Lsi11G011090 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi11G011090
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Transcription factor radialis-like protein
Location	chr11 : 19332848 .. 19334863 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCTATGTCTTCCCATGGATCTGGTACATGGACTGCAAAGCAAAACAAGGCCTTTGAGAAGGCATTGGCAGTTTATGATCAAGACACACCTGACCGATGGCTCAATGTTGCAAAAGCTGTTGGTGGAAAAACAGCTGAGGAAGTCAAAAGGCATTATGCACTTCTTGTTGAGGATGTTAAGTTTATTGAGTCTGGCCAAGTTCCTTACCCTTATCGAACCTCCGGAGGCGGTAGCCAAGGTAATATAAGCTTTCTGATTTATTGGTGATTTAAAGTATGGTAATAGTGTATGAGGATTCTGTGTGTTTGAGTTTCTAAAATGTCATTTTCTCTCTACTCATTGGATCTTGTACTAAAATATTGATATATAACTAAATTTGTTGTAACTCATAAACGTAAGATTTTAAGGTACGTTGATTAGTGGTTTAAAGAACAATAGTGGTGATTAGTGGTTTAACGAACGATATGATCATCGATGACAAAAGGACGTAGTATATAATAAAAAAAATGGTGGAAACATATGGATGAACATAGTGTTTCATCTCAAAACCAATTGACAATCAGAAGAGTAGCTCATATATCTAGTTAAAATTGTGAGATCTCCTCATATTTCTAATGTAAGAATCCTCAACATGTCTCTCAAAATAGTGTCTCTTTGAATTCGTCATTCTTGTGTCAGATCATAATATATATATATATATATATATATATATATATATATATATTTATCGAATACCCATTTGAGTTTTAGGCTCTAATACTGTACATATAGATAAACATGCATGTGTGTTCCATCTCAAACCAATTAACTATGAGAAGGACAATTTATATATCTTATATTCTTTTTTTTTTTAATTGTATTATATACAAAAAAATTTCTAAATAATGCCTCTTTAGGTTTACCATTATTAGTCATTTTAGACCCAATACTCATTTGGAACCTCATGCTTATATGATAATATGTAGTTACGAAAAAACTTTCCTACATATCCCTCAATGAGAGTTATTATTAACTTTTTGTTGGTGGTGTATTCTTAATGATTCGGAAATGTTAGTGGAGATTACATATCTTAAACATGCATTGTTTTATAAATAATATGTTTGTCTACCCACTTTAGCTCATAAAAACAAGTCTTAATAATATTGATATTTTTATGGGTACGATGAGACCAATTACACTAATACATCAGATCTTATCAGAACTCTACAGTTAATCGTGTTTGAGCAAGAGTAGTATTAAGTTGGGTGACTACTTGAAAAATCCTCGTGTTGCACTGCTTAAATATATATATTGATAATTTTATAATAGAAGTTTCTATAACACATCATCATGTAATATTATTTGATAGTCACAATCTCTCTCTTATTTAATTGTTTTTATTTTGACTAGAGAACTCACATGGTTAAAATACACTAAACTACATCATTATACATACAGTGATACAACATAGTATCAAAGTAGAAGGTAATCTTATGTTTGATAAAATAATTGATTAGGAATCTATATTTTTGTCTCTAGTTATGTTTTTGACTGATCTAGTTGAGTTCAAATGGAGCACTCCAACTATTTTCCATGTAGAAAAAAAAAACCCTAGCCTAAGCCATTGGGTTTTGAATGATCTCTAGCTAGCTTGCAAAAATTTTATGTCTTTATACAATTTGTATGTATATGAGCAGAGGAATGTCAATATCAATGAACAGTAGCCCCCCCATTTGGCATGCATTCTTCTGTGAATTAATGGCTCTACATGTTTCAATAAAAAACAATATAACTCTTGATCTTGTAAGCTTTTTGAAAGGCCCCCTTTTCTTCTTGTTCTTTGAAACTAAAGCTGCACCAATCTCTAGCATTGGCTCTTCAGACTCCAACAAAAACAACATTTATAATAATAATATATCATTTATATAAATTTAACATCTTATTATTATATATGTTGGATTATTATTATTATTATTATTATTATTATTTTTTTTTATTCTTAGGATGAGGAACTTGAAGTTCTACCATTGA

mRNA sequence

ATGGCTTCTATGTCTTCCCATGGATCTGGTACATGGACTGCAAAGCAAAACAAGGCCTTTGAGAAGGCATTGGCAGTTTATGATCAAGACACACCTGACCGATGGCTCAATGTTGCAAAAGCTGTTGGTGGAAAAACAGCTGAGGAAGTCAAAAGGCATTATGCACTTCTTGTTGAGGATGTTAAGTTTATTGAGATGAGGAACTTGAAGTTCTACCATTGA

Coding sequence (CDS)

ATGGCTTCTATGTCTTCCCATGGATCTGGTACATGGACTGCAAAGCAAAACAAGGCCTTTGAGAAGGCATTGGCAGTTTATGATCAAGACACACCTGACCGATGGCTCAATGTTGCAAAAGCTGTTGGTGGAAAAACAGCTGAGGAAGTCAAAAGGCATTATGCACTTCTTGTTGAGGATGTTAAGTTTATTGAGATGAGGAACTTGAAGTTCTACCATTGA

Protein sequence

MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIEMRNLKFYH

Homology

[Close]

BLAST of Lsi11G011090 vs. Swiss-Prot
Match: RADL1_ARATH (Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 3.2e-22
Identity = 50/70 (71.43%), Postives = 58/70 (82.86%), Query Frame = 1


Query: 2  ASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDV 61
          +SMSS  SG+WTAKQNKAFE+ALA YDQDTP+RW NVAK VGGKT EEVKRHY LLV+D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62 KFIEMRNLKF 72
            IE  ++ F
Sbjct: 64 NSIENGHVPF 73

[Close]

BLAST of Lsi11G011090 vs. Swiss-Prot
Match: RADL2_ARATH (Protein RADIALIS-like 2 OS=Arabidopsis thaliana GN=RL2 PE=2 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 5.5e-22
Identity = 50/69 (72.46%), Postives = 58/69 (84.06%), Query Frame = 1


Query: 3  SMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVK 62
          SMSS+GSG+WT KQNKAFE+ALAVYDQDTPDRW NVA+AVGGKT EE KR Y LLV D++
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63 FIEMRNLKF 72
           IE  ++ F
Sbjct: 65 SIENGHVPF 73

[Close]

BLAST of Lsi11G011090 vs. Swiss-Prot
Match: RADL5_ARATH (Protein RADIALIS-like 5 OS=Arabidopsis thaliana GN=RL5 PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 6.7e-20
Identity = 47/65 (72.31%), Postives = 54/65 (83.08%), Query Frame = 1


Query: 1  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MAS S   S +WT+KQNK FE+ALAVYD+DTPDRW NVAKAVG K+AEEVKRHY +LVED
Sbjct: 1  MASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVED 60

Query: 61 VKFIE 66
          +  IE
Sbjct: 61 LMNIE 65

[Close]

BLAST of Lsi11G011090 vs. Swiss-Prot
Match: RAD_ANTMA (Transcription factor RADIALIS OS=Antirrhinum majus GN=RAD PE=1 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.5e-19
Identity = 45/68 (66.18%), Postives = 57/68 (83.82%), Query Frame = 1


Query: 5  SSHGSGT-WTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKF 64
          S+ GSG  W+AK+NKAFE+ALAVYD+DTPDRW NVA+AV G+T EEVK+HY +LVED+K+
Sbjct: 3  STRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKY 62

Query: 65 IEMRNLKF 72
          IE   + F
Sbjct: 63 IESGKVPF 70

[Close]

BLAST of Lsi11G011090 vs. Swiss-Prot
Match: RADL3_ARATH (Protein RADIALIS-like 3 OS=Arabidopsis thaliana GN=RL3 PE=2 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 3.3e-19
Identity = 45/65 (69.23%), Postives = 52/65 (80.00%), Query Frame = 1


Query: 1  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MAS S   S +WT K+NK FE+ALA YDQDTPDRW NVA+AVGGK+AEEV+RHY LL+ D
Sbjct: 1  MASNSMSSSASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELLIRD 60

Query: 61 VKFIE 66
          V  IE
Sbjct: 61 VNDIE 65

[Close]

BLAST of Lsi11G011090 vs. TrEMBL
Match: A0A0A0K348_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G170600 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.0e-27
Identity = 64/71 (90.14%), Postives = 65/71 (91.55%), Query Frame = 1


Query: 1  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGSGTWT  QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED
Sbjct: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIEMRNLKF 72
          VKFIE   + F
Sbjct: 61 VKFIESGQVPF 71

[Close]

BLAST of Lsi11G011090 vs. TrEMBL
Match: A0A0A0K344_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G169070 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 7.0e-24
Identity = 55/71 (77.46%), Postives = 63/71 (88.73%), Query Frame = 1


Query: 1  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MAS+S+HGSG WTAKQNKAFE+ALA+YD+DTPDRWLNVAKA+GGKT EEVKRHY LL+ED
Sbjct: 1  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKFIEMRNLKF 72
          VK IE   + F
Sbjct: 61 VKHIESGKVPF 71

[Close]

BLAST of Lsi11G011090 vs. TrEMBL
Match: A0A0D2W2J5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G036700 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 7.7e-23
Identity = 55/70 (78.57%), Postives = 61/70 (87.14%), Query Frame = 1


Query: 2  ASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDV 61
          +SMSS GSG+WTAKQNK FE+ALAVYD+DTPDRW NVAKAVGGKTAEEVKRHY LLV DV
Sbjct: 4  SSMSSRGSGSWTAKQNKDFERALAVYDKDTPDRWYNVAKAVGGKTAEEVKRHYELLVADV 63

Query: 62 KFIEMRNLKF 72
          K+IE   + F
Sbjct: 64 KYIESGQVPF 73

[Close]

BLAST of Lsi11G011090 vs. TrEMBL
Match: B9RBF6_RICCO (DNA binding protein, putative OS=Ricinus communis GN=RCOM_1675480 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.0e-22
Identity = 54/70 (77.14%), Postives = 62/70 (88.57%), Query Frame = 1


Query: 2  ASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDV 61
          +SMSS GSG+WTA+QNKAFE+ALAVYD+DTPDRW NVA+AVGGKT EEVKRHY LLVEDV
Sbjct: 4  SSMSSRGSGSWTAQQNKAFERALAVYDKDTPDRWANVARAVGGKTPEEVKRHYDLLVEDV 63

Query: 62 KFIEMRNLKF 72
          K+IE   + F
Sbjct: 64 KYIESGQVPF 73

[Close]

BLAST of Lsi11G011090 vs. TrEMBL
Match: A0A061E040_THECC (Homeodomain-like superfamily protein OS=Theobroma cacao GN=TCM_006883 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.0e-22
Identity = 55/70 (78.57%), Postives = 61/70 (87.14%), Query Frame = 1


Query: 2  ASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDV 61
          +SMSS GSG+WTAKQNK FE+ALAVYD+DTPDRW NVAKAVGGKTAEEVKRHY LLV+DV
Sbjct: 4  SSMSSRGSGSWTAKQNKDFERALAVYDKDTPDRWYNVAKAVGGKTAEEVKRHYELLVQDV 63

Query: 62 KFIEMRNLKF 72
          K IE   + F
Sbjct: 64 KHIESGQVPF 73

[Close]

BLAST of Lsi11G011090 vs. TAIR10
Match: AT4G39250.1 (AT4G39250.1 RAD-like 1)

HSP 1 Score: 105.1 bits (261), Expect = 1.8e-23
Identity = 50/70 (71.43%), Postives = 58/70 (82.86%), Query Frame = 1


Query: 2  ASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDV 61
          +SMSS  SG+WTAKQNKAFE+ALA YDQDTP+RW NVAK VGGKT EEVKRHY LLV+D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62 KFIEMRNLKF 72
            IE  ++ F
Sbjct: 64 NSIENGHVPF 73

[Close]

BLAST of Lsi11G011090 vs. TAIR10
Match: AT2G21650.1 (AT2G21650.1 Homeodomain-like superfamily protein)

HSP 1 Score: 104.4 bits (259), Expect = 3.1e-23
Identity = 50/69 (72.46%), Postives = 58/69 (84.06%), Query Frame = 1


Query: 3  SMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVK 62
          SMSS+GSG+WT KQNKAFE+ALAVYDQDTPDRW NVA+AVGGKT EE KR Y LLV D++
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63 FIEMRNLKF 72
           IE  ++ F
Sbjct: 65 SIENGHVPF 73

[Close]

BLAST of Lsi11G011090 vs. TAIR10
Match: AT1G19510.1 (AT1G19510.1 RAD-like 5)

HSP 1 Score: 97.4 bits (241), Expect = 3.8e-21
Identity = 47/65 (72.31%), Postives = 54/65 (83.08%), Query Frame = 1


Query: 1  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MAS S   S +WT+KQNK FE+ALAVYD+DTPDRW NVAKAVG K+AEEVKRHY +LVED
Sbjct: 1  MASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVED 60

Query: 61 VKFIE 66
          +  IE
Sbjct: 61 LMNIE 65

[Close]

BLAST of Lsi11G011090 vs. TAIR10
Match: AT1G75250.1 (AT1G75250.1 RAD-like 6)

HSP 1 Score: 92.0 bits (227), Expect = 1.6e-19
Identity = 46/65 (70.77%), Postives = 50/65 (76.92%), Query Frame = 1


Query: 1  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MAS S      WT  QNK FE+ALAVYD+DTPDRW NVAKAVGGKT EEVKRHY +LVED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKFIE 66
          +  IE
Sbjct: 61 LINIE 65

[Close]

BLAST of Lsi11G011090 vs. TAIR10
Match: AT4G36570.1 (AT4G36570.1 RAD-like 3)

HSP 1 Score: 85.1 bits (209), Expect = 1.9e-17
Identity = 39/54 (72.22%), Postives = 45/54 (83.33%), Query Frame = 1


Query: 1  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHY 55
          MAS S   S +WT K+NK FE+ALA YDQDTPDRW NVA+AVGGK+AEEV+RHY
Sbjct: 1  MASNSMSSSASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHY 54

[Close]

BLAST of Lsi11G011090 vs. NCBI nr
Match: gi|659092346|ref|XP_008447024.1| (PREDICTED: protein RADIALIS-like 1 [Cucumis melo])

HSP 1 Score: 132.5 bits (332), Expect = 3.0e-28
Identity = 65/71 (91.55%), Postives = 66/71 (92.96%), Query Frame = 1


Query: 1  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGSGTWT KQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED
Sbjct: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIEMRNLKF 72
          VKFIE   + F
Sbjct: 61 VKFIESGQVPF 71

[Close]

BLAST of Lsi11G011090 vs. NCBI nr
Match: gi|778725458|ref|XP_004151125.2| (PREDICTED: protein RADIALIS-like 1 [Cucumis sativus])

HSP 1 Score: 130.2 bits (326), Expect = 1.5e-27
Identity = 64/71 (90.14%), Postives = 65/71 (91.55%), Query Frame = 1


Query: 1  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGSGTWT  QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED
Sbjct: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIEMRNLKF 72
          VKFIE   + F
Sbjct: 61 VKFIESGQVPF 71

[Close]

BLAST of Lsi11G011090 vs. NCBI nr
Match: gi|659092351|ref|XP_008447025.1| (PREDICTED: protein RADIALIS-like 1 [Cucumis melo])

HSP 1 Score: 120.2 bits (300), Expect = 1.5e-24
Identity = 57/71 (80.28%), Postives = 63/71 (88.73%), Query Frame = 1


Query: 1  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMS+HGSG WTAKQNKAFEKALA+YD+DTPDRWLNVAKA+GGKT EEVKRHY LL+ED
Sbjct: 1  MASMSAHGSGVWTAKQNKAFEKALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKFIEMRNLKF 72
          VK IE   + F
Sbjct: 61 VKHIESGKVPF 71

[Close]

BLAST of Lsi11G011090 vs. NCBI nr
Match: gi|449466805|ref|XP_004151116.1| (PREDICTED: protein RADIALIS-like 1 [Cucumis sativus])

HSP 1 Score: 117.5 bits (293), Expect = 1.0e-23
Identity = 55/71 (77.46%), Postives = 63/71 (88.73%), Query Frame = 1


Query: 1  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MAS+S+HGSG WTAKQNKAFE+ALA+YD+DTPDRWLNVAKA+GGKT EEVKRHY LL+ED
Sbjct: 1  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKFIEMRNLKF 72
          VK IE   + F
Sbjct: 61 VKHIESGKVPF 71

[Close]

BLAST of Lsi11G011090 vs. NCBI nr
Match: gi|743793924|ref|XP_011048444.1| (PREDICTED: protein RADIALIS-like 1 [Populus euphratica])

HSP 1 Score: 114.8 bits (286), Expect = 6.5e-23
Identity = 55/70 (78.57%), Postives = 63/70 (90.00%), Query Frame = 1


Query: 2  ASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDV 61
          +SMSS GSG+WTA+QNKAFE+ALAVYD+DTPDRW NVA+AVGGKTAEEVKRHY LLVEDV
Sbjct: 4  SSMSSRGSGSWTAQQNKAFERALAVYDRDTPDRWYNVARAVGGKTAEEVKRHYELLVEDV 63

Query: 62 KFIEMRNLKF 72
          K IE  ++ F
Sbjct: 64 KHIESGHVPF 73

The following BLAST results are available for this feature:

BLAST of Lsi11G011090 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RADL1_ARATH	3.2e-22	71.43	Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1	[more]
RADL2_ARATH	5.5e-22	72.46	Protein RADIALIS-like 2 OS=Arabidopsis thaliana GN=RL2 PE=2 SV=1	[more]
RADL5_ARATH	6.7e-20	72.31	Protein RADIALIS-like 5 OS=Arabidopsis thaliana GN=RL5 PE=3 SV=1	[more]
RAD_ANTMA	1.5e-19	66.18	Transcription factor RADIALIS OS=Antirrhinum majus GN=RAD PE=1 SV=1	[more]
RADL3_ARATH	3.3e-19	69.23	Protein RADIALIS-like 3 OS=Arabidopsis thaliana GN=RL3 PE=2 SV=1	[more]

BLAST of Lsi11G011090 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K348_CUCSA	1.0e-27	90.14	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G170600 PE=4 SV=1	[more]
A0A0A0K344_CUCSA	7.0e-24	77.46	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G169070 PE=4 SV=1	[more]
A0A0D2W2J5_GOSRA	7.7e-23	78.57	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G036700 PE=4 SV=1	[more]
B9RBF6_RICCO	1.0e-22	77.14	DNA binding protein, putative OS=Ricinus communis GN=RCOM_1675480 PE=4 SV=1	[more]
A0A061E040_THECC	1.0e-22	78.57	Homeodomain-like superfamily protein OS=Theobroma cacao GN=TCM_006883 PE=4 SV=1	[more]

BLAST of Lsi11G011090 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G39250.1	1.8e-23	71.43	RAD-like 1	[more]
AT2G21650.1	3.1e-23	72.46	Homeodomain-like superfamily protein	[more]
AT1G19510.1	3.8e-21	72.31	RAD-like 5	[more]
AT1G75250.1	1.6e-19	70.77	RAD-like 6	[more]
AT4G36570.1	1.9e-17	72.22	RAD-like 3	[more]

BLAST of Lsi11G011090 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659092346\|ref\|XP_008447024.1\|	3.0e-28	91.55	PREDICTED: protein RADIALIS-like 1 [Cucumis melo]	[more]
gi\|778725458\|ref\|XP_004151125.2\|	1.5e-27	90.14	PREDICTED: protein RADIALIS-like 1 [Cucumis sativus]	[more]
gi\|659092351\|ref\|XP_008447025.1\|	1.5e-24	80.28	PREDICTED: protein RADIALIS-like 1 [Cucumis melo]	[more]
gi\|449466805\|ref\|XP_004151116.1\|	1.0e-23	77.46	PREDICTED: protein RADIALIS-like 1 [Cucumis sativus]	[more]
gi\|743793924\|ref\|XP_011048444.1\|	6.5e-23	78.57	PREDICTED: protein RADIALIS-like 1 [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR017884	SANT_dom
IPR009057	Homeobox-like_sf
IPR001005	SANT/Myb

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0000785	chromatin
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G011090.1	Lsi11G011090.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 10..54 score: 2.
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 8..60 score: 3.
IPR009057	Homeodomain-like	GENE3D	G3DSA:1.10.10.60		coord: 10..62 score: 1.
IPR009057	Homeodomain-like	unknown	SSF46689	Homeodomain-like	coord: 10..64 score: 1.4
IPR017884	SANT domain	PROFILE	PS51293	SANT	coord: 7..62 score: 9
None	No IPR available	PANTHER	PTHR24078	DNAJ HOMOLOG SUBFAMILY C MEMBER	coord: 12..72 score: 2.5
None	No IPR available	PANTHER	PTHR24078:SF177	PROTEIN DNJ-23-RELATED	coord: 12..72 score: 2.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi11G011090	Cp4.1LG15g05470	Cucurbita pepo (Zucchini)	cpelsiB199

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi11G011090	Wild cucumber (PI 183967)	cpilsiB097
Lsi11G011090	Wild cucumber (PI 183967)	cpilsiB506
Lsi11G011090	Cucumber (Chinese Long) v2	culsiB494
Lsi11G011090	Melon (DHL92) v3.5.1	lsimeB096
Lsi11G011090	Watermelon (Charleston Gray)	lsiwcgB085
Lsi11G011090	Watermelon (Charleston Gray)	lsiwcgB097
Lsi11G011090	Watermelon (97103) v1	lsiwmB106
Lsi11G011090	Watermelon (97103) v1	lsiwmB111
Lsi11G011090	Cucumber (Gy14) v2	cgyblsiB090
Lsi11G011090	Cucumber (Gy14) v2	cgyblsiB462
Lsi11G011090	Melon (DHL92) v3.6.1	lsimedB090
Lsi11G011090	Melon (DHL92) v3.6.1	lsimedB102
Lsi11G011090	Silver-seed gourd	carlsiB157
Lsi11G011090	Silver-seed gourd	carlsiB290
Lsi11G011090	Silver-seed gourd	carlsiB809
Lsi11G011090	Cucumber (Chinese Long) v3	cuclsiB109
Lsi11G011090	Cucumber (Chinese Long) v3	cuclsiB529
Lsi11G011090	Watermelon (97103) v2	lsiwmbB080
Lsi11G011090	Watermelon (97103) v2	lsiwmbB086
Lsi11G011090	Wax gourd	lsiwgoB115
Lsi11G011090	Wax gourd	lsiwgoB128
Lsi11G011090	Bottle gourd (USVL1VR-Ls)	lsilsiB021
Lsi11G011090	Cucumber (Gy14) v1	cgylsiB146
Lsi11G011090	Cucumber (Gy14) v1	cgylsiB610
Lsi11G011090	Cucurbita maxima (Rimu)	cmalsiB103
Lsi11G011090	Cucurbita maxima (Rimu)	cmalsiB472
Lsi11G011090	Cucurbita maxima (Rimu)	cmalsiB514
Lsi11G011090	Cucurbita maxima (Rimu)	cmalsiB562
Lsi11G011090	Cucurbita moschata (Rifu)	cmolsiB090
Lsi11G011090	Cucurbita moschata (Rifu)	cmolsiB457
Lsi11G011090	Cucurbita moschata (Rifu)	cmolsiB500
Lsi11G011090	Cucurbita moschata (Rifu)	cmolsiB545
Lsi11G011090	Cucurbita pepo (Zucchini)	cpelsiB231
Lsi11G011090	Cucurbita pepo (Zucchini)	cpelsiB532
Lsi11G011090	Cucurbita pepo (Zucchini)	cpelsiB605
Lsi11G011090	Melon (DHL92) v3.5.1	lsimeB086