027760	Watermelon (97103) v2	lsiwmbB086
Lsi11G015120	Bhi05G001570	Wax gourd	lsiwgoB116
Lsi11G015120	Cp4.1LG04g03370	Cucurbita pepo (Zucchini)	cpelsiB526
Lsi11G015120	Cp4.1LG15g07870	Cucurbita pepo (Zucchini)	cpelsiB199
Lsi11G015120	CsGy7G003880	Cucumber (Gy14) v2	cgyblsiB462
Lsi11G015120	Carg19099	Silver-seed gourd	carlsiB659
Lsi11G015120	Carg19210	Silver-seed gourd	carlsiB795
Lsi11G015120	CsaV3_7G004090	Cucumber (Chinese Long) v3	cuclsiB529

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi11G015120	Cucumber (Chinese Long) v3	cuclsiB009
Lsi11G015120	Cucumber (Chinese Long) v3	cuclsiB453
Lsi11G015120	Watermelon (97103) v2	lsiwmbB073
Lsi11G015120	Watermelon (97103) v2	lsiwmbB092
Lsi11G015120	Wax gourd	lsiwgoB129
Lsi11G015120	Wax gourd	lsiwgoB130
Lsi11G015120	Bottle gourd (USVL1VR-Ls)	lsilsiB024
Lsi11G015120	Bottle gourd (USVL1VR-Ls)	lsilsiB048
Lsi11G015120	Bottle gourd (USVL1VR-Ls)	lsilsiB049
Lsi11G015120	Cucumber (Gy14) v1	cgylsiB021
Lsi11G015120	Cucurbita maxima (Rimu)	cmalsiB198
Lsi11G015120	Cucurbita maxima (Rimu)	cmalsiB561
Lsi11G015120	Cucurbita maxima (Rimu)	cmalsiB785
Lsi11G015120	Cucurbita moschata (Rifu)	cmolsiB188
Lsi11G015120	Cucurbita moschata (Rifu)	cmolsiB544
Lsi11G015120	Cucurbita moschata (Rifu)	cmolsiB581
Lsi11G015120	Cucurbita pepo (Zucchini)	cpelsiB606
Lsi11G015120	Wild cucumber (PI 183967)	cpilsiB011
Lsi11G015120	Wild cucumber (PI 183967)	cpilsiB430
Lsi11G015120	Cucumber (Chinese Long) v2	culsiB012
Lsi11G015120	Melon (DHL92) v3.5.1	lsimeB090
Lsi11G015120	Melon (DHL92) v3.5.1	lsimeB119
Lsi11G015120	Watermelon (Charleston Gray)	lsiwcgB104
Lsi11G015120	Watermelon (Charleston Gray)	lsiwcgB089
Lsi11G015120	Watermelon (97103) v1	lsiwmB093
Lsi11G015120	Watermelon (97103) v1	lsiwmB099
Lsi11G015120	Melon (DHL92) v3.6.1	lsimedB096
Lsi11G015120	Melon (DHL92) v3.6.1	lsimedB126
Lsi11G015120	Silver-seed gourd	carlsiB028
Lsi11G015120	Silver-seed gourd	carlsiB584